Observed changes in soyabean growth and seed yield from Abutilon theophrasti competition as a function of carbon dioxide concentration

Soyabean (Glycine max) was grown at ambient and projected levels of atmospheric carbon dioxide (+250 μmol mol^?1 above ambient) over two field seasons with and without the presence of a weed, Abutilon theophrasti, to quantify the potential effect of rising atmospheric carbon dioxide concentration on weed–crop interactions and potential yield loss in soyabean. Under weed‐free conditions, elevated CO₂ resulted in stimulations in soyabean seed yield and associated components, including pod number. At an approximate density of 6 plants m^?2, A. theophrasti competition resulted in a significant reduction (?40%) in soyabean seed yield. Although differences in seed yield reduction by A. theophrasti were observed as a function of year, the relative decrease in seed yield with A. theophrasti biomass did not differ in response to CO₂. Although careful weed management will be necessary if CO₂‐induced increases in seed yield for soyabean are to be achieved, these data suggest that soyabean seed yield may be more resilient in competition with A. theophrasti as a function of rising atmospheric levels of carbon dioxide.     

Weed species composition of conventional soyabean crops in Hungary is determined by environmental,cultural, weed management and site variables

The goal of this study was to identify factors determining weed species composition in soyabean crops in Hungary, where its expanding production faces difficult weed problems. The abundance of weed flora was measured in 262 fields across the country, along with 38 background variables. Using a minimal adequate model containing 24 terms with significant net effects, 21.6% of the total variation in weed species data could be explained. Plot location (edge vs core position, the single site variable in our analysis) was found to be the most important explanatory variable that was followed by a set of environmental (temperature, precipitation, altitude, soil texture, pH, Ca, K, Na and humus content), cultural (cultivar maturity, organic manure, fertiliser P and N, row spacing) and weed management (flumioxazin, pendimethalin, dimethenamid, propaquizafop, bentazone, quizalofop‐p‐ethyl, quizalofop‐p‐tefuril, linuron, thifensulfuron) factors. Variation partitioning revealed that environmental variables accounted for about four times more variance than cultural and about two and half times more than weed management variables. Chenopodium album, Ambrosia artemisiifolia, Hibiscus trionum, Echinochloa crus‐galli and Convolvulus arvensis were the most dominant and frequent weeds, but their abundance was influenced by different factors. The responses of weed species to the studied variables provide new information about their ecological behaviour, and our findings also can be used to develop better weed management strategies.     

Changes in functional diversity and intraspecific trait variability of weeds in response to crop sequences and climate

How weed communities assemble represents one the key issues of weed science. For a decade, functional approaches have been applied to investigate the processes that govern weed community assembly. In most previous studies, trait values have been generally averaged over multiple populations and habitats. Consequently, conspecifics display similar trait values while neglecting the considerable influence of intraspecific variability to detect changes in functional diversity in response to environmental drivers. However, this influence has been shown to be critical, especially, at local scales. Here, we studied changes in weed functional diversity at the field scale in four crop sequences. We focused on intra‐ and interspecific variability of four key functional traits involved in response to resource acquisition processes, the latter being modified by climate, management and competition. The relative influence of intra‐ and interspecific variability among the crop sequence types was highlighted using a diversity partitioning approach. It provides evidence for substantial amount of intraspecific variability in the weed community and underlines its essential role in response to fine‐scale environmental drivers. In addition, we investigated the response of the three most abundant species to competition with the crop, the growing season and the crop sequence type. We highlighted that these species showed a wide range of combinations of trait values, suggesting the co‐existence of several successful strategies. Based on these results, we emphasise that neglecting intraspecific variability can lead to substantial underestimations of the functional weed response to management and crop‐weed competition at the field scale.     

