Microbial methylation of mercury in upper Wisconsin river sediments

The microbial methylation of Hg was studied in water and sediments from the Upper Wisconsin River by quantifying the methylation of radioactive Hg(II) (²⁰³Hg[NO₃]₂). Methylation activity was near detection limits in the water, highest in surface sediments (0 to 4 cm), and decreased with increasing sediment depth. Methylation had a temperature optimum of 35 °C. Organically enriched sediments exhibited higher methylation activity than less eutrophic sediments. Methylation activity in sediments was stimulated by the addition of peptone but not by glucose or starch. Oxygenation of sediments inhibited methylation activity. A summertime peak in methylation activity, observed in water, floc, and sediments, was related to factors other than temperature. More than 98% of the added ²⁰³Hg(II) was bound to sediments within 4 hr of inoculation, while more than 3% was methylated during a 10-day incubation. As much as 7% of the added ²⁰³Hg(II) was methylated in other experiments, suggesting that bound Hg is available for methylation. These data suggest that organic-rich surficial sediments in the Upper Wisconsin River have the potential to produce significant amounts of toxic methylmercury during late summer months.     

Effect of rice plant growth on denitrification in rhizosphere soil

The effect of rice plant growth on the loss of basal nitrogen (N) through denitrification in the rhizosphere of subsurface soil was investigated by the ¹⁵N balance method. Labeled ¹⁵N was applied to the deep soil layer to distinguish between the N losses in the surface and subsurface soils. Denitrification in pots with whole plants (Control) was compared with that in pots with plants cut off at the base of the culm (Pcut) to evaluate the effect of plant growth on denitrification. The upward movement of the applied ¹⁵N from the deep soil was negligible. Thus, the amount of unrecovered ¹⁵N was equal to the amount of N lost through denitrification in the rhizosphere of the subsurface soil (20–150 mm soil depth). In the Control treatment, values of redox potential at 50 and 90 mm soil depths were negative throughout the experimental period. Therefore, it was assumed that the redox potential could not have been the limiting factor for the N loss through denitrification in this experiment. The α-naphthylamine-oxidizing activity of roots decreased drastically after the cutting treatment. The estimated amount of de nitrified ¹⁵N in the rhizosphere of the subsurface soil was significantly higher in the Pcut treatment than in the Control one at 30 and 40 d after transplanting (DAT), while it was comparable in the two treatments at 52 and 64 DAT. Since a greater amount of ¹⁵N loss was found to occur when there was no absorption of ¹⁵N by the plants, the absorption of ¹⁵N by plants may have contributed to the suppression of denitrification. The amount of immobilized ¹⁵N in the Control treatment was larger than that of the Pcut treatment throughout the experiment. N immobilization might have also contributed to the suppression of denitrification in the rhizosphere of the subsurface soil.     

Effects of glyphosate on rhizosphere soil microbial communities under two different plant compositions by cultivation-dependent and -independent methodologies

We studied, under two different plant compositions, the short-term effects of glyphosate on rhizosphere soil microbial communities through the utilization of cultivation-dependent and -independent techniques. A short-term pot study was carried out using factorial treatments that included two different compositions of forage plant species (triticale versus a mixture of triticale and pea) and two concentrations of glyphosate (50 and 500 mg active ingredient kg⁻¹ soil, as a commercial formulation, Roundup Plus) arranged in a completely randomized design experiment with four replicates. Control plants (no glyphosate added) were clipped in an attempt to compare two methods of weed control (manual = clipping; chemical = herbicide treatment). Rhizosphere soil was sampled 15 and 30 days after glyphosate treatment and the following soil components were determined: potentially mineralizable nitrogen, ammonium content, community-level physiological profiles using Biolog Ecoplates™, DNA microbial biomass and genotype diversity by means of PCR-DGGE. Fifteen days after herbicide treatment, a glyphosate-induced stimulation of the activity and functional diversity of the cultivable portion of the heterotrophic soil microbial community was observed, most likely due to glyphosate acting as an available source of C, N and P. On the other hand, 30 days after herbicide treatment, both the activity and diversity of the rhizosphere soil microbial communities showed an inconsistent response to glyphosate addition. Apart from its intended effect on plants, glyphosate had non-target effects on the rhizosphere soil microbial community which were, interestingly, more enhanced in triticale than in “triticale + pea” pots. Biolog™ was more sensitive than PCR-DGGE to detect changes in soil microbial communities induced by glyphosate and plant composition.     

