Identification and pathogenicity of Botryosphaeriaceae species associated with root and stem rot of sweet potato in Brazil

The sweet potato (Ipomoea batatas) is characterized by the production of tuberous roots rich in starch and is one of the most produced and consumed vegetables in Brazil. Botryosphaeriaceae, among other fungi, are known to cause root and stem rot of sweet potato. However, no representative and accurate study has been performed for the correct identification of these fungal species in sweet potato in Brazil. Therefore, this study aimed to identify the Botryosphaeriaceae species associated with root and stem rot of sweet potato and confirm their pathogenicity. Tuberous roots and stems of sweet potato with rot symptoms were collected in production fields and markets and used for fungal isolations. The identification of fungi was based on the morphology of reproductive structures and phylogenetic analyses of the gene regions ITS, tef1-α, and rpb2. The following species were identified: Lasiodiplodia theobromae, L. hormozganensis, Macrophomina phaseolina, M. euphorbiicola, M. pseudophaseolina, and Neoscytalidium dimidiatum. For the pathogenicity test, one representative isolate for each species was inoculated in healthy tuberous roots and in 30-day-old healthy seedlings. Black and necrotic lesions on tuberous roots and stems were observed in all replications and resulted in the death of some seedlings. This is the first report of L. hormozganensis, M. pseudophaseolina, and M. euphorbiicola, as causal agents of the stem and root rot of sweet potato and N. dimidiatum as a causal agent of stem rot worldwide.     

Fusarium rot of melon is caused by several Fusarium species

Fusarium rot of melon, caused by species of the genus Fusarium, has become an important postharvest disease for many Brazilian producers. Due to the delayed onset of symptoms, this disease is often only detected when fruits arrive at the importing country, thus generating economic loss for the exportation of the fruit. This study was developed with the aim of investigating which Fusarium species cause fruit rot in melon and to evaluate any differences in aggressiveness and development of symptoms. Species were identified through phylogenetic analysis of two loci and morphological markers. The 28 isolates obtained from diseased melon fruits of different commercial cultivars were identified as Fusarium falciforme (FSSC), F. sulawesiense, F. pernambucanum (FIESC), and F. kalimantanense (FOSC). Three isolates belong to a new phylogenetic lineage within the F. fujikuroi species complex (FFSC). All isolates were tested for pathogenicity, and first symptoms of rot in Canary melon were observed 2 days after inoculation. Isolates of F. falciforme and F. sulawesiense were shown to be more aggressive. Our results extend information on Fusarium species that cause fruit rot in melon and support the development of management strategies, as there is currently no efficient control for this disease. To our knowledge, this is the first report of the occurrence of species of the FSSC, FOSC, and FFSC from muskmelon fruits in Brazil.     

Molecular identification and pathogenicity of Fusarium and Alternaria species associated with root rot disease of wolfberry in Gansu and Ningxia provinces,China

Wolfberry (Lycium barbarum) ranks in the top 10 best-selling medicinal plants in China and it has been used for centuries as a medicine and a food supplement. It is suggested to have benefits on human health due to the rich content of polysaccharides, carotenoids, flavonoids, and alkaloids contained in its fruits, leaves, and root bark. Recently, severe root rot diseases have been causing plant losses in major growing areas. Here, we report fungi causing root rot disease in Chinese wolfberry plants. The analysis of nucleotide sequences of the internal transcribed spacer (ITS) region revealed a total of 92 isolates isolated from both soil and plant material samples. Fusarium spp. were the most abundant (58%), followed by Penicillium spp. (9%), and Alternaria spp. (5%). Fusarium spp. included F. oxysporum (36%), F. solani (30%), F. chlamydosporum (9%), F. nematophilum (9%), and F. tricinctum (8%). Sequences from the translation elongation factor 1-α gene (TEF-1α) were used to confirm the identity of Fusarium spp. and showed the predominance of F. oxysporum and F. solani. To confirm the pathogenicity of isolates, four isolates belonging to Fusarium spp. and one isolate belonging to Alternaria spp., isolated from wolfberry root tissues with root rot symptoms, were tested in outdoor and laboratory conditions. Results revealed that the five tested isolates were pathogenic with varying degrees of aggressiveness and ability to induce symptoms of root rot in wolfberry seedlings. The five isolates were recovered from inoculated seedlings, completing Koch's postulates. This is the first report on causative agents of root rot in Chinese wolfberry.     