Meta‐analytic modelling of the incidence–yield and incidence–sclerotial production relationships in soybean white mould epidemics

White mould (Sclerotinia sclerotiorum) is a destructive disease of soybean worldwide. However, little is known of its impact on soybean production in Brazil. A meta‐analytic approach was used to assess the relationship between disease incidence and soybean yield (35 trials) and between incidence and sclerotia production (29 trials) in experiments conducted in 14 locations across four seasons. Region, site elevation and season included as moderators in random‐effects and random‐coefficients models did not significantly explain the variability in the slopes of the incidence–yield relationship. The Pearson's r, obtained from back‐transforming the Fisher's Z estimated by an overall random‐effects model, showed that incidence of white mould was moderately and negatively correlated with yield (r = ?0.76, P < 0.0001). A random‐coefficients model estimated a slope of ?17.2 kg ha^?1%^?1, for a mean attainable yield of 3455 kg ha^?1, indicating that a 10% increase in white mould incidence would result in a mean yield reduction of 172 kg ha^?1. White mould incidence and production of sclerotia were strongly and positively correlated (r = 0.85, P < 0.0001). For every 10% increase in white mould incidence, 1 kg ha^?1 of sclerotia was produced. The relationship between disease incidence and production of sclerotia was stronger in southern regions and at higher elevation. In the absence of management, economic losses associated with white mould epidemics, assuming 43% incidence in 22% of the soybean area, were estimated at approximately US $1.47 billion annually within Brazil.     

Site‐related set‐back by weeds on the establishment of 12 biomass willow clones

Ten commercial clones of willow and two breeding clones were studied for their ability to compete with weeds during the establishment year at three different sites in southern Sweden. Cuttings were planted according to commercial practice in April, and the two treatments, ‘Weeded’ and ‘Unweeded’, were laid out in a strip‐plot design. Weeds in the ‘Weeded’ treatment were removed mechanically and by hand hoeing. Willow plant shoot weight and plant mortality were measured after the first growing season to evaluate the initial effect of weeds. In addition, weed flora, weed aboveground biomass, soil properties, shoot damage and soil moisture were assessed during the growing season. Plant mortality was <1% in the ‘Weeded’ treatment at the three study sites, while in ‘Unweeded’ it was significantly higher, 2.7%, 24.6% and 37.4%. Weeds reduced willow plant shoot weight by 93.4%, 94.0% and 96.1% at the three sites. Only one site showed clonal differences in shoot growth reduction, as well as in plant mortality. These results show the importance of weed control in willow plantations, as growth of all clones tested were dramatically hampered by weeds during the first growing season, regardless of trial site conditions. Moreover, conditions at certain sites, such as soil properties in combination with weed cover, may cause high plant mortality during the establishment year in this perennial biomass crop.     

The impact of management on weeds and aquatic plant communities in Hungarian rice crops

This study assessed the cultural and weed management factors influencing the weed communities of Hungarian rice fields. Hungary is situated at the northern limit of rice production with a history of about 300 years of rice culture. We surveyed the weed flora and 25 background variables in 100 active rice fields. Using a minimal adequate model containing 11 terms, 48.5% of the total variation in weed species data could be explained. The net effects of nine variables on species composition were significant. Crop cover was found to be the most important explanatory variable, which was followed by the herbicides penoxsulam and azimsulfuron, tillage depth, phosphorous and potassium fertilisers, years after last rotation, water depth in May, sowing type, pendimethalin and water conductivity. Filamentous algae, as the most abundant group of weeds, were positively associated with deep tillage, deep water and surface sowing. Echinochloa crus‐galli, one of the most troublesome grass weeds, was associated with low rice cover, shallow water and later years after crop rotation, while weedy rice favoured high crop cover, deep water and soil sowing. These findings can be used to design improved weed management strategies. The occurrence of red list species and charophytes in diverse micro‐mosaic patterns deserves attention from a conservation perspective, as well. The maintenance of these unique charophyte communities can be facilitated by shallow tillage without soil inversion.     

Inoculation of Malus genotypes with a set of Erwinia amylovora strains indicates a gene‐for‐gene relationship between the effector gene eop1 and both Malus floribunda 821 and Malus ‘Evereste’

The Gram‐negative bacterium Erwinia amylovora, causal agent of fire blight disease in pome fruit trees, encodes a type three secretion system (T3SS) that translocates effector proteins into plant cells that collectively function to suppress host defences and enable pathogenesis. Until now, there has only been limited knowledge about the interaction of effector proteins and host resistance presented in several wild Malus species. This study tested disease responses in several Malus wild species with a set of effector deletion mutant strains and several highly virulent E. amylovora strains, which are assumed to influence the host resistance response of fire blight‐resistant Malus species. The findings confirm earlier studies that deletion of the T3SS abolished virulence of the pathogen. Furthermore, a new gene‐for‐gene relationship was established between the effector protein Eop1 and the fire blight resistant ornamental apple cultivar Evereste and the wild species Malus floribunda 821. The results presented here provide new insights into the host–pathogen interactions between Malus sp. and E. amylovora.     