Phthalic acid esters in the rhizosphere sediments of emergent plants from two shallow lakes

Purpose

We investigated the effect of growth strategy (i.e., single or mixed plant types) of two emergent plants (i.e., Phragmites australis and Typha orientalis) on the distribution of phthalic acid esters (PAEs) and their monoester metabolites (PAMs) in the sediments and roots in two adjacent shallow lakes in Tianjin, China, as well as the removal of PAEs from the sediments.

Materials and methods

Dibutyl phthalate (DBP), di-2-ethylhexyl phthalate (DEHP), and their PAMs were measured in sediments and roots sampled on 18th May 2010. PAE-degrading bacteria and phospholipid fatty acid (PLFA) of the sediment samples were also analyzed.

Results and discussion

The results showed that DBP, DEHP, and their PAMs were detected in nearly all of the samples, and the PAE concentrations were 1 to 2 orders of magnitude higher than those of their corresponding monoester metabolites. The PAE distribution patterns in sediments from the two lakes were different and influenced by plant growth strategy. Phytoavailability of PAEs was also affected by plant growth strategy.

Conclusions

Compared with the non-rhizosphere sediments, the total organic carbon-normalized PAE concentration in the rhizosphere sediments decreased in the presence of the emergent plants. The PAE removal from the rhizosphere sediments was related not only to plant species but also to growth strategy, which was consistent with the findings of PLFA. The enhancement of PAE biodegradation in the rhizosphere was mainly the result of changes in the microbial community structure for different plant species and in microbial biomass for the same plant species.     

The impacts of individual plant species on rhizosphere microbial communities in soils of different fertility

To investigate the effects of individual plant species on microbial community properties in soils of differing fertility, a microcosm experiment was carried out using plant species representative of the dominant flora in semi-fertile temperate grasslands of northern England. Soil microbial biomass and activity were found to be significantly greater in the more fertile, agriculturally improved soil than in the less productive unimproved meadow soil. Differences in microbial community structure were also evident between the two soils, with fungal abundance being greater in the unimproved soil type. Individual plant species effects significantly differed between the two soils. Holcus lanatus and Anthoxanthum odoratum stimulated microbial biomass in the improved soil type, but negatively affected this measure in the unimproved soil. In both soil types, herb species generally had negative effects on microbial biomass. Patterns for microbial activity were less consistent, but as with microbial biomass, A. odoratum and H. lanatus promoted respiration, whereas the herbs negatively affected this measure. All plant species grown in the improved soil increased the abundance of fatty acids synthesised by bacteria (bacterial phospholipid fatty acid analysis) relative to bare soil, but they negatively impacted on this group of fatty acids in unimproved soil. Similarly, the abundance of the fungal fatty acid 18:26 was increased by all plants in the more fertile improved soil only, albeit non-significantly. Our data indicate that effects of plant species on microbial properties differ markedly in soils of differing fertility, making general predictions about how individual plants impact on soil properties difficult to make.     

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

In soil, some specific bacterial populations, called plant growth-promoting rhizobacteria are able to promote plant growth and/or reduce the incidence of soil-borne diseases. Rhizosphere competence is an important prerequisite for the efficacy of these biocontrol strains. Therefore, over decades, multiple approaches have been combined to understand the molecular basis of bacterial traits involved in rhizosphere competence. This review addresses the bacterial genes expressed during bacterial–plant interactions in the rhizosphere of different plant species. The distribution of these key genes in natural populations of rhizobacteria is also discussed.     

