Variability in movement dynamics of topminnow (Fundulus notatus and F. olivaceus) populations

Abstract – Movement and dispersal patterns are key biological processes across a range of organisational levels. The Fundulus notatus species complex includes several species with similar ecological niches that exhibit broadly overlapping ranges. We conducted a mark–recapture study on two of the most widely distributed members of this species complex to improve our understanding of their movement and habitat use. A population of F. notatus was studied between June and August of 2008 and 2009 in Cahokia Creek, a small tributary of the Mississippi River in Illinois, along with a parallel study of Fundulus olivaceus between May and July of 2009 in Big Creek, a tributary of the Pascagoula River in Mississippi. Fish were recaptured approximately weekly, and habitat variables were measured. Estimated daily movement rates varied significantly both between locations and between years. Fundulus olivaceus in Big Creek moved <1 m per day, while F. notatus in Cahokia Creek in 2009 moved nearly 23 m per day. The distribution of movements was strongly leptokurtic in all three data sets. Differences in movement rates were attributed to significant differences in population size and habitat characteristics. Our data did not support the hypothesis that populations consist of distinct mobile and resident components. Instead, individual fish went through periods of little or no movement followed by extensive movement (consistent with the home range shift model of fish movement). We discuss the implications these results have for contact zone dynamics between these two species.     

Differential responses of body shape to local and reach scale stream flow in two freshwater fish species

Stream flow is recognised as an important influence on the physical traits, distribution and diversity of stream fishes. However, measures of ‘stream flow’ are not consistent among studies and can refer to variables characterising microhabitat (e.g. flow velocity) or reach‐level (e.g. discharge) parameters. Because of the ambiguity associated with the term ‘stream flow’, the differential effect of these two aspects of local stream hydrology on freshwater fishes is unclear. Using two frequently sympatric freshwater fish species, Etheostoma nigrum and Pimephales notatus, we tested for correlations between population‐level body shape and two measures of stream flow, microhabitat flow velocity (m/s) and reach‐level discharge (m³·s^?1). Etheostoma nigrum body shape was correlated with flow velocity, while P. notatus body shape was correlated with mean annual discharge. The respective correlations are potentially manifestations of behavioural differences among the two species. Etheostoma nigrum is a benthic specialist rarely venturing far from its associated microhabitats. Pimephales notatus is a habitat generalist and uses many different microhabitats but is unable to escape the overall discharge pressures of a particular stream. These results demonstrate the importance of considering the spatial scale of variables when predicting phenotype–environment associations.     

Microhabitat preferences of fish assemblages in the Udzungwa Mountains (Eastern Africa)

Environmental flow assessment (EFA) involving microhabitat preference models is a common approach to set ecologically friendly flow regimes in territories with ongoing or planned projects to develop river basins, such as many rivers of Eastern Africa. However, habitat requirements of many African fish species are poorly studied, which may impair EFAs. This study investigated habitat preferences of fish assemblages, based on species presence–absence data from 300 microhabitats collected in two tributaries of the Kilombero River (Tanzania), aiming to disentangle differences in habitat preferences of African species at two levels: assemblage (i.e. between tributaries) and species (i.e. species‐specific habitat preferences). Overall, flow velocity, which implies coarser substrates and shallower microhabitats, emerged as the most important driver responsible of the changes in stream‐dwelling assemblages at the microhabitat scale. At the assemblage level, we identified two important groups of species according to habitat preferences: (a) cover‐orientated and limnophilic species, including Barbus spp., Mormyridae and Chiloglanis deckenii, and (b) rheophilic species, including Labeo cylindricus, Amphilius uranoscopus and Parakneria spekii. Rheophilic species preferred boulders, fast flow velocity and deeper microhabitats. At the species level, we identified species‐specific habitat preferences. For instance, Barbus spp. preferred low flow velocity shallow depth and fine‐to‐medium substratum, whereas L. cylindricus and P. spekii mainly selected shallow microhabitats with coarse substrata. Knowledge of habitat preferences of these assemblages and species should enhance the implementation of ongoing and future EFA studies of the region.     