In vitro and in vivo toxicity of nano chitosan against Curvularia lunata,the causal microorganism of fruit rot and blight,a new disease of olive (O. europaea L.)

During 2019, fruit blight and rot symptoms were observed on olive (O. europaea L.) fruits on trees grown in the Experimental Farm, Faculty of Agriculture, Sohag University, Egypt. Fungal isolates recovered from symptomatic fruits were identified as Curvularia lunata (Walker) Boedijn (two isolates) and A. alternata (Fr.) Keissl. (one isolate). Koch’s postulates were fulfilled by a pathogenicity test conducted in vitro on olive fruits wounded before inoculation with fungal isolates and incubation at 25?±?0.2 °C in a moist chamber for a week. During incubation, we observed the development of blight and rot symptoms on fruits inoculated with both isolates of C. lunata, similar to the natural symptoms described. Conversely, A. alternata was nonpathogenic to olive fruits. PCR amplification using the specific P1 and P2 primers to C. lunata based on the Clg2p Ras protein gene sequences resulted in approx. 870 base pairs for all DNA of C. lunata analyzed, confirming the identification of C. lunata. In vitro, both chitosan nano and non-nano scale effectively inhibited mycelial growth by reducing linear mycelium and biomass and sporulation of C. lunata. In vivo, chitosan nanoscale at 2.0 mg mL^?1 greatly reduced the infection and the lesion diameter of C. lunata inoculated fruits after a week and effectively induced defense-related enzyme activity of PO, PPO, and PAL. This report is the first recording of fruit blight and rots on olive caused by C. lunata, as a new disease. Also, we report the in vitro and vivo toxicity of nanoparticles of chitosan as a natural elicitor, effectively inducing defense-related enzymes against C. lunata.

     

广西百香果采后果腐病病原的鉴定

0 引言 百香果(Passiflora edulis),学名西番莲,为西番莲科(Passifloraceae)西番莲属(Passiflora Linn.)草质藤本植物,原产于南美洲的巴西,在我国主要种植于热带、亚热带地区,具有极高的营养、保健和商品价值[1-2].目前,我国百香果的主栽品种为紫果百香果(Passiflo...     

Identification,pathogenicity and community dynamics of fungi and oomycetes associated with pea root rot in northern France

The pea root rot complex is a major concern for green pea production worldwide. This study aimed at characterizing its composition and dynamics throughout a cropping season in northern France. To this end, fungi and oomycetes were isolated from green pea plant roots with symptoms sampled at the flowering stage in 22 fields in 2017, and at the pea emergence, elongation and flowering stages in two fields in 2018. Out of 646 isolates collected, 317 were identified using molecular markers. Fusarium oxysporum, F. solani and F. redolens were highly predominant. Pathogenicity tests separated the isolates into four aggressiveness groups. F. solani isolates were the most aggressive. Phylogenetic analysis of their TEF1 sequences showed that they mainly belonged to the F. pisi lineage, and that F. oxysporum isolates were genetically close to isolates from the UK that did not belong to the forma specialis pisi. In addition, several Clonostachys rhizophaga isolates are reported for the first time to cause pea root rot. The oomycetes were rarely found and were represented by a few Pythium spp. isolates. Lastly, this study shows that the fungal and oomycete communities associated with pea root rot change during the cropping season. The level of dissimilarity of the root-rot-associated communities decreased throughout the cropping season towards a more similar composition at the flowering stage, dominated by F. solani, F. oxysporum and F. redolens. The proportion of nonpathogenic to weakly pathogenic isolates decreased progressively during the growing season in favour of moderately to highly pathogenic isolates.     

Temporal development and relationship amongst brown rot blossom blight,fruit blight and fruit rot in integrated and organic sour cherry orchards