不同形态无机磷对两种磷效率小麦根际特征的影响

以磷高效型小麦小偃54和磷低效型小麦京411为材料的砂培试验,通过测定植株生物量及吸磷量、根系形态特征、根际pH、磷酸酶活性,研究不同形态无机磷WP(KH2PO4),Al-P(AlPO4)和Fe-P(FePO4)对两种磷效率小麦根际特征的影响.结果表明,在WP处理下,两种磷效率小麦的地上部吸磷量、总吸磷量和磷吸收效率均显著高于其它处理,而其根冠比和磷利用效率却低于其他处理.除了根部吸磷量,小偃54的生物量和吸磷量有高于京411的趋势.除了WP处理,其他处理的小偃54的根冠比和地下吸磷量均高于京411.所有处理的小偃54的根长和根体积均显著高于京411,且不施磷条件(PO)下更为明显,小偃54根系长度是京411的1.6倍;此外,小偃54根系磷酸酶活性均比京411弱.除Al-P外,小偃54的根际酸化能力较京411强.由此可见,磷胁迫条件下,磷高效小麦根系形态特征改变是根际磷活化的主要机理之一,且受磷水平、磷形态及其溶解性的影响.     

In Situ extraction of rhizosphere organic compounds from contrasting plant communities

Abstract

Currently there is no effective method for capture, identification and quantification of root exudates and rhizosphere secondary metabolites in situ. The purpose of the work reported was to assess if capsules containing non‐ionic carbonaceous resins could be used to non‐destructively sample and compare rhizosphere organic compounds associated with contrasting plant communities. Polyester capsules (Unibest, Inc., Bozeman, MT) containing non‐ionic carbonaceous resins, Ambersorb 563 or XAD‐7 (Rohm and Haas, Inc.), were placed within the rhizosphere of spotted knapweed (Centaurea maculosa), and the native grass, Idaho fescue (Festuca idahoensis), as well as a bare‐soil control in both greenhouse and field studies. At the end a 14‐day period, resins were removed and extracted with sequential elution by water, 50% methanol, and 100% methanol. The eluent fractions were then analyzed for total organic carbon (TOC), total hexose sugars as anthrone reactive carbon (ARC), and total phenols. Samples were then concentrated by rotary evaporating to dryness and analyzed on HPLC equipped with a C‐18 column and tunable ultra‐violet (UV) detector or a photodiode array (PDA) detector. Ambersorb 563 resin extracts from greenhouse and field trials consistently showed 2 times more soluble C and 3–7 times more total soluble sugars in the rhizosphere of knapweed compared to Idaho fescue during the 1996 and 1997 field seasons. This difference was not observed using the XAD‐7 resins during the rather wet field season of 1998. In these studies fescue was found to release higher levels of sugars than knapweed, but not significantly different than control soils. Compounds sorbed to the resins from the knapweed rhizosphere were more effectively eluted by methanol than water and demonstrated both the presence of carbohydrate groups and UV absorption. The XAD‐7 resins allow for sorption of phenolic compounds similar to that of Ambersorb 563, but allow for far greater desorption of these compounds. Non‐ionic resins may provide an effective means of capturing rhizosphere organic compounds in situ, but the low concentrations of sorbed compounds may limit their utility.     

Mercury methylation by sulphate-reducing bacteria from sediments of an acid stressed lake

The role of freshwater sulphate-reducing bacteria in McHg production was examined by adding specific microbial inhibitors to anoxic lake sediments spiked with ²⁰³HgCl₂ and measuring net methylation. The effect of increased sulphate (such as would arise from acid deposition in the area) on the activity of sulphate-reducing bacteria both in terms of sulphate reduction rate and methylation of Hg was examined by adding sulphate to ²⁰³HgCl₂ spiked sediments. Sodium molybdate (10 mM), a specific inhibitor for sulphate-reducing bacteria, reduced the amount of MeHg produced from anoxic lake sediments by 75% compared with controls over a 7 d period. In contrast, 2-bromoethane sulfonic acid (15 mM), a specific inhibitor for methanogenic bacteria, did not alter the amount of McHg produced. Additions of sulphate that were “realistic” in terms of the normal range of the area (5 to 30 mg.L^?), increased the sulphate reduction rate of sediment slurries. However, in the experimental system, these additions did not stimulate McHg production. In our study, methylation of Hg in sediments was primarily due to the activity of sulphate-reducing bacteria. However, the methylation rate does not appear to be sensitive to the concentration of sulphate over the range typical of softwater, Precambrian Shield lakes. This could be due to reduced availability of Hg due to the formation of insoluble HgS or to the fact that the overall activity of sulphate reducers not being stimulated even if sulphate reduction rate is, or both.     