Spatial differences across the French Pyrenees in the use of local habitat by the endangered semi‐aquatic Pyrenean desman (Galemys pyrenaicus)

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Genetic diversity and population history of Tanichthys albonubes (Teleostei: Cyprinidae): Implications for conservation

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Mitochondrial DNA variation in the East China Sea and Yellow Sea populations of Japanese Spanish mackerel <Emphasis Type="Italic">Scomberomorus niphonius</Emphasis>

Japanese Spanish mackerel Scomberomorus niphonius is a commercially important species in the East China Sea and Yellow Sea, but there is limited knowledge of its genetic population structure. In order to detect its genetic structure, sequence variation of the first hypervariable segment of the control region was analyzed among eight populations of S. niphonius from the East China Sea and Yellow Sea. A total of 119 polymorphic sites were detected in the 505-bp segment of the control region among 134 individuals of S. niphonius, defining 112 haplotypes. Mean haplotype diversity and nucleotide diversity for the eight populations were 0.9963 ± 0.0017 and 0.0236 ± 0.0119, respectively. As expected, analysis of molecular variance detected no significant differences at all hierarchical levels, and most of the conventional population Φ_ST statistics were negative, indicating that no significant population genetic structure exists in the East China Sea and Yellow Sea. Moreover, the exact test of differentiation supported the null hypothesis that S. niphonius within the East China Sea and Yellow Sea constitutes a panmictic mtDNA gene pool. Neutrality tests and mismatch distribution revealed that S. niphonius underwent population expansion in the late Pleistocene. Strong dispersal capacity of larvae and adults, long-distance migrations, and ocean currents in the studied area could be the reasons for genetic homogeneity in this species in the East China Sea and Yellow Sea. Insufficient time to accumulate genetic variation might be another explanation for the lack of genetic structure in the East China Sea and Yellow Sea.     

Wild stock structure of <Emphasis Type="Italic">Girella punctata</Emphasis> in Japan revealed shallow genetic differentiation but subtle substructure in subsidiary distributions

Twelve populations of Girella punctata, from widespread locations of the species’ range in Japan and Korea, were screened for sequence variability within the mitochondrial DNA (mtDNA) control region (n = 128) and at five polymorphic microsatellite loci (n = 547) to determine the genetic structure maintaining population integrity. mtDNA variability of 132 variable sites within a 334-bp region reveals shallow genetic differentiation across populations. The weak differentiation of G. punctata was partly supported by the screening of five polymorphic microsatellite loci. However, hierarchical analysis of molecular variance and principal component analysis on the basis of allele frequencies in microsatellite loci extracted a subtle substructure in a subsidiary population and in near-subsidiary populations in the semi-enclosed Seto Inland Sea.     

Genetic characteristics of Pacific cod populations in Korea based on microsatellite markers

Pacific cod (Gadus macrocephalus) is a commercially important species in Korea. However, overfishing in the 1990s caused a strong decline in catch, and in response, artificially cultured juveniles have been released annually to enhance the stocks. Cod fishing has recently increased in Korea, and the variation within the cod population necessitates the study of their genetic characteristics. In this study, we utilized two newly developed and eight previously reported microsatellite markers to examine the genetic characteristics of Pacific cod populations. We compared the genetic diversity and genetic structure of three cod populations from the Korean coasts with three populations from the North Pacific Ocean. Genetic differences were identified in the eastern sea cod population from Korea. These genetic differences included a large number of alleles per locus, a large number of unique alleles, higher frequencies of the most common alleles, and lower gene diversity compared to the other Korean populations. Additionally, the eastern sea cod population was genetically significantly differentiated from the southern and western sea populations in Korea, in which no significant genetic differentiation was detected (F _ST = 0.033 and 0.031, respectively, P < 0.005).     

Long‐term changes in the distribution and core habitat use of a coastal delphinid in response to anthropogenic coastal alterations

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Lack of genetic population structure of slimy sculpin in a large,fragmented lake

Most of what is known about sculpin population structure comes from research in streams; however, slimy sculpins are also a common benthic species in deep lakes. In streams, sculpins are considered to be a relatively inactive species, moving only small distances, and characteristically have high levels of genetic structure. We examined population genetic structure of slimy sculpin (Cottus cognatus) across multiple barriers and over distances up to 227 km in Lake Champlain (USA, Canada) and Lake Ontario (USA, Canada) to determine whether lake populations of sculpin are also highly structured. We predicted that slimy sculpin populations in Lake Champlain would be structured by six causeways as well as by distance, Lake Ontario populations would be structured only by distance, and differences between the lakes would be large relative to within‐lake differences. We examined microsatellite variation among 200 slimy sculpins from Lake Champlain and 48 slimy sculpins from Lake Ontario to evaluate patterns of population connectivity and structure. There was no indication of population substructuring within either lake but sculpin were genetically distinct between lakes. We conclude that there is a single, panmictic population of sculpin present in Lake Champlain and another potentially panmictic population in Lake Ontario, with no indication of genetic isolation by distance. Our results contrast with data from sculpin in streams, suggesting distance and habitat fragmentation exert little influence on population connectivity of benthic fish in lakes.     

