Genetic variation of avirulence genes (AVR-Pi9, AVR-Pik,AVR-Pita1) and genetic diversity of rice blast fungus,Pyricularia oryzae,in Thailand

Genetic variation of the rice blast (Pyricularia oryzae) population in Thailand was investigated based on the nucleotide sequence of three avirulence genes, AVR-Pi9, AVR-Pik, and AVR-Pita1. Sixty rice blast isolates were collected from rice-growing areas around Thailand. Gene-specific primers were used to amplify these AVR genes and AVR-Pi9, AVR-Pik, and AVR-Pita1 were detected in 60, 57, and 23 isolates, respectively. Based on the AVR-Pi9 sequences, we identified one rice blast isolate containing an amino acid change from glutamic acid to aspartic acid. Moreover, two rice blast isolates had identical sequences to the rice blast strain originating in Japan, indicating a potential movement of this isolate from Japan to Thailand. Three AVR-Pik alleles were found, including AVR-PikA (3.51%), AVR-PikD (71.93%), and isolates with two copies of AVR-PikD and AVR-PikF (24.56%). AVR-PikA and AVR-PikF are virulent to Thai rice variety Jao Hom Nin. Six haplotypes of AVR-Pita1 were identified with one deletion and 12 amino acid substitutions. This study revealed that different AVR genes in Thai rice blast populations have different levels of genetic variation: AVR-Pi9 and AVR-Pik genes have a relatively low genetic diversity, while the AVR-Pita1 gene has high genetic diversity. We found AVR-Pi9 was not under selection pressure, while AVR-Pita1 was under purifying selection pressure. In addition, geographic location has influenced the distribution of genetic variation of AVR-Pita1. The information obtained from this study is valuable for the future development of breeding strategies for rice blast resistance in Thailand.     

水稻恢复系华占抗稻瘟病遗传分析及基因鉴定

 华占是近年来我国新选育的恢复系,广泛应用于杂交稻育种中,其配组的杂交稻组合对稻瘟病均表现出良好的抗性。本研究利用来源于华南稻区的62个稻瘟病菌株对恢复系华占、明恢63和广恢998进行抗病性鉴定,结果表明:华占对接种菌株的抗谱达到95.2%,对稻瘟病表现出广谱抗性。为进一步了解该恢复系所含的抗稻瘟病基因,以高感稻瘟病品种丽江新团黑谷为母本,以华占为父本,构建了丽江新团黑谷(LTH)/华占的F₂抗病遗传分析群体。利用对华南水稻品种具有致病谱较广的稻瘟病代表菌株GD00-193a对随机选择的1 000个来源于LTH/华占的F₂个体及其F₁个体进行抗病遗传分析,结果发现F₁个体表型全为抗病,1 000个F₂个体的抗/感比率符合3∶1的显性单基因分离比,说明华占至少含有一个显性抗稻瘟病基因。利用均匀分布于水稻12条染色体的250对SSR引物,通过分离群体分析结合隐性群体分析法将华占的一个抗稻瘟病基因定位于水稻第6染色体的Pi2/Pi9/Pi50区域。通过Pi2等位基因的测序分析,结果表明华占含有Pi2抗病基因。本试验结果为华占在杂交稻上的应用及其配组组合的品种布局提供重要依据。     

侵染优质稻美香占2号的稻瘟病菌生理小种鉴定及无毒基因分析

为明确优质稻种美香占2号的抗瘟性,并为其合理布局以及与不同品种的轮换种植提供科学依据,利用7个中国鉴别品种和11个抗稻瘟病单基因系,对2013—2017年自广东省美香占2号品种上分离获得的50株稻瘟病菌Magnaporthe oryzae菌株进行生理小种鉴定和无毒基因型分析。结果显示,50株稻瘟病菌菌株被鉴定为11个生理小种,其中优势小种分别为C13、B13、B01、B05和C05;50株稻瘟病菌菌株对IRBLkh-K3(仅含Pik-h基因)、NIL-e1(仅含Pi50基因)、IRBL9-W(仅含Pi9基因)和IRBLzt-T(仅含Piz-t基因)4个抗稻瘟病单基因系表现出极低的毒性,频率分别为4%、6%、6%和8%;对IRBLz-Fu(仅含Piz基因)、IRBLkp-K60(仅含Pik-p基因)和IRBLi-F5(仅含Pii基因)3个抗稻瘟病单基因系表现出相对较高的毒性,频率分别为88%、86%和80%;自美香占2号以及其它4个主栽品种上获得的70株稻瘟病菌菌株被聚为不同类群;2003—2007年供试菌株中无毒基因AvrPi9、AvrPiz-t、AvrPi50和AvrPik-h的出现...     