外源5-ALA对干旱胁迫下玉米幼苗生长的缓解效应及抗氧化酶基因表达的影响

以抗旱玉米自交系郑58和干旱敏感自交系TS141为材料,研究了5-氨基乙酰丙酸（5-ALA）对15% PEG-6000模拟干旱胁迫下玉米幼苗生长的缓解效应及抗氧化酶基因表达的影响。结果表明：与对照相比,郑58及TS141在干旱胁迫下幼苗的苗长、鲜重、干重明显降低,郑58分别下降18.49%、29.06%和20.00%,TS141分别下降25.66%、23.97%和13.64%;叶片丙二醛（MDA）及过氧化氢（H₂O₂）含量明显增高,MDA含量分别提高了164.58%、263.53%,H₂O₂分别提高了134.95%、203.83%;超氧化物歧化酶(SOD)、过氧化物酶(POD)、过氧化氢酶(CAT)和抗坏血酸过氧化酶（APX）活性增加,郑58分别提高了65.61%、29.48%、68.49%、141.51%,TS141分别提高了63.01%、48.00%、85.68%、204.29%;叶绿素含量降低,分别降低33.46%、 42.26%;光合参数P_n、G_s、T_r下降,郑58的P_n、G_s、T_r分别下降48.78%、45.31%、52.39%,TS141的P_n、G_s、T_r分别下降57.66%、57.46%、65.14%;抗氧化酶基因SOD3、POD3、CAT1相对表达量提高,郑58分别提高54.58%、34.12%、69.70%,TS141分别提高54.95%、21.36%、59.34%。喷施25 mg·L^-1的5-ALA能明显缓解干旱胁迫对玉米幼苗造成的损伤,与PEG处理相比,玉米自交系郑58和 TS141的幼苗苗长、鲜重、干重明显增加,苗长分别增加了13.31%和11.21%,幼苗鲜重分别增加了22.29%和18.23%,幼苗干重分别增加了16.67%和10.53%;叶片中MDA含量分别降低了17.85%、25.39%,H₂O₂含量分别降低了23.26%、19.15%;SOD、POD、CAT和APX活性进一步增加,郑58分别增加16.49%、18.15%、36.98%和28.13%（P＜0.05）,TS141分别增加16.65%、16.54%、28.49%和26.76%（P＜0.05）;叶绿素含量和光合参数P_n、G_s、T_r增加,叶绿素含量分别增加18.29%、19.87%;光合参数P_n分别增加35.87%、42.12%,G_s分别增加36.63%、36.81%,T_r分别增加37.67%、67.88%;玉米幼苗叶片中抗氧化酶基因SOD3、POD3、CAT1相对表达量较干旱胁迫处理都有进一步提高,郑58分别提高20.99%、32.18%和23.51%,TS141分别提高25.97%、23.16%和40.94%。     

Alteration of gene expression profile in the roots of wild diploid Arachis duranensis inoculated with Ralstonia solanacearum

Bacterial wilt caused by Ralstonia solanacearum is a serious disease of peanut (Arachis hypogaea) in China. However, the molecular basis of peanut resistance to R. solanacearum is poorly understood. Arachis duranensis, a wild diploid species of the genus Arachis, has been proven to be resistant to bacterial wilt, and thus holds valuable potential for understanding the mechanism of resistance to bacterial wilt and genetic improvement of peanut disease resistance. Here, suppression subtractive hybridization (SSH) and macroarray hybridization were employed to detect differentially expressed genes (DEGs) in the roots of A. duranensis after R. solanacearum inoculation. A total of 317 unique genes were obtained, 265 of which had homologues and functional annotations. KEGG analysis revealed that a large proportion of these unigenes are mainly involved in the biosynthesis of phytoalexins, particularly in the biosynthetic pathways of terpenoids and flavonoids. Subsequent real‐time polymerase chain reaction (PCR) analysis showed that the terpenoid and flavonoid synthesis‐related genes showed higher expression levels in a resistant genotype of A. duranensis than in a susceptible genotype, indicating that the terpenoids and flavonoids probably played a fundamental role in the resistance of A. duranensis to R. solanacearum. This study provides an overview of the gene expression profile in the roots of wild Arachis species in response to R. solanacearum infection. Moreover, the related candidate genes are also valuable for the further study of the molecular mechanisms of resistance to R. solanacearum.     

