Autofertility in a pure line faba bean (Vicia faba L.) germplasm collection

Summary A pure line faba bean germplasm collection (BPL) was derived by a process of cyclic single plant progenies starting in 1979 through 1985. In 1985/86, 840 of these pure line accessions from 677 original populations from 41 countries were evaluated for autofertility by comparing the mean of five plants where all flowers were tripped vs. five plants with no tripped flowers for number of seeds produced (seed index). In a replicated trial grown at the same time, seed yield, 100 seed weight, number of pods per plant, seeds per pod, and number of flowers per inflorescence were also evaluated. A high number of BPL accessions failed to set seeds in the screen houses without tripping, the mean seed index measure of autofertility was 0.51 with a C.V. of 74.2%. There were marked differences among countries of origin for autofertility, with Egypt having the highest (SI = 0.94) and the USSR the lowest (SI = 0.26) autofertility, however, most countries expressed a large range, suggesting that breeders should first look in their own material for this trait rather than searching in exotic germplasm. In general, there was a higher level of autofertility in Middle Eastern countries that may be due to natural selection for non-dependency on pollinators for high yield. Contrary to the findings of others, large seeded accessions had a high autofertility (SI = 0.704) compared to small seeded accessions (SI = 0.384), however, both had similar ranges. In general, there was no significant correlations among autofertility and yield and its components. The variability found in this large pure line collection for autofertility is of potential use for developing cultivars not dependent on insect populations for high yield and for developing self-pollinated faba bean.     

Enhanced denitrification in plots of N2-fixing faba beans compared to plots of a non-fixing legume and non-legumes

Denitrification rates were studied using the C₂H₂ inhibition technique in a 2-year field experiment within plots of nodulated and non-nodulated faba beans, ryegrass, and cabbage. Denitrification rates ranged from 14.40 to 0.02 ng N₂O–N g^–1 soil dry weight h^–1. Mean denitrification increased fourfold in plots of N₂–fixing Vicia faba compared to non-nodulated V. faba mutant F48, Lolium perenne, and Brassica oleracea. The results with and without C₂H₂ treatment indicate that in the field the major part of this enhanced denitrification led to the endproduct N₂ rather than to the ozone-degrading N₂O. Higher denitrification rates of plots with N₂–fixing plants in September seemed to be caused by an increase in soil NO _inf3 ^sup- of about 20 kg ha^–1 found between July and August. Soil NO _inf3 ^sup- and soil moisture explained 67% of the variation in denitrification rates of the different soil samples over the growing seasons in the 2 years. Soil moisture explained 44% of the variation for soil planted with N₂–fixing plants and 62% for soil planted with non-fixing plants. Positive exponential relationships were obtained between denitrification rates and soil nitrate (r=0.71) and soil moisture (r=0.82).     

Collection, evaluation and classification of Greek populations of faba bean (Vicia faba L.)

Fifty-five Greek Vicia faba L. populations, collected from diverse areas, were planted at two dry and low fertility sites for evaluation and classification. Yield evaluation, which was carried out by Principal Component Analysis (PCA) on the basis of seven yield traits, showed the number of pods per plant, number of ovules and seeds per pod, and branching from the basal nodes to be the most important traits for population evaluation regarding yield. For population classification, four dissimilarity coefficients (Manhattan, Average Taxonomic Distance, Euclidean distance and squared Euclidean distance) and four multivariate methods (PCA, UPGMA, Neighbor-joining and Principal Coordinate Analysis) were evaluated using fifteen morphological and seven yield traits. Neighbor-joining was chosen as the most suitable multivariate method. This method combined with PCA for the seven yield traits, placed the populations into six groups. As revealed by the application of PCA on all twenty-two traits the grouping was based mainly on pod characteristics, stem thickness, plant height, 1000 seed weight and branching from basal nodes. Based on the results of the present study, a model is proposed for conserving cross-pollinated species, such as faba bean.     