一个新的与稻瘟病菌无毒基因AVR-Pikm紧密连锁的SCAR标记

 无毒基因是病原物中决定寄主抗病性表达的功能基因,其功能的丧失导致毒性小种的产生。本研究利用随机引物扩增DNA多态性技术,从稻瘟病菌菌株S1522中新筛选到1个与无毒基因AVR-Pik^m紧密连锁的DNA标记OPE12₁₄₀₀。根据OPE12₁₄₀₀的核苷酸序列,设计了1对含有17个核苷酸的特异性SCAR引物,并利用该引物对无毒表型亲本S1522和毒性表型亲本S159及其有性杂交后代的108个菌株进行了PCR扩增。结果表明:所有无毒表型的菌株均能特异性扩增出1条与OPE12₁₄₀₀大小相近的DNA片段,而毒性表型的菌株除2个重组体外,均不能扩增出此片段。根据计算,这一SCAR标记与目标无毒基因AVR-Pik^m之间的遗传距离为1.89 cM,与本研究小组先前报道的另一个标记OPO12₁₀₀₀位于目标基因的同一侧,但与OPO12₁₀₀₀相比,距目标基因近了2.86 cM。本标记的获得将有助于确定AVR-Pik^m在染色体上的位置,有助于确定用于进一步筛选位于相反一侧的连锁标记的重叠群区域。     

空间诱变品系稻瘟病抗性变异及分子标记研究

 本文在前期苗叶瘟抗谱测定的基础上,通过对空间诱变粤香占和青华占高代品系(6代以上)病圃田间穗颈瘟的鉴定,表明苗期表现抗稻瘟病的品种多数在成熟期同样表现抗或高抗稻瘟病。SSR多态性分析表明粤香占和青华占突变品系与原种间存在1.6%~17.4%和7.2%~10.4%的多态性频率,并存在3种多态性表现形式:(1)扩增片段数增加,(2)扩增片段数减少,(3)扩增片段大小有差异。说明由空间环境诱导的DNA变异可能并非是单纯的点突变。进一步分析诱变品系的多态性频率与抗病性的关系,发现部分诱变品系的抗性随着多态性频率的增加而提高。     

一个与稻瘟病菌无毒基因AVR-Pik~m连锁的SCAR标记的分离

 本研究将以前在稻瘟病菌菌株S1522获得的与决定对水稻品种梅雨明无毒性的基因(AVR-Pik^m)相连锁的1个RAPD标记OPO12₁₀₀₀进行了克隆和鉴定。核苷酸序列测定与分析结果表明:OPO12₁₀₀₀的大小为946个碱基,不含有与已报道的稻瘟病菌Mg-SINE、Fosburry、Magyy、Grasshopper、Pot2以及Pot3等同源的重复序列。根据OPO12₁₀₀₀的核苷酸序列,设计了1对24个核苷酸的特异引物,对无毒表型亲本S1522和毒性表型亲本S159、无毒表型群体基因池、毒性表型基因池以及有性杂交后代108个菌株进行了PCR扩增,所有无毒表型的菌株均能特异性地扩增出1条与OPO12₁₀₀₀大小相同的DNA条带,而毒性表型的菌株除5个重组个体外,均不能扩增出这条特异带。此结果表明,与稻瘟病菌无毒基因AVR-Pik^m连锁的RAPD标记OPO12₁₀₀₀被成功地转化为SCAR标记,为进一步通过染色体步移克隆该无毒基因奠定了基础。     

粳籼89穗颈瘟分离菌株的致病力及遗传宗谱研究

通过对粳籼89的穗颈瘟分离菌株的致病力及遗传宗谱研究,结果表明:(1)粳籼89分离菌株的小种类型复杂,既有籼型小种如ZA1、ZB1、ZB5、ZB13、ZC13等,又有粳型小种如ZD5、ZG1等;(2)该类菌株的致病力存在不稳定性,同一菌株不同时间接种,鉴别寄主上表现的小种类型不同,对其他主栽水稻品种或抗源的致病力也表现不同,但这些菌株无论何时接种到粳籼89上均能使其表现感病,病级在4级以上;(3)该类菌株接种到粳籼89衍生品种或其他粳籼杂交后代上,一般能侵染这类品种;(4)利用RFLP技术,采用探针MGR586与限制性内切酶EcoRI组合对病菌进行DAN指纹分析,结果16个粳籼89分离菌株被分在2个相邻的遗传宗谱里,即宗谱1(9个菌株)和宗谱2(7个菌株),这两个宗谱恰好是广东的优势宗谱。     