The gene flow and mode of reproduction of Dothistroma septosporum in the Czech Republic

Since 1911, dothistroma needle blight, caused by Dothistroma septosporum, has been recorded in most European countries. In the Czech Republic, the fungus has become an important disease of pines since 2000, especially Austrian pines in plantations of Christmas and ornamental trees. The aim of this study was to analyse the population structure, gene flow and mode of reproduction of this pathogen. Microsatellite and mating‐type markers were analysed in a Dothistroma population in the southeastern part of the country using reference isolates from other European countries. The haplotypic diversity was high, with 87 unique and 13 shared haplotypes (probable clones) identified in 121 samples. Based on structure analysis, the isolates were divided into two populations, with an uneven distribution over the sampling sites. The grouping of the sites to the populations did not follow a geographical pattern because certain isolates that were sympatrically co‐occurring at the same site were placed in different populations. Tests for random mating (the index of association and a parsimony tree‐length permutation test) showed a significant clonal mode of reproduction in most cases, but the intrapopulation haplotypic diversity is unexpectedly high. Although a teleomorphic stage of D. septosporum has not been previously observed in the Czech Republic, the high intrapopulation haplotypic diversity can be explained by infrequent sexual reproduction consistent with the occurrence of both mating types.     

Modelling the effects of herbicide dose and weed density on rice‐weed competition

The effects of herbicide dose on rice‐weed competition were investigated to develop a combined model, which can be utilised to estimate an optimum herbicide dose for a given weed density in paddy rice cultivation. Field studies were conducted in Suwon for rice‐Echinochloa crus‐galli competition and Iksan for rice‐Eleocharis kuroguwai during 2007. The competitive effect of the weeds E. crus‐galli and E. kuroguwai decreased with increasing doses of flucetosulfuron and azimsulfuron, respectively, in the same manner as the standard dose–response curve. The combination of the rectangular hyperbolic model and the standard dose–response curve adequately described the complex effects of herbicide dose and weed competition on rice yield. Parameter estimates were used with the model to predict rice yield and estimate the doses of flucetosulfuron and azimsulfuron required to restrict rice yield loss caused by E. crus‐galli and E. kuroguwai, respectively, to an acceptable level. For a rice yield of 5.0 t ha^?1, the model recommended flucetosulfuron doses of 8.7, 13.4 and 20.1 g a.i. ha^?1 when infested with E. crus‐galli at 12, 24 and 48 plants m^?2 respectively. For a rice yield of 5.2 t ha^?1, the model recommended azimsulfuron doses of 3.9, 7.5 and 12.6 g a.i. ha^?1 when infested with E. kuroguwai at 24, 48 and 96 plants m^?2 respectively. The theoretical outputs of the combined model appear robust and indicate there are opportunities for reduced herbicide use in the field. These now require evaluation under field conditions.     

Characterization and functional analysis of clpB gene from Acidovorax avenae subsp. avenae RS‐1

The type VI secretion system (T6SS) has been reported to be highly associated with various cellular activities in strain RS‐1 of Acidovorax avenae subsp. avenae (Aaa), the pathogen of bacterial brown stripe of rice. However, the role of the clpB gene that presents in the T6SS gene cluster in Aaa pathogenicity has not been clarified. The aim of the current study was to characterize the function of clpB and to investigate its contribution to bacterial pathogenesis using insertional deletion mutation and complementation approaches. The results indicated that mutation of clpB significantly affected bacterial growth, virulence, exopolysaccharide (EPS) production, biofilm formation and expression of 13 other T6SS genes of Aaa RS‐1. The reduction of virulence may be also partially due to the change in EPS composition, which was characterized by the Fourier transform infrared (FTIR) spectra. Furthermore, analysis of protein homology modelling showed that the structure of ClpB is different from those of the other T6SS components. In addition, structural difference was observed between ClpB and Type IV pili (TFP) as well as Type IV pilus biogenesis proteins (PilP), whose functions are similar to ClpB. Taken together, this study demonstrated that the clpB gene plays a key role in Aaa bacterial virulence.     