Germplasm Management of Faba Bean (Vicia faba L.): Monitoring Intercrossing between Accessions with Inter-plot Barriers

Knowledge of gene flow is essential for designing strategies of germplasm multiplication. Inter and intra-plot gene flow and pollen dispersion between small plots in a field of Vicia faba germplasm multiplication were measured under four isolation zones at two locations. The four isolation zones were: a barren zone, a nucleocytoplasmic Vicia faba male sterile line, a Vicia faba tetraploid genotype and a Vicia narbonensis L. population. Genotypes fixed for alternative isozyme and allozyme alleles allowed the identification of inter and intra-plot hybrids through progeny testing. A set of log-likelihood ratio (LLR) G tests were used to analyze the effects of geographical location, isolation zone and genotype on the different components of gene flow. Considerable heterogeneity among the genotypes in all the components, inter and intra-plot gene flow and pollen dispersion, of gene flow has been found. It has been shown that gene flow is location, isolation zone and genotype dependent. Planting a barrier surrounding the plots rather than using a non cultivated area between plots seemed more or less efficient for preventing inter-plot gene flow depending on the genotype and the location. Specific associations between genotype and male sterile or tetraploid border rows for every location can bring about gene flow as high, or even higher, than those produced by a barren zone. Differences among the genotypes and borders in flowering overlapping appear not to be the major factor influencing the pattern of gene flow. Implications of the pattern of gene flow observed are discussed in relation to crop diversity managed by farmers.     

Genetic relationships and diversity among Brazilian cultivars and landraces of common beans (Phaseolus vulgaris L.) revealed by AFLP markers

The genetic variation and relationships among 31 accessions of Phaseolus vulgaris L., and two representatives of Vigna unguiculata L., were evaluated by AFLP analysis. A total of 263 DNA fragments across all materials were scored using nine primer combinations, averaging 32 per primer. More than 95% of the amplification products showed polymorphism, indicating high variation at the DNA level among these accessions. Pair-wise genetic similarity (Jaccard's coefficient) ranged from 0.553 to 0.840, with a mean of 0.765. Twenty-three accessions (70%) clustered into three groups. A majority of the commercial cultivars (91%) clustered within a single group, whereas the landraces were distributed along all the variation. An apparent correlation with phaseolin types was detected. Results of this study suggest that Brazilian landraces truly represent the overall genetic variability of Phaseolus vulgaris, confirming the multiple origins of these materials, and their potential as a source of variation for breeding programs.     

Genetic diversity in cucumber (Cucumis sativus L.): I. A reevaluation of the U.S. germplasm collection

Genetic variation within the U.S. cucumber collection (Cucumis sativus var. sativus L. and var. hardwickii (Royle) Alef.) was assessed by examing the variation at 21 polymorphic isozyme loci and comparing the results of this investigation with a similar previous analysis of 14 loci. About 29% (15 of 51) of the enzyme systems examined in an initial survey were polymorphic. Seven loci (Ak-2, Ak-3, Fdp-1, Fdp-2, Mpi-1, Pep-gl and Skdh) which were not previously used to estimate genetic diversity, were assessed. On average, 1.4 loci were polymorphic per enzyme system and 2.2 alleles were present per polymorphic locus. The frequency of polymorphisms was relatively low for Fdp-1(2) (0.01), Mpi-1(1) (0.03), and Skdh(1) (0.02). Principal component and cluster analyses of allelic variation at polymorphic loci separated a diverse array of 757 cucumber accessions from the U.S. National Plant Germplasm Systesm's (NPGS) collection into distinct groups by country (45 nations examined). All accessions of C. s. var. sativus were isozymically distinct from C. s. var. hardwickii, which were themselves dissimilar from each other. Data suggest that C. s. var. hardwickii is not a feral derivative of extant C. s. var. sativus populations. The allelic profile of C. s. var. sativus accessions originating from Burma, Thailand, Indonesia, Hong Kong, Zimbabwe and Ethiopia were distinct from the other accessions examined. Allelic fixation has occurred at Pgd-2 in accessions from Burma, and at Ak-2 in accessions from Zimbabwe and Ethiopia. Some of the countries examined that were in close geographic proximity (e.g., Thailand, Indonesia and Hong Kong) contained accessions with similar isozyme profiles. Accessions are fixed for certain alleles [e.g., Gr(1) (100%), Fdp-1(1) (100%) and Mpi-2(2) (50%) for accessions from Thailand, Indonesia and Hong Kong]. Grouping countries by continent or sub-continent (i.e., North and South American, China, Eastern Europe, Western Europe) and by numbers of accessions examined (i.e., India/Burma, Iran, Japan, Turkey, and remaining accessions) was used to identify accessions with unique allozymic profiles [PIs 209064 (USA), 257486 (China), 188749 (Egypt), 285607 (Poland), 369717 (Yugoslavia), 357844 (Poland), 255936 (Netherlands), 183127 (India), 200818 (Burma), 200815 (Burma), 137836 (Iran), 227013 (Iran), 227235 (Iran), 451976 (Japan), 181752 (Syria), 181874 (Syria), 169383 (Turkey), 171613 (Turkey)].     