The importance of geological controls on the natural distribution of mercury in lake and stream sediments across Canada

The Geological Survey of Canada (GSC) has surveyed a significant portion of Canada using systematic stream and lake surveys under the National Geochemical Reconnaissance (NGR) program. Total mercury (Hg) data, available for most of the sites, reveal significant natural variation. Much of the observed variation in Hg concentration can be directly related to the composition of the bedrock, regolith and glacial deposits in the surrounding watershed. Some of the highest Hg values within the sediments of Ontario lakes occur southwest of Thunder Bay in an area underlain by shales known to be naturally enriched in Hg and other trace metals.     

Controls on microbial mercury transformations in contaminated sediments downstream of the Idrija mercury mine (West Slovenia) to the Gulf of Trieste (northern Adriatic)

Purpose

Concentrations and transformations of mercury were measured in river, estuarine, and marine sediments to determine factors affecting the fate of mercury entering the northern Adriatic Sea.

Materials and methods

Radiotracer methodology was used to compare rates of mercury methylation (²⁰³Hg), MeHg demethylation (¹⁴C), and sulfate reduction (³⁵S) in sediment depth profiles to concentrations of total and dissolved mercury species in the lower freshwater region of the Isonzo River, the coastal lagoons, and in the Gulf of Trieste, northern Adriatic Sea.

Results and discussion

Mercury was readily methylated and demethylated in all sediments, but the relative activity of these processes varied greatly with location. Methylation activity increased greatly from freshwater to the marine regions; however, demethylation was extremely high in the estuarine and lagoon sites. Ratios of methylation to demethylation were low in these coastal sites but increased further offshore in the gulf, which agreed with increased ratios of MeHg to total Hg (%MeHg) in gulf sediments. Comparisons of microbial activities indicated that sulfate reduction strongly controlled both methylation and demethylation. However, Hg methylation in coastal lagoon sediments was controlled by rapid demethylation and the bioavailability of Hg that was affected by Hg adsorption and precipitation. Methylation in offshore marine sites correlated with sulfate reduction but not the partitioning of Hg between pore water and solid phases. The decrease in sulfide production offshore exacerbated Hg methylation.

Conclusions

The freshwater to marine gradient in the Idrija/So?a/Isonzo/Adriatic region is dynamic, exhibiting horizontally variable rates of microbial activities and Hg transformations that create “hot spots” of MeHg accumulation that are controlled differently in each region.

     

Kinetics of the desorption of mercury from selected freshwater sediments as influenced by chloride

The kinetics of Hg desorption from selected freshwater sediments in the Canadian Prairies as influenced by a range of chloride concentrations (0, 10⁻⁴, 10⁻³, 10⁻², 2×10⁻², 4×10⁻², 6×10⁻², 8×10⁻², 10⁻¹ M) were studied. The extent of the influence of Cl⁻ concentrations on the increase of the rate of Hg release from the sediments in the fast desorption and slow desorption processes varied from 2.5 to 10.5 times and 2.0 to 8.5 times, respectively. An abrupt increase in the Hg release from the sediments was observed when the Cl⁻ concentration was 2×10⁻² M and higher. The increase of Hg release with increasing Cl⁻ concentrations was attributed to the dissolution of the adsorbed Hg through its complexation with Cl⁻. The release of Hg was not affected by the ionic strength and the Na concentrations in the systems studied. The influence of Cl- concentrations on the kinetics of the release of the sediment-bound Hg varied with the nature and properties of the sediments. The data indicate that short-range ordered oxides of Al, Fe, and Mn and their complexes with organic components merit close attention in studying the influence of Cl⁻, whose sources include deicing salts, fertilizers, animal wastes, and sewage effluents, on the rate of the dispersion of Hg from freshwater sediments.     