The aim of this 4‐year study was to characterize temporal development of brown rot blossom blight and fruit blight (caused by Monilinia spp.) and their sporulating areas in sour cherry orchards; and to determine the relationships amongst incidence and sporulating area of blossom blight, fruit blight and fruit rot. The study was performed in integrated and organic orchard blocks on two cultivars (Újfehértói fürtös and Érdi b?term?). On both cultivars, disease progress on flowers and fruits was 2–10 times slower in the integrated than in the organic management system. The peak incidence values were 9 and 31 days after petal fall for blossom blight and fruit blight, respectively. After these dates, no new blight symptoms on flowers and/or fruits appeared and the disease was levelling off. Final blossom blight incidence ranged from 1 to 5% and from 12 to 34%, and fruit rot incidence from 2 to 6% and from 11 to 26% in the integrated and the organic orchards, respectively. The sum of fruit blight incidence ranged from 9 to 22% for the organic system, but was below 5% for the integrated system, while the final sporulating area was 5–16 mm² and <3 mm², respectively. Among the five highest Pearson's correlation coefficients, relationships between blossom blight and early fruit blight stage (r = 0·845, P = 0·0087 integrated; r = 0·901, P = 0·0015 organic), and between sporulating area and fruit rot (r = 0791, P = 0·0199 integrated; r = 0·874, P = 0·0039 organic) were the most significant relationships from an epidemic standpoint as they indicated a connection between different brown rot symptom types.     

Molecular phylogeny and morphological characterization of the aetiological agent of sour rot on fruits and vegetables in Brazil

In Brazil, sour rot is an important postharvest disease on fruits and vegetables. Geotrichum candidum (synonym Galactomyces candidus) has been reported as the main species causing this disease. However, the identity of the causal agent is still uncertain. This research aimed to determine the identity of 165 fungal isolates associated with sour rot obtained from fruits and vegetables in Brazil, and to evaluate the effect of different temperatures on the incidence of sour rot on artificially inoculated tomato fruits. Based on the phylogenetic analyses of DNA sequences from the D1/D2 domain of the large subunit (LSU) rRNA gene and morphological analyses, 129 samples belonged to Galactomyces candidus, 15 to G. candidum var. citri-aurantii, 6 to G. phurueaense, 2 to Gal. pseudocandidus, 1 to Hyphopichia burtonii, 1 to H. khmerensis, 3 to Saccharomycopsis crataegensis, 1 to S. vini, 1 to Magnusiomyces tetrasperma, 1 to Trichosporon coremiiforme, and 1 to Zygoascus meyerae. Two new species were found, namely, Geotrichum solani (on potato) and Geotrichum spondiadis (on red mombin). All isolates were pathogenic when inoculated on healthy tomato fruits, including the new species of Geotrichum, which were also inoculated into their respective hosts, that is, potatoes and red mombins. To the best of our knowledge, this study is the first to report the presence of five other genera besides Geotrichum associated with sour rot on fruits and vegetables in Brazil, which demonstrates the diversity of fungi and yeasts associated with this disease.     

Root Rot of Miniature Roses Caused by Pythium helicoides

Miniature roses growing in an ebb-and-flow watering system developed dieback during the summer growing season of 1996 in Gifu Prefecture. The main diagnostic symptoms were chlorosis of leaf followed by blight, and a brown, water-soaked root rot followed by dieback. Pythium isolates were recovered from the rotted root. The isolates form proliferous ellipsoidal papillate sporangia, spherical smooth oogonia, elongate antheridia, and aplerotic oospores. The optimum temperature for hyphal growth was 35°C with a growth rate of 34 mm/24 hr. Optimum temperature of zoospore formation (25-30°C) was lower than that of mycelial growth, and zoospores were produced even at 10°C. The isolates were identified as P. helicoides on the basis of these characteristics. In pathogenicity tests disease severity was highest at the highest tested temperature (35°C) at which the disease naturally occurred in summer. Four days after inoculation, the leaves turned yellow and the roots had a water-soaked rot, followed by leaf blight and root dieback after 7 days. The disease transmission test showed that diseased plants were found throughout the bench after 10 days. Received 4 July 2001/ Accepted in revised form 10 October 2001     

Colletotrichum falcatum and Fusarium species induce symptoms of red rot in sugarcane in Brazil

Red rot is an important disease of sugarcane, reported from the main producing countries of the crop. The main causal agent is Colletotrichum falcatum, which induces reddish internal stalk rot, resulting in loss of quality and quantity of sugars. While the occurrence of this disease has been reported in plantations in Brazil, the aetiology of the disease is not yet fully understood. We isolated and identified the fungi associated with sugarcane plants showing symptoms of red rot. Thirty isolates were recovered and grouped by morphology within the genera Colletotrichum and Fusarium. Based on phylogenetic analyses of DNA sequences from ITS, ACT, SOD, GAPDH, and EF-1α, eight isolates were identified as C. falcatum (n = 6) and C. plurivorum (n = 2). Twenty-two isolates belonged to the Fusarium fujikuroi species complex and were identified as F. sacchari (n = 8), F. proliferatum (n = 3), and F. madaense (n = 11). Coinfection with C. falcatum and Fusarium species were frequently observed. C. falcatum and Fusarium strains induced reddening of internal tissues and stalk rot in sugarcane plants, symptoms of red rot, while Fusarium species also induced symptoms of pokkah boeng. C. plurivorum, whose sexual stage was observed on the surface of stems, did not induce stalk rot or leaf symptoms. The results obtained in this study clarify the aetiological agents of red rot of sugarcane in Brazil. The conditions that lead to the development of specific symptoms of red rot or pokkah boeng are under investigation.     