A statistical approach to evaluate compost genotoxicity

Parallel experiments were carried out to evaluate the induction of genotoxic effects in Vicia faba seedlings treated both with aqueous and organic extracts (dimethyl sulphoxide 5%) of 13 composts, or grown on soil samples to which different doses of the same composts were added. Pearsons linear correlation coefficient and multiple regression were used to study how these two different methodological approaches (treatment with the extracts versus direct contact with the composts in soil) agree. In addition, multiple regression analysis was used to investigate the role of heavy metals and humic substances in genotoxic effects and to construct a model to be used to accurately predict potential genotoxicity of the composts. Experimental data obtained at the highest application rate of compost on soil were found to fit the model and evidenced the role of the humic substances in modulating the potential genotoxicity of the different composts.     

Variation and genetic diversity for gliadins in Spanish spelt wheat accessions

Gliadin composition has been analysed in 403 accessions of spelt wheat (Triticum aestivum ssp. spelta); 61 different patterns were found for the -gliadins, 44 for the -gliadins, 19 for the -gliadins and 15 for the -gliadins. A subset of 333 accessions belonging to fifty populations from Asturias, North of Spain, showed high levels of genetic variation (A = 3.89, P = 0.88, Ne = 3.35 and He = 0.553), indicating that 82.5% of the genetic variation was within populations, and only 18.5% among populations. Thirty-five of these populations presented more of five accessions, in this new subset the values of genetic variation were higher that those of fifty populations (A = 4.49, P = 0.91, Ne = 3.80 and He = 0.595). The genetic variation within populations was 59.7% of the total, and 40.3% among populations, which could be associated to fixation effects of some alleles by genetic drift.     

Variation in a wild groundnut species, Arachis duranensis Krapov. & W.C. Gregory

Forty-two accessions of Arachis duranensis, a wild groundnut species that has been reported as a source of resistance to several groundnut diseases, were studied for 30 quantitative traits including total protein content, oil content, and reaction to groundnut rust. Protein profiles were also investigated for variation at the molecular level. Principal component analysis was applied to 28 traits that showed significant variation. Of these, only five characters, namely, height of the main stem, length of apical leaflet on the main stem, length of isthmus between pods, width of seed, and reaction to groundnut rust, accounted for more than 61.4% of the total variation. Protein profiles of these accessions were broadly similar, except some accessions which differed in few bands. The importance of these variations in strategies for germplasm collection and breeding is discussed.Submitted as Journal Article No. 1507 by the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru P.O. 502 324 A.P. India.     