Weed–pathogen interactions and elevated CO2: growth changes in favour of the biological control agent

In this study, we used Parthenium hysterophorus and one of its biological control agents, the winter rust (Puccinia abrupta var. partheniicola) as a model system to investigate how the weed may respond to infection under a climate change scenario involving an elevated atmospheric CO₂ (550 μmol mol^?1) concentration. Under such a scenario, P. hysterophorus plants grew significantly taller (52%) and produced more biomass (55%) than under the ambient atmospheric CO₂ concentration (380 μmol mol^?1). Following winter rust infection, biomass production was reduced by 17% under the ambient and by 30% under the elevated atmospheric CO₂ concentration. The production of branches and leaf area was significantly increased by 62% and 120%, under the elevated as compared with ambient CO₂ concentration, but unaffected by rust infection under either condition. The photosynthesis and water use efficiency (WUE) of P. hysterophorus plants were increased by 94% and 400%, under the elevated as compared with the ambient atmospheric CO₂ concentration. However, in the rust‐infected plants, the photosynthesis and WUE decreased by 18% and 28%, respectively, under the elevated CO₂ and were unaffected by the ambient atmospheric CO₂ concentration. The results suggest that although P. hysterophorus will benefit from a future climate involving an elevation of the atmospheric CO₂ concentration, it is also likely that the winter rust will perform more effectively as a biological control agent under these same conditions.     

Comparison of root and foliar applications of potassium silicate in potentiating post‐infection defences of melon against powdery mildew

The application of silicon to the roots or leaves reduces the severity of powdery mildew (Podosphaera xanthii) in melon but the latter treatment is less effective. This study compared key biochemical defence responses of melon triggered by P. xanthii after root or foliar treatment with potassium silicate (PS). Treatments consisted of pathogen‐inoculated or mock‐inoculated plants supplied with PS via roots or foliarly, as well as a non‐treated control. The activity of defence enzymes and the concentration of phenolic compounds, lignin and malondialdehyde were determined from leaf samples at different time points after inoculation. Pathogen‐inoculated plants irrigated with PS showed both an accumulation of silicon and primed defence responses in leaves that were not observed in pathogen‐inoculated plants either sprayed with PS or not treated. These responses included the anticipated activity of peroxidase and accumulation of soluble phenols, the activation of chitinase and repression of catalase, and the stronger activation of superoxide dismutase, peroxidase and β‐1,3‐glucanase. Moreover, the lignin concentration increased in response to inoculation, whereas the malondialdehyde concentration decreased. For the foliar treatment, however, only an increase in lignin deposition was observed compared with the control plants. The results show that silicon strongly plays an active role in modulating the defence responses of melon against P. xanthii when supplied to the roots as opposed to the foliage.     

Response of photosynthesis and chlorophyll a fluorescence in leaf scald‐infected rice under influence of rhizobacteria and silicon fertilizer

Leaf scald caused by Monographella albescens reduces the photosynthetic area, causing yield losses in rice. This study investigated the efficacy of the rhizobacteria Burkholderia pyrrocinia (BRM‐32113) and Pseudomonas fluorescens (BRM‐32111), combined with silicon (Si) fertilization, to reduce lesion size and the area under the disease progress curve (AUDPC), as well as to minimize the negative effects on gas exchange, chlorophyll a fluorescence, chlorophyll content and the activity of oxidative stress enzymes. The experiment used a completely randomized design with four replications and seven treatments. Compared with plants only fertilized with Si, plants fertilized with Si and treated with BRM‐32113 showed reductions of 22% in scald lesion expansion and 37% in AUDPC, a 27% increase in the rate of CO₂ assimilation (A), a 33% decrease in the internal CO₂ concentration (C_i), and a 40% increase in ascorbate peroxidase activity. It was therefore concluded that the combination of BRM‐32113 with Si fertilization reduces the severity of leaf scald, protecting the photosynthetic apparatus, thus representing a sustainable method of reducing the loss of income caused by leaf scald in rice.     