Morphology,phylogeny, and pathogenicity of Trichothecium,Alternaria, and Fusarium species associated with panicle rot on Chenopodium quinoa in Shanxi Province,China

Quinoa panicle rot (QPR) is a novel disease that poses a significant threat to quinoa production in China. Typical symptoms on panicles include a film of pale pink, grey-white, or dark brown mould on the grains during the grain-filling stage. Furthermore, QPR causes quinoa grain discolouration, unfilling, and malformation. In total, 37 isolates were identified as belonging to three species: Trichothecium roseum (nine isolates), Alternaria alternata (12), and Fusarium citri (16) based on morphology, and phylogenetic and pathogenicity characterization. The present study shows for the first time that T. roseum, A. alternata, and F. citri are the pathogens responsible for QPR. An evaluation of the growth and germination rates revealed a significant difference among the three species, with T. roseum and F. citri isolates having higher fitness in warmer (25–30℃) and humid conditions (water activity ≥0.98). However, A. alternata preferred cooler (20–25℃) and more arid conditions, and germinated in a wide range of water activities (water activity of 0.90–1.00). Among the three species, T. roseum and F. citri are probably responsible for the pink and grey diseased grains in humid regions, and A. alternata for the black-brown diseased grains in arid regions. Pathogenicity tests showed that all three species could infect the quinoa panicles. The results of this study provide a basis for the recognition and management of QPR.     

Tomato early blight (Alternaria solani): the pathogen, genetics, and breeding for resistance

Alternaria solani causes diseases on foliage (early blight), basal stems of seedlings (collar rot), stems of adult plants (stem lesions), and fruits (fruit rot) of tomato. Early blight is the most destructive of these diseases and hence receives considerable attention in breeding. For over 60 years, breeding for early blight resistance has been practiced, but the development of cultivars with high levels of resistance has been hampered by the lack of sources of strong resistance in the cultivated tomato and by the quantitative expression and polygenic inheritance of the resistance. In some accessions of wild species, high levels of early blight resistance have been found, but breeding lines still have unfavorable horticultural traits from the donor parent. Recently, the first linkage maps with loci controlling early blight resistance have been developed based on interspecific crosses. These maps may facilitate marker-assisted selection. This overview presents the current knowledge about the A. solani–tomato complex with respect to its biology, genetics, and breeding.     

Characterization of Monilinia species associated with brown rot in stone fruit in Brazil

Fungi of the Monilinia genus occur worldwide and affect a wide range of economically important stone fruits. Several Monilinia species are responsible for brown rot. Although this disease is common in Brazil, Monilinia sp. genetic variability in Brazilian orchards has generally been poorly characterized. The present study represents the first report on the genetic diversity of Monilinia sp. from Brazilian orchards. The genetic structure of the Brazilian population was also compared to isolates from other countries, together with some morphological characteristics and aggressiveness. Sixty‐one isolates belonging to the Monilinia genus were obtained from different orchards in Brazilian states. Ten Monilinia fructicola isolates from the United States and one isolate from a fruit imported into Brazil were also evaluated. Phylogenetic analysis of the ITS1‐5.8S‐ITS2 region (internal transcribed spacer) clustered most Brazilian and American isolates with M. fructicola authentic strains from Q‐Bank. Two isolates (one from an imported fruit) clustered as Monilinia laxa. The results revealed M. fructicola as the prevalent species associated with brown rot in Brazilian orchards. To evaluate the intraspecific diversity of M. fructicola and M. laxa, multigene sequence analysis was performed using ITS1‐5.8S‐ITS2 and TEF1 (elongation factor 1). Whilst TEF1 is the most phylogenetically informative gene for intraspecific studies of M. fructicola, RPB2 (RNA polymerase II gene) displayed low variation in intraspecific analysis, but was an informative locus for assigning isolates to M. fructicola or M. laxa species. The amova suggests that Brazilian isolates from the States of the main producing regions belong to a single genetic population, which is genetically distinct from the US (Californian) population of M. fructicola.     