High genetic diversity and lack of pronounced population structure in five species of sympatric Pacific eels

Understanding the population structure of tropical anguillids residing in the Pacific is vital for their conservation management. Here, the population genetic structure of five sympatric freshwater eels (Anguilla marmorata Quoy & Gaimard, A. megastoma Kaup, A. obscura Steindachner, A. reinhardtii Günther and A. australis Richardson) across 11 western South Pacific (WSP) islands was investigated based on partial nucleotide sequences of the mtDNA control region and the nuclear GTH2b genes of 288 newly collected samples jointly with existing sequences. WSP anguillids are characterised by overall high levels of genetic diversity. Both mtDNA and nuclear sequences provided no evidence for distinct geographic clines or barriers in any of the species across the WSP. The occurrence of admixed individuals between A. marmorata and A. megastoma was confirmed, and a new possible occurrence of a further species was revealed (A. interioris Whitley on Bougainville Island). All species showed evidence for demographic population growth in the Pleistocene, and a subsequent population reduction for A. megastoma. Common spawning grounds and mixing of larvae by ocean currents could promote the lack of pronounced isolation by distance, a finding that has significant implications for the future management of anguillids in the area.     

A new map of the tiger shark (Galeocerdo cuvier) genetic population structure in the western Atlantic Ocean: Hypothesis of an equatorial convergence centre

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Genetic connectivity and phylogeography of the night shark (Carcharhinus signatus) in the western Atlantic Ocean: Implications for conservation management

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Genetic relatedness and differentiation of hatchery populations of Asian seabass (Lates calcarifer) (Bloch, 1790) broodstock in Thailand inferred from microsatellite genetic markers

After more than 20 years of hatchery production of Asian seabass in Thailand, genetic information is still lacking for effective genetic management and a selective breeding programme. This study aimed to evaluate genetic status of existing hatchery populations and genetic consequences of a selective breeding attempt. We examined genetic relatedness in seven hatchery samples, including a selectively bred population (RACF‐F1), compared with three wild samples using 11 microsatellite loci. Genetic diversity and relatedness values within most hatchery samples, except for RACF‐F1, did not differ from those of wild populations (P > 0.05). RACF‐F1 had the lowest allelic diversity and effective population size (A_r = 6.99; N_e = 7.8) and highest relatedness values (mean r_xy = 0.075–0.204). Pairwise Φ_ST values, principal component analysis and model‐based cluster analyses revealed three genetically distinct hatchery groups: Eastern Thailand (CHN, RACF, NSCF and SKCF), Southern Thailand (NICA) and the Andaman Sea (STCF). Results suggest that exiting domestic populations capture reasonable amount of genetic variation and can be useful for a base population for genetic improvement programmes. In addition, given the rapid increase in relatedness that we observed in one selectively bred population, we recommend using selection methods and hatchery practices that reduce variability in family contribution in the subsequent generations.     

Genetic diversity of two Philippine native freshwater goby species (Perciformes: Gobiidae): implications for conservation

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Induction of diploid gynogenesis in turbot <Emphasis Type="Italic">Scophthalmus maximus</Emphasis> with left-eyed flounder <Emphasis Type="Italic">Paralichthys olivaceus</Emphasis> sperm

Turbot Scophthalmus maximus exhibits sexually dimorphic growth, with females growing faster and reaching larger adult sizes than males. Thus, development of techniques for preferentially producing females is necessary to optimize production of these species. In this paper, gynogenetic diploids of turbot were induced by activating egg development with ultraviolet (UV)-irradiated left-eyed flounder Paralichthys olivaceus sperm combined with cold shock to prevent extrusion of the second polar body. The results of UV irradiation experiments showed that survival, motility, and duration of activity of P. olivaceus sperm generally decreased with increase in UV dose. The typical Hertwig’s effect was observed after fertilized turbot eggs with UV-irradiated P. olivaceus sperm and the optimal UV dose for gynogenetic haploid production was 36,000 erg mm⁻². At 15°C, appropriate timing of cold shock for retention of the second polar body in turbot eggs was at 6 min after fertilization. Results of different combinations of two shock temperatures (1 or 3°C) and four shock durations (15, 25, 35 or 45 min) at 6 min after fertilization demonstrated that shock of 25 min at 1°C gave the highest production of diploid gynogens (39.58% relative to its diploid control). The results of this study reveal that the use of UV-irradiated P. olivaceus sperm for activation of turbot eggs and cold shock for polar body retention is an effective method to produce gynogenetic offspring.     