Extensive introgression of Middle American germplasm into Chilean common bean cultivars

Summary The genetic diversity of 95. representative Chilean common bean (Phaseolus vulgaris L.) landraces was analyzed using phaseolin seed protein and eight isozyme systems as genetic markers. Four types of phaseolin were found, “C”, “T”, “S” and “H”, in decreasing order of frequency. Each type had a different distribution between the Northern and Southern regions of the country. Nei’s genetic distance based on isozyme diversity indicated that a high percentage of the total variation found in this sample occurred between landraces and only a small percentage of the variation was detected within populations. Cluster analysis based on Nei’s genetic distance and a principal component analysis of isozyme frequencies did not detect a clear association between the geographic distribution of the landraces and their isozyme constitution. However, Nei’s genetic distance analysis clustered the bean landraces into two major groups which had a specific isozyme pattern, seed color, and seed size. The genetic analysis also detected a rare polymorphism for theMdh-2 locus, a null allele at theDiap-2 locus, and polymorphism for theAco-2 locus. The principal component analysis of isozyme frequencies showed that only 30% of the genotypes analyzed were similar to the Andean check and 5% of the samples were similar to Middle American check. This finding suggests a high frequency of hybridization between the Middle America and Andean gene pools in cultivated common bean from Chile.     

Genetic diversity of introduced and local Spanish persimmon cultivars revealed by RAPD markers

Persimmon culture has become an alternative for fruit growers in Italy, Israel and Spain. However, there is some confusion concerning cultivar identification in non-Asian countries were the species was introduced. Authenticating the identity of germplasm resources of persimmon would be a great value for breeding. Due to the floral biology of the persimmon species the expected genetic variability is high. RAPD markers were chosen for this study of persimmon germplasm resources in Spain. Nineteen markers were obtained from 8 primers. The average of 2.4 markers/primer was higher than that obtained in other woody fruit species. The availability of data referenced from isozymes and pomological traits revealed complete agreement among groups identified by RAPDs, isozymes and pomological traits. Results suggest that RAPD technology is adequate for fingerprinting persimmon and the data is consistent with persimmon's hypothetical origins, adaptation history and previous classification by isozymes or pomological traits. Many synonyms have been identified, mostly in cultivars from local surveys, suggesting that a few new genotypes arose in Spain since the species was introduced to Europe. By means of RAPD markers, a better identification of the European persimmon germplasm is available.     

Evaluation of genetic diversity of bread wheat landraces from Pakistan by AFLP and implications for a future collection strategy

We used amplified-fragment-length polymorphism (AFLP) markers to evaluate genetic variation in a set of bread wheat (Triticum aestivum L.) landraces and improved materials. Landraces collected from different geographic and agro-ecological zones in Pakistan in 1987, 1989 and 1991 were separated into two groups based on their geographic origins: northern (Himalaya) and south-western (Balochistan) Pakistan. Six AFLP primer combinations detected 453 AFLP markers in the 43 landrace accessions and four high-yield varieties (HYVs). Of these, 225 (49.67%) were rare (shared with < 5% of all accessions). Among these rare alleles, 23 (10.22%) were common in the Himalaya (shared with > 10% of accessions collected there) but were not found in Balochistan. We conclude that there is a higher probability of collecting rare alleles at overall, but which are in contrast locally common ones in the Himalayan region. Gene diversity was 0.17 in the Himalayan group and 0.15 in the Balochistan group. Considerable genetic variability was found in both groups. Accessions from different agro-ecological zones were indistinguishable by cluster analysis, indicating intensive seed trading within the country. Cluster analysis indicated that the landraces and the HYVs are genetically distinct; suggesting that genetic erosion of wheat landraces has been unlikely taken in place. This study provides an example of how analysis of existing materials and data, can serve as a basis for future collection planning and conservation policies.     

The evolution of lentil (Lens culinaris Medik.) cultivation in Italy and its effects on the survival of autochthonous populations

At the beginning of the 20th Century Italy was one of the most important producers of lentil in the Mediterranean basin. Presently, this pulse is mainly cultivated in marginal areas of Central and Southern Italy and in some small islands. As a result of the reduced attention devoted to lentil, several autochthonous populations have disappeared together with the traditions related to their cultivation. Moreover, how long the cultivation of those still grown today will continue is unpredictable. Governmental and local associations have a time window for anticipating a possible epoch when to grow these landraces will be no longer profitable. In the last decades the Germplasm Institute of the National Research Council (Bari, Italy) and the Institut für Pflanzengenetik und Kulturpflanzenforschung (Gatersleben, Germany) have collected 63 lentil populations in Italy, presently stored ex situ. The evaluation of this collection has shown the existence of an appreciable morphological, agronomic and genetic diversity that could foster future breeding programmes. It is concluded that there is an urgent need to promote the survival of lentil populations in situ, since this will further support the adaptation and evolution of autochthonous genotypes in their original environments.     