Botryosphaeriaceae species causing dieback on Annonaceae in Brazil

In Brazil, the Annonaceae species Annona muricata, A. squamosa, A. cherimola and atemoya (a hybrid of A. cherimola and A. squamosa) are cultivated in several regions, and produce fruits that are highly appreciated by consumers and are of great economic importance. Among the several diseases that can affect these crops, dieback is one of the most important, causing damage and, in the most severe cases, death of the plants. Due to the lack of suitable diagnostic studies up to now, this work aimed to identify the Botryosphaeriaceae species that cause dieback on Annonaceae in Brazil. Based on combined phylogenetic analyses of ITS, TEF-1α, TUB2 and RPB2, eight species of Botryosphaeriaceae were identified, namely Lasiodiplodia brasiliense, L. crassispora, L. hormozganensis, L. iraniensis, L. pseudotheobromae, L. subglobosa, L. theobromae and Pseudofusicoccum stromaticum. All species found in this study were pathogenic and caused symptoms of necrosis in stems and dieback. Thus, this study confirms species of Botryosphaeriaceae as causal agents of dieback on Annonaceae in Brazil.     

Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico

Lasiodiplodia theobromae is one of the most frequent fungal pathogens associated with dieback, gummosis, leaf spot, stem-end rot and fruit rot symptoms in cashew, mango, papaya and grapevine. In this study, the variation in the genetic diversity of 117 L. theobromae isolates from northeastern Brazil (n = 100) and Mexico (n = 17), which were collected from these four crops, was analysed using microsatellite markers. The results revealed low genetic diversity among L. theobromae populations and the existence of two genetic groups. All Mexican isolates were grouped with Brazilian isolates, suggesting a low level of differentiation between these populations. Furthermore, no evident host or climate-based population differentiation was observed for L. theobromae in Brazil. The populations studied were mostly clonal, but additional studies are needed to better understand the mode of reproduction of the pathogen. The low genetic diversity of L. theobromae populations in northeastern Brazil suggests that resistant cultivars could be used as a durable management strategy to reduce the impact of the diseases caused by this pathogen.     

Biological control of sclerotinia stem rot of canola using antagonistic bacteria

Stem rot caused by Sclerotinia sclerotiorum is a major fungal disease of canola worldwide. In Australia the management of stem rot relies primarily on strategic application of synthetic fungicides. In an attempt to find alternative strategies for the management of the disease, 514 naturally occurring bacterial isolates were screened for antagonism to S. sclerotiorum. Antifungal activity against mycelial growth of the fungus was exhibited by three isolates of bacteria. The bacteria were identified as Bacillus cereus (SC‐1 and P‐1) and Bacillus subtilis (W‐67) via 16S rRNA sequencing. In vitro antagonism assays using these isolates resulted in significant inhibition of mycelial elongation and complete inhibition of sclerotial germination by both non‐volatile and volatile metabolites. The antagonistic strains caused a significant reduction in the viability of sclerotia when tested in a greenhouse pot trial with soil collected from the field. Spray treatments of bacterial strains reduced disease incidence and yielded higher control efficacy both on inoculated cotyledons and stems. Application of SC‐1 and W‐67 in the field at 10% flowering stage (growth stage 4·00) of canola demonstrated that control efficacy of SC‐1 was significantly higher in all three trials (over 2 years) when sprayed twice at 7‐day intervals. The greatest control of disease was observed with the fungicide Prosaro^® 420SC or with two applications of SC‐1. The results demonstrated that, in the light of environmental concerns and increasing cost of fungicides, B. cereus SC‐1 may have potential as a biological control agent of sclerotinia stem rot of canola in Australia.     