吉林省主栽水稻品种抗瘟性评价及抗瘟基因型鉴定

 为明确吉林省主栽水稻品种的抗瘟性和抗瘟基因型,选用了一套已明确其无毒基因组成的稻瘟病菌标准菌株对吉林省68个主栽水稻品种进行喷雾和离体划伤接种试验。结果表明,68个品种的抗瘟能力存在较大差异,中抗以上抗病品种达到44个,占供试品种的64.7％;抗瘟基因推导结果结合特异性分子标记检测表明,Pita、Pia、Pish、Pita2、Pib和Pi9等6个基因为吉林省主栽水稻品种中主要的抗瘟基因,并且品种中含有的抗瘟基因数量与抗瘟能力呈正相关;根据结果推测,测试的所有品种中可能不含有Pi2、Pikh、Pikm、Pi11和Pi12基因。本研究揭示了吉林省近年主栽水稻品种的抗瘟能力和抗瘟基因组成,明确了吉林稻区主效抗瘟基因和基因聚合对稻瘟病的抗性贡献,为进一步培育广谱持久抗瘟品种和合理布局抗病品种提供了重要参考。     

水稻品种抗瘟遗传多样性分析及其应用

以水稻的Xa21基因中富含亮氨酸重复区域（leucine-rich repeat regions）设计的XLRR for（CCGTTGGACAGGAAGGAG）与XLRR rev（CCCATAGACCGGACTGTT）为引物,通过PCR扩增、聚丙烯酰胺凝胶电泳和银染检测,进行了江西省水稻主栽品种和地方资源品种的抗病基因类似序列（resistance gene analogue,RGA）分析.结果表明,水稻抗病基因类似序列类型丰富,供试的23个品种的RGA-PCR指纹聚类后,当以欧氏距离4.5划分时,可分为6个遗传相似组.同一遗传相似组内的品种,在品种的特性上,有较强的相似性,如第二组,由两个品种大禾谷和长粒糯组成,它们均为高秆的地方优质老品种,生产上均较感稻瘟病.烂蔸糯和流稻糯两个糯稻品种,属同一遗传相似组.当以欧氏距离5.0划分时,可分为2个遗传相似组,其中一组包括圆粒糯、大禾谷、长粒糯等江西三个地方老品种和巴西陆稻.主栽品种汕优63、两优培九等与烂蔸糯、圆粒糯等优质地方老品种,遗传距离较远.田间试验表明,遗传背景差异较大的品种混合间栽,对稻瘟病平均防效达91.98%～95.68%.     

Gene-for-gene relationships between rice and diverse avrBs3/pthA avirulence genes in Xanthomonas oryzae pv. oryzae

The interactions between Xanthomonas oryzae pv. oryzae (Xoo) and rice are controlled in a gene-for-gene manner. In this study, a 359 bp DNA fragment of the avrXa3 gene containing three nuclear localization signal (NLS) motifs present in all members of the avrBs3/pthA family was used as a probe to screen a genomic library of the JXOIII strain of Xoo. The results demonstrated that diverse members of the family exist in the pathogen genome. The avrBs3/pthA genes occurred at isolated individual portions or in clusters. The positive avr gene clones were transferred into the virulent recipient PXO99^A. Pathogenicity tests in near isogenic lines of rice confirmed that four resistance (R) genes ( Xa2 , Xa3 , xa5 and xa8 ) matched the four avr genes ( avrXa2 , avrXa3 , avrxa5 and avrxa8 ) in the genome of Xoo strain JXOIII. The avrBs3/PthA -like gene (1·7 kb) present in cosmid p54, may specifically interact with the Xa3 gene present in IRBB3, and is designated avr/pthA3 . Sequencing indicated that there are only 1·5 copies of the 102 bp repeat unit in avr/pthA3 . Alignment of the twelfth and thirteenth amino acids in the repetitive units encoded by this gene with those in other representatives of the AvrBs3 family revealed a unique repeat arrangement which might contribute to variation in the avirulence genes in Xoo. The parental rice line IR24 was found to contain several R genes for resistance to Xoo bacterial blight.     