Nematode community populations in the rhizosphere of cultivated olive differs according to the plant genotype

Classical and molecular methods were used to study the nematode communities associated with rhizosphere soil and roots of a collection of 16 olive cultivars from a world olive germplasm bank in Mengibar (Jaen province, southern Spain). Classical nematological analysis, including soil nematode extraction, species counting and morphological identification showed that 24 taxa belonging to 9 genera (including Aphelenchoides, Criconemoides, Ditylenchus, Filenchus, Helicotylenchus, Merlinius, Paratylenchus, Tylenchus, and Xiphinema) and 8 families (including Anguinidae, Aphelenchidae, Belonolaimidae, Criconematidae, Hoplolaimidae, Longidoridae, Tylenchidae and Tylenchulidae) of plant-parasitic nematodes were present, with one species (Helicotylenchus digonicus) being prevalent in all samples. The low values of the plant-parasitic nematode index (PPI) indicated a high disturbance of the field soil probably due to application of herbicides and fertilizers. Cluster analysis of population densities of the various nematode species, nematode trophic groups, and ecological indices grouped most olive cultivars into three main clusters indicating that olive genotypes differ in the nematode communities in their rhizosphere soil. The use of T-RFLP analysis discriminated to a higher extent the nematode communities present in the rhizosphere soil from the different olive cultivars as compared to the morphological-based analysis. This study provides the first evidence of an effect of the olive genotype on nematode community composition by combining classical morphological and molecular approaches.     

Bacterial diversity in the rhizosphere of two phylogenetically closely related plant species across environmental gradients

Purpose

Rhizosphere soil bacterial communities are crucial to plant growth, health, and stress resistance. In order to detect how bacterial communities associated with the rhizosphere of phylogenetically related plant species vary in terms of composition, function, and diversity, we investigated the rhizosphere bacterial community structure of two perennial shrub species, Caragana jubata and Caragana roborovskyi, under natural field conditions in northwest China and analyzed the influence of soil properties and environmental factors.

Materials and methods

Eighteen root samples, eight for C. jubata, and ten for C. roborovskyi, along with any adherent soil particles, were collected from multiple sites in northwest China. The rhizosphere soil was washed from the roots, and bacterial communities were analyzed using Illumina MiSeq sequencing of 16S rRNA gene amplicons. Then, α-diversity and β-diversity were calculated using QIIME.

Results and discussion

Across species, Proteobacteria (29 %), Actinobacteria (15 %), Chloroflexi (10 %), Acidobacteria (10 %), Bacteroidetes (8 %), Firmicutes (8 %), Planctomycetes (7 %), Gemmatimonadetes (4 %), and Verrucomicrobia (3 %) were the most abundant phyla in the rhizosphere of C. jubata and C. roborovskyi. However, principal co-ordinates analysis indicated strong interspecific patterns of bacterial rhizosphere communities. Further, the richness of Proteobacteria, Acidobacteria, Bacteroidetes, Verrucomicrobia, Firmicutes, and Nitrospirae was significantly higher in the rhizosphere of C. jubata compared with C. roborovskyi, while the opposite was found for Actinobacteria and Cyanobacteria. However, the Shannon index showed no significant difference in α-diversity between C. jubata and C. roborovskyi. Distance-based redundancy analysis indicated that soil properties and environmental factors exerted strong influences on the structure of the rhizosphere bacterial community and explained 47 and 46 % of community variances between samples, respectively.

Conclusions

Our results showed strong interspecific clustering of the bacterial rhizosphere communities of C. roborovskyi and C. jubata. Altitude explained most of the variation in the composition of bacterial rhizosphere communities of C. roborovskyi and C. jubata, followed by soil pH, water content, organic matter content, total nitrogen content, and mean annual rainfall.

     

Sequential solidification/stabilization and thermal process under vacuum for the treatment of mercury in sediments

Purpose  

Millions of cubic meters of sediments are dredged every year in the world. About 10–20% on weight basis of this material is contaminated by organic and/or inorganic pollutants. This work presents the laboratory tests performed to study a system for the remediation and reuse of mercury-contaminated sediments. The treatment is based on a cement-based granulation step (solidification/stabilization (S/S)), followed by a thermal process under vacuum during which volatile and semi-volatile compounds are removed. The experiments focused on: (1) cement hydration reactions; (2) pollutant removal efficiencies; and (3) leaching behavior, in relation to temperature and duration of the thermal process. Mercury speciation was also investigated.     