A novel lineage in the Fusarium incarnatum-equiseti species complex is one of the causal agents of fusarium rot on melon fruits in Northeast Brazil

Fusarium rot on melon fruits is a postharvest disease and its importance in Brazil is increasing since its first report in 1999. Initially this disease was attributed to the fungus Fusarium semitectum based on pathogen morphology. However, there is controversy regarding the aetiology of this disease because, in the current species concept based on phylogenetic analysis, F. semitectum is regarded as a synonym to different Fusarium species. With the objective of elucidating the disease aetiology in Northeast Brazil, Fusarium isolates were obtained from melon fruits showing rot symptoms in the main producing areas of the country. From the phylogenetic analyses of TEF1 and RPB2 gene sequences, the isolates were identified as belonging to two phylogenetic species of the Fusarium incarnatum-equiseti species complex (FIESC), one in the Incarnatum clade (Fusarium sulawense) and the other in the Equiseti clade, which corresponds to a new lineage. The newly identified lineage is close to Fusarium lacertarum. Isolates from the two species showed morphological characteristics typical of the Incarnatum and Equiseti clades, agreeing with the molecular identification, and were pathogenic when inoculated on melon fruits. This is the first report of F. sulawense on melon fruits. The data generated in this study are potentially useful for a better management of the fusarium rot on melon.     

Stem and root rot of scarlet runner bean (Phaseolus coccineus) caused by Pythium myriotylum

A severe rot was found on the stems and roots of scarlet runner bean (Phaseolus coccineus) in Ibaraki Prefecture (Japan) in August 2004. The causal fungus was identified as Pythium myriotylum. We propose the name of stem and root rot of scarlet runner bean (“Kuki-negusare-byo” in Japanese) for this new disease.     

Phenotypic,molecular and pathogenic characterization of Phlyctema vagabunda,causal agent of olive leprosy

Olive leprosy, caused by the fungus Phlyctema vagabunda, is a classic fruit rot disease widespread in the Mediterranean basin. From 2009 to 2013, new disease symptoms consisting of small circular necrotic leaf lesions, coin branch canker and shoot dieback were observed in Spanish and Portuguese olive orchards showing intense defoliation. Phlyctema‐like anamorphs were consistently isolated from leaves and shoots with symptoms. Representative isolates from affected leaves, shoots and fruits were characterized based on morphology of colonies and conidia, optimum growth temperature and comparison of DNA sequence data from four regions: ITS, tub2, MIT and rpb2. In addition, pathogenicity tests were performed on apple and olive fruits, and on branches and leaves of olive trees. Maximum mycelial growth rate ranged between 0.54 and 0.73 mm per day. Conidia produced on inoculated apple fruits showed slight differences in morphology among the representative fungal isolates evaluated. Phylogenetic analysis clustered all of the Phlyctema‐like isolates in the same clade, identifying them as Phlyctema vagabunda. On fruits, influence of wounding, ripening and cultivar resistance was studied, with cv. Blanqueta being the most susceptible cultivar. On branches, a mycelial‐plug inoculation method reproduced olive leprosy symptoms and caused shoot dieback. On leaves, Koch's postulates were fulfilled and the pathogen caused characteristic necrotic spots and plant defoliation. This is the first time that the pathogenicity of P. vagabunda in olive leaves has been demonstrated.     

Identification of fungal pathogens and analysis of genetic diversity of Fusarium tricinctum causing root rots of alfalfa in north-east China

Alfalfa root rot is a devastating disease complex found worldwide. Population structure and genetic diversity of fungal pathogens causing alfalfa root rot in north-east China are not well understood. In this study, 480 fungal isolates were collected from six major alfalfa-growing regions in Heilongjiang province, China. They were identified as Fusarium tricinctum, F. oxysporum, F. acuminatum, F. solani, F. equiseti, Phoma medicaginis, Plectosphaerella cucumerina, Alternaria alternata, and Chaetomium globosum and caused root rot on alfalfa in greenhouse studies. F. tricinctum was the predominant species among the isolates, and P. medicaginis and C. globosum had not previously been reported causing alfalfa root rot in north-east China. Of the 73 F. tricinctum isolates identified, the majority were moderately or highly aggressive on alfalfa. No isolate of F. tricinctum was sensitive to carbendazim (1 and 10 μg/ml), indicating that, although commonly used, it is not suitable for management of the disease in this area. F. tricinctum isolates were analysed using AFLP markers and divided into eight genetic groups with 28 pairs of primers. Analysis of molecular variance indicated significant correlation between genetic groups of F. tricinctum isolates and their geographical locations or aggressiveness. Pairwise comparison and STRUCTURE analysis also indicated that geographical locations and aggressiveness of isolates had a significant effect on population differentiation. This study provides insight into the genetic diversity and reproductive biology of F. tricinctum, enhances understanding of the population diversity of alfalfa root rot pathogens in north-east China, and facilitates development of effective strategies for managing this destructive disease complex.