251份水稻品种(系)对稻瘟病的抗性鉴定及抗性多样性分析

 采用稻瘟病菌22个鉴别菌株对251份水稻品种（系）进行了抗病性测定,并进行了聚类分析和基因型推导。抗病性测定结果表明,251份品种（系）对鉴别菌株表现出的抗谱类型存在明显的多样性。根据供试品种（系）对鉴别菌株的抗感反应型,可将其划分为12个组,各组的品种（系）对鉴别菌株的反应型和抗性频率存在明显差异。基因型推导结果表明,在251份品种（系）中,70份品种涉及14个抗瘟基因,181份品种（系）不含有待测基因中的任何一个,但都含有其他抗瘟基因。聚类分析结果与基因型推导结果不存在简单的一一对应关系。珍科等10份品种（系）可作为田间抗瘟性筛选的候选材料。     

稻瘟病抗性分子机制及抗病育种策略研究进展

由稻瘟菌侵染引起的稻瘟病是威胁水稻安全生产最严重的真菌病害之一。鉴定克隆水稻抗稻瘟病基因, 系统深入研究稻瘟菌与水稻的相互作用, 揭示水稻的抗病机制, 进而创制推广抗稻瘟病新材料, 对确保粮食安全具有重要意义。本文总结了近10年来稻瘟病抗病基因和感病基因的鉴定、分子机理解析和应用等进展, 总结归纳了抗病基因聚合、分子设计育种、感病基因编辑、抗病基因的病原诱导表达等抗病育种主要策略。最后提出充分利用种质资源, 利用新技术挖掘新基因及创制新材料, 深入研究叶瘟和穗瘟抗病机制差异等是稻瘟病抗病育种下一步重点研究方向和新挑战。     

浙江省水稻新品种(系)对稻瘟病的抗性研究

用4个稻瘟病菌小种对浙江省280份水稻新品种(系)进行稻瘟病抗性分析,结果表明:浙江省水稻新品种(系)对稻瘟病菌具有较好的抗性,籼稻和粳稻对参试菌株的全抗率分别为21.62%和39.05%,说明粳稻具有较籼稻更广的抗谱;浙江省新品种(系)对ZB13小种具有较高的感病率,籼稻和粳稻的感病率分别为69.37%和52.07%。     

基于毒性相关基因序列的稻瘟病菌群体遗传多样性分析

 选用16对毒性相关基因特异性引物对四川和重庆9个县(市)分离到的200个稻瘟病菌单孢菌株进行PCR扩增,并采用最长距离法进行聚类分析,结果显示各引物均能扩增出其目的条带,多态位点百分率(P)高达93.75%,扩增频率差异较大;200个菌株可归为70个不同的单元型,其中单元型SCH13为优势单元型;在0.86遗传相似水平上,200个菌株可划分为27个遗传宗谱,包括1个优势宗谱,3个亚优势宗谱,14个次要宗谱,9个小宗谱,层次丰富;在群体平均水平上,病菌群体具有丰富的遗传多样性(H=0.324 4,I=0.484 2),且群体间差异较大;9个种群在遗传距离为0.05水平上可分为4个类群,种群遗传谱系与地理区域分布呈一定相关性。同时,该地区的群体存在一定的遗传分化(HT=0.320 0),群体内多样性大于群体间多样性(Hs=0.179 6,Dst=0.140 4),总遗传变异的56.13%存在于群体内(Gst=0.438 7),群体间基因流动性较小(Nm=0.639 6)。本研究揭示了四川和重庆部分区域稻瘟病菌群体遗传结构、遗传多样性及其与地理分布之间的关系,为抗病育种和品种布局奠定了基础。     

杂交稻对稻瘟病和稻白叶枯病的抗性鉴定

对广东省将推广的54份杂交稻组合对稻瘟病和白叶枯病的抗病性进行了鉴定。对稻瘟病的抗病性鉴定表明:抗病组合共49个,占90.7%;其中,高抗(抗性比≥91%)组合30个,占55.6%。对稻白叶枯病的抗病性鉴定表明:没有高抗(HR)和抗(R)的组合,仅有一个杂交稻组合(西胜2175)表现为中抗(mR),仅占1.9%,其余53个组合都表现感病,占98.1%。进一步分析表明:对稻瘟病表现高抗的30个杂交稻组合都不抗白叶枯病,而中抗白叶枯病的杂交稻组合西胜2175对稻瘟病表现为中抗,抗性比为74%。     