Contextualizing the relative importance of habitat connectivity for metapopulation persistence: A case study of a critically endangered fish

1. Local population characteristics and habitat connectivity both have important influences on metapopulation persistence; however, the relative importance of each can vary depending on the ecological context, making it difficult to apply general ‘rules-of-thumb’ for conservation actions. This is particularly true in dendritic networks, where habitat connections are constrained.
2. By constructing a metapopulation model that specifically accounts for the unique characteristics and ecological system of a target species, the relative influence of local population characteristics and habitat connectivity on metapopulation persistence can be assessed more accurately.
3. This modelling approach was used to improve conservation outcomes for the Canterbury mudfish (kо̄waro Neochanna burrowsius), a critically endangered and poorly understood species that is endemic to the Canterbury Plains of Aotearoa/New Zealand. A spatially structured metapopulation model of N. burrowsius was used to investigate the relationship between habitat patch connectivity, rate of population growth as limited by habitat quality (r_conditional), and metapopulation persistence.
4. N. burrowsius metapopulation persistence increased most strongly under increases in r_conditional, but increases in habitat connectivity also had positive effects (94% metapopulation persistence for highly connected networks vs. 39% metapopulation persistence for poorly connected networks where r_conditional = 1.3).
5. Although rates of population growth were more influential than increases in habitat connectivity in this case study, both will be important to consider for effectively allocating conservation resources for metapopulations in dendritic networks, depending on what managers could effectively manipulate to enhance metapopulation persistence.

     

Spatial dynamics of beetles living on exposed riverine sediments in the upper River Severn: method development and preliminary results

• 1. Exposed riverine sediments (ERS) are habitats for a large number of rare and specialized invertebrates and, as such, are of considerable conservation importance. Actions that threaten ERS specialists operate on a variety of scales and include river engineering, flow regulation and livestock damage. Populations of specific species of ERS specialist beetles are likely to exhibit individual responses to these threats, depending on the spatial structure and dynamics of the population. An understanding of the spatial dynamics of ERS specialist beetles is, therefore, essential if conservation initiatives are to be successful.
• 2. A mark–recapture experiment was used to investigate the spatial dynamics of beetles on a section of the upper River Severn, mid‐Wales, during June and August 2002. Two species of carabid, Bembidion atrocaeruleum Stephens and Bembidion decorum (Zenker), and one elaterid, Fleutiauxellus maritimus (Curtis), were individually marked and released on one of nine discrete patches of ERS demonstrating a range of patch size, sediment size, habitat heterogeneity, degree of shading, vegetation cover and grazing intensity. The methods used to trap, handle and individually mark beetles were all found to be suitable.
• 3. Population size of B. atrocaeruleum was mainly determined by ERS patch size, suggesting that, in contrast to F. maritimus, this species used all ERS microhabitats.
• 4. During the June study, 5.7% of marked and recaptured B. atrocaeruleum and 10% of marked and recaptured B. decorum actively moved between ERS patches over water or through thick vegetation in both upstream and downstream directions. Inter‐patch movements of >65 m for B. atrocaeruleum and >135 m for B. decorum were detected. Movement rates in August were lower. F. maritimus showed no evidence of inter‐patch movement.
• 5. The lower rate of dispersal and more specific habitat requirements are postulated as reasons for the greater rarity of F. maritimus.

Copyright © 2004 John Wiley & Sons, Ltd.     

Population structure of the critically endangered Brazilian guitarfish Pseudobatos horkelii (Rhinobatidae) revealed by double-digest restriction site-associated DNA sequencing

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Going,going, gone? Loss of genetic diversity in two critically endangered Australian freshwater fishes,Scaturiginichthys vermeilipinnis and Chlamydogobius squamigenus,from Great Artesian Basin springs at Edgbaston,Queensland, Australia

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