Effects of silver nanoparticles on soil microorganisms and maize biomass are linked in the rhizosphere

Silver nanoparticles hold great promise as effective anti-microbial compounds in a myriad of applications but may also pose a threat to non-target bacteria and fungi in the environment. Because microorganisms are involved in extensive interactions with many other organisms, these partner species are also prone to indirect negative effects from silver nanoparticles.Here, we focus on the effects of nanosilver exposure in the rhizosphere. Specifically, we evaluate the effect of 100 mg kg⁻¹ silver nanoparticles on maize plants, as well as on the bacteria and fungi in the plant's rhizosphere and the surrounding bulk soil. Maize biomass measurements, microbial community fingerprints, an indicator of microbial enzymatic activity, and carbon use diversity profiles are used. Hereby, it is shown that 100 mg kg⁻¹ silver nanoparticles in soil increases maize biomass, and that this effect coincides with significant alterations of the bacterial communities in the rhizosphere. The bacterial community in nanosilver exposed rhizosphere shows less enzymatic activity and significantly altered carbon use and community composition profiles. Fungal communities are less affected by silver nanoparticles, as their composition is only slightly modified by nanosilver exposure. In addition, the microbial changes noted in the rhizosphere were significantly different from those noted in the bulk soil, indicated by different nanosilver-induced alterations of carbon use and community composition profiles in bulk and rhizosphere soil.Overall, microorganisms in the rhizosphere seem to play an important role when evaluating the fate and effects of silver nanoparticle exposure in soil, and not only is the nanosilver response different for bacteria and fungi, but also for bulk and rhizosphere soil. Consequently, assessment of microbial populations should be considered an essential parameter when investigating the impacts of nanoparticle exposure.     

Reduction of mercury pollution in the vicinity of a caustic soda plant in Thailand

Fish samples collected near the caustic soda factory of TACSCO in Thailand during November and December 1978 were found to contain 0.10 to 1.38 ppm Hg in flesh (on wet weight basis), whereas those of the control areas contained 0.01 to 0.30 ppm. The Hg content of the fish in the TACSCO area had decreased by more than half from the first investigation which took place during 1975–76. This decrease is obviously a result of the functioning of the waste-water-treatment system built by the factory in 1974. The bottom mud collected near the factory in 1978 contained 8.39 to 57.95 ppm Hg (on dry weight basis) as compared with the mean of 0.03 ppm in samples taken from the control area. The Hg content in fish-eating birds were low, 0.04 to 0.44 ppm in the muscles and 0.05 to 1.32 ppm in the livers (on wet weight basis).     

Effects of biochar addition to estuarine sediments

Purpose

Biochar is a carbon-rich product, able to enhance soil fertility and mitigate CO₂ emissions. While biochar effects on agriculture are becoming known, its impact elsewhere, e.g., on estuarine ecosystems, has yet to be assessed. The main aim of the present study was to determine the effect of biochar on sediment–water retention, CO₂ emissions from sedimentary organic carbon decomposition, sediment pH and electrical conductivity, in aerobic conditions similar to those observed at low tide.

Materials and methods

Sediments from the Mondego Estuary (Portugal) were mixed with pine gasification biochar at different doses (5, 10, 14 %) and immersed in water with different salinity values (15, 25, 30) for 96 h. The influence of biochar on water retention, the residence time of water and CO₂ emissions between ?0.75 and ?1.5 MPa, total organic carbon, pH and electrical conductivity (EC) were determined. Carbon chemical composition and polycyclic aromatic hydrocarbon (PAH) concentrations were determined in sediments and biochar. Differences between biochar treatments after immersion in different water salinities were analysed using the Kruskal–Wallis test.

Results and discussion

Results showed that biochar was able to (a) increase sediment–water content in terms of quantity and residence time, (b) decrease CO₂ emissions, but only with a specific soil–water content and at the highest biochar dose, (c) increase sediment pH at all biochar doses and (d) increase sediment EC at the highest biochar dose. In contrast, the percentage of carbon mineralised was not modified. Biochar carbon was rich in PAHs and less decomposable than sedimentary carbon. The increments observed in sediment pH and EC were unable to change sediment alkaline or saline status according to standard classifications.

Conclusions

Our results suggest that the remarkable water adsorption capacity of biochar–sediment mixtures may be considered the main factor in regulating CO₂ emission rates from sediments, together with high PAH concentrations, which probably restrain the organic matter decomposition process.