Identification of avirulence genes in the rice blast fungus corresponding to three resistance genes in Japanese differentials

The pathogenicity of progeny from crosses among three Chinese isolates of Magnaporthe grisea collected from rice was tested on three Japanese differentials (Ishikarishiroke, Aichiasahi, K 59) having the blast resistance genes Pii, Pia, and Pit, respectively. Monogenic control was demonstrated for avirulence to the differentials. To identify resistance genes corresponding to the avirulence genes, the resistance and susceptibility in F₃ lines of the cultivars in response to the parents of the crosses were analyzed genetically. The three avirulence genes identified, designated Avr-Pii, Avr-Pia, and Avr-Pit, appear to correspond to resistance genes Pii, Pia, and Pit, respectively. The monogenic control of avirulence in the fungus and monogenic dominant resistance in rice cultivars supports a gene-for-gene relation in the Pii-, Pia-, or Pit-dependent resistance to the rice blast fungus in rice cultivars.     

云南省元阳县籼/粳型稻瘟病菌无毒基因Avr-Pia、Avr-Pita1和Avr-Pii多样性分析

为明确云南省元阳县籼/粳型稻瘟病菌中无毒基因的多样性及差异,采用接种鉴别品种方法和PCR技术对9株粳型菌株和21株籼型菌株中无毒基因Avr-Pia、Avr-Pita1和Avr-Pii的多样性进行分析。结果显示,30株稻瘟病菌菌株中无毒基因Avr-Pia、Avr-Pita1和Avr-Pii的平均出现频率分别为33.3%、76.7%和0,Avr-Pia、Avr-Pita1在籼型菌株和粳型菌株中的出现频率分别为4.8%和100.0%、66.7%和100.0%。Avr-Pia主要为存在/缺失的多样性,籼/粳型菌株对水稻品种Achiasahi(Pia)的致病率分别为100.0%和11.1%;Avr-Pita1可划分为3个类群,除菌株CH1195属于PO类群外,籼型菌株均属于J1类群,粳型菌株则属于J2/J3类群;籼/粳型菌株对水稻品种K1(Pita)的致病率分别为100.0%和0,且籼/粳型菌株Avr-Pita1蛋白序列在第83位和第192位氨基酸差异明显。Avr-Pii在30株稻瘟病菌菌株中均未检出,籼/粳型菌株对水稻品种Fujisaka No. 5(Pii)的致病率分别为100.0%和0。表明Avr-Pia和Avr-Pita1在粳型菌株中的出现频率高于籼型菌株且变异程度低,粳型菌株中可能存在其它无毒基因使其不能侵染Fujisaka No. 5。     

航天诱变水稻对叶瘟和穗瘟的抗性鉴定

采用蒙古稻旱晚播活体菌株接种法 ,对JB-1号返回式卫星搭载回的 12个稳定的水稻突变体作了稻瘟病抗性鉴定 ,结果明确 ,航天诱变水稻材料 971-5、974 -4、974-5均抗叶瘟和穗瘟。     

黑龙江省水稻新品种（系）抗稻瘟病性鉴定及利用

1998-2009年采用稻瘟病人工接种和自然感病鉴定2种方法,共鉴定黑龙江省水稻新品种（系）485份（次）,鉴定出抗稻瘟病新品种（系）109份,12年间先后推广了‘空育131’、‘绥粳3号’、‘龙粳12’、‘龙粳14’、‘垦稻12’等49个新品种,推广了3个超级稻品种‘龙粳14’、‘龙粳18’、‘龙粳21’,18个新品种年种植面积超过6.67万hm2,获得了较高的经济效益和社会效益。     

A new blast resistance gene identified in the Indian native rice cultivar Aus373 through allelism and linkage tests

Blast, caused by Pyricularia grisea , is a major constraint on rice production. To widen genetic diversity for disease resistance, the Indian native rice cultivar Aus373 was screened by F₂ segregation analyses to investigate the genetic basis of its high resistance. Aus373 was crossed with a series of Japanese differential cultivars (JDCs) and the Chinese susceptible cultivar Lijiangxintuanheigu (LTH). The resistance ratios of subsequent F₂ progenies were used to determine the number of blast-resistance loci present as well as allelic relationships with known loci. Resistance of Aus373 was governed by dominant alleles at two loci, one at the Pi-k locus and the second apparently at a new locus linked to an isozyme gene Amp-1 with a recombination fraction of 37.9 ± 3.0% on chromosome 2. This putative new locus and allele were designated Pi16 (t).