Temperature at the early stages of Clavibacter michiganensis subsp. michiganensis infection affects bacterial canker development and virulence gene expression

Clavibacter michiganensis subsp. michiganensis (Cmm), the causal agent of bacterial canker and wilt, causes severe economic losses in tomato net‐houses and greenhouses worldwide. In this study, seedlings which were transplanted and inoculated monthly over 2 years wilted and died earlier in the spring (21–24°C) and autumn (18–23°C) than in the winter (15–18°C) and summer (28–31°C): T₅₀ (the time taken for 50% of the plants to wilt or die) was 2 and 3–4 months after inoculation, respectively. A highly significant correlation was found between the average temperatures during the first month after inoculation and T₅₀; the shortest T₅₀ mortality (70 days) was observed for an average temperature of 26°C. Expression of virulence genes (pat‐1, celA, chpC and ppaA) by Cmm was higher in plants inoculated in the spring than in those inoculated in the summer. In another set of experiments, seedlings were inoculated and maintained in controlled‐environment growth chambers for 2 weeks. Subsequently, they were transplanted and maintained in commercial‐type greenhouses for 4–5 months. The temperatures prevailing in the first 48 h after inoculation were found to affect Cmm population size and virulence gene expression and to have season‐long effects on bacterial canker development.     

Effects of leaf position on reflectance,transmittance and absorption of red and far‐red light in tomato,Chenopodium album and Amaranthus retroflexus leaves

Leaf optical properties can play an important role in determining the red/far‐red light ratio, a signal of impending competition, in plant canopies. Knowledge of leaf optical properties and factors affecting them is important in understanding of the impacts of red/far‐red ratio in agroecosystems. Effects of leaf position on the plant stem on their optical properties at 660 and 730 nm were studied in tomato and two weeds Chenopodium album and Amaranthus retroflexus. Leaf position on stem strongly influenced leaf optical properties. Reflectance and transmittance were generally lower for the C. album and A. retroflexus leaves at higher positions on the stem, except for reflectance at 730 nm in C. album, which did not change. Reflectance was not affected in tomato. Transmittance generally decreased for leaves at higher positions. Red/far‐red ratios of reflected (R_ratio) and transmitted (T_ratio) light generally decreased in all species, except R_ratio in tomato, where it increased slightly at higher positions. These effects were greater in A. retroflexus compared with C. album and tomato. Changes in these ratios were partly explained by chlorophyll content and leaf mass per area. The results show that leaf position on plant stem influences leaf optical properties in tomato and two weeds and this effect differed between species. These influences and the differences among species could modify red/far‐red ratios in canopies comprising these species, which could influence their growth and inter‐plant interactions.     

Role of co‐infection by Pectobacterium and Verticillium dahliae in the development of early dying and aerial stem rot of Russet Burbank potato

Potato early dying (PED) is a disease complex primarily caused by the fungus Verticillium dahliae. Pectolytic bacteria in the genus Pectobacterium can also cause PED symptoms as well as aerial stem rot (ASR) of potato. Both pathogens can be present in potato production settings, but it is not entirely clear if additive or synergistic interactions occur during co‐infection of potato. The objective of this study was to determine if co‐infection by V. dahliae and Pectobacterium results in greater PED or ASR severity using a greenhouse assay and quantitative real‐time PCR to quantify pathogen levels in planta. PED symptoms caused by Pectobacterium carotovorum subsp. carotovorum isolate Ec101 or V. dahliae isolate 653 alone included wilt, chlorosis and senescence and were nearly indistinguishable. Pectobacterium wasabiae isolate PwO405 caused ASR symptoms including water‐soaked lesions and necrosis. Greater Pectobacterium levels were detected in plants inoculated with PwO405 compared to Ec101, suggesting that ASR can result in high Pectobacterium populations in potato stems. Significant additive or synergistic effects were not observed following co‐inoculation with these strains of V. dahliae and Pectobacterium. However, infection coefficients of V. dahliae and Ec101 were higher and premature senescence was greater in plants co‐inoculated with both pathogens compared to either pathogen alone in both trials, and V. dahliae levels were greater in basal stems of plants co‐inoculated with either Pectobacterium isolate. Overall, these results indicate that although co‐infection by Pectobacterium and V. dahliae does not always result in significant additive or synergistic interactions in potato, co‐infection can increase PED severity.