Nitrogen mineralization indicators under semi-arid and semi-humid conditions: influence on wheat yield and nitrogen uptake

The objectives were i) to assess indicators for potential nitrogen (N) mineralization and ii) to analyze their relationships for predicting winter wheat (Triticum aestivum L.) growth parameters (yield and N uptake, N_up) in Mollisols of the semi-arid and semi-humid region of the Argentine Pampas. Thirty-six farmer fields were sampled at 0–20 cm. Several N mineralization indicators, wheat grain yield and N_up at physiological maturity stage were assessed. A principal component (PC) analysis was performed using correlated factors to grain yield and N_up. The cluster analysis showed two main groups: high fertility and low fertility soils. In high fertility soils, combining PCs in multiple regression models enhanced the wheat yield and N_up prediction significantly with a high R² (adj R² = 0.71–0.83). The main factors that explained the wheat parameters were associated with water availability and N mineralization indicator, but they differ according to soil fertility.

Abbreviations: N: nitrogen; SOM: soil organic matter; POM: particulate organic matter; SOC: soil organic carbon; SON: soil organic nitrogen; POM-C: particulate organic carbon; POM-N: particulate organic nitrogen; N_an: anaerobic nitrogen; N_hyd: hydrolyzable N; NO₃-N: cold nitrate; N₂₀₅: N determined by spectrometer at 205 nm; N₂₆₀: N determined by spectrometer at 260 nm; Pe: extractable P; N_up: wheat N uptake; NO₃-N: inorganic N in the form of nitrate; FR: fallow rainfalls (March-Seeding rainfall); FLR: flowering rainfalls (October-December rainfall); GFR: grain filling rainfall (November rainfall); CCR: crop growing season rainfall (June-December rainfall); PCA: principal component analysis; PC: principal component; MR: multiple regression     

Genetic diversity in cucumber (Cucumis sativus L.): II. An evaluation of selected cultivars released between 1846 and 1978

Genetic variation among 155 U.S. modern and heirloom cultivars was assessed from assays of 21 polymorphic isozyme loci. Four loci (Fdp-1, Mdh-1, Mpi-1 and Pgd-1) were monomorphic. Multivariate analyses partitioned cultivars into two distinct groups: those released before 1968, and those released after 1968. Cluster analysis produced a dendrogram with 14 nodes and 28 groups. Modern U.S. and European cultivars released after 1968 differed in isozyme frequencies. Isozymic profiles clearly discriminated some cultivars with unique attributes and/or pedigrees [e.g., Windermoor Wonder (USA), Gergana (The Netherlands), Seiram (The Netherlands), Fancy Pak (USA), Dasher 2 (USA), and WI 2757 (USA)].     

Diversity among common bean populations from the Abruzzo region (Central Italy): A preliminary inquiry

The Abruzzo region (Central Italy) shows peculiar characteristics: the extension of mountain territory is the highest in mainland Italy and the whole region is less developed as compared to other Central Italy areas. Moreover, the farming systems developed with specific peculiarities parallel to shepherdy. Recently, in the area of the Gole di Popoli, ideally constituting the door of the inner and less developed part of the region, four populations of common bean were collected. Seed morphological traits, phaseolin and lectin profiles were analysed. Three populations appeared heterogeneous in phaseolin and lectin fractions. C, T, and S phaseolin types, C type being predominant, and six lectin patterns were observed. A comparison with common bean populations from the Basilicata region (Southern Italy) showed interesting differences between the two regions. The present contribution, besides the limitation due to the small number of samples, suggests that the Abruzzo, and other Italian regions with similar agro-environmental conditions, might retain highly interesting local populations.     

连栽桉树人工林土壤理化性质的主分量分析

利用主分量分析法对连栽桉树人工林土壤的理化性质进行分析,确定了影响连栽桉树人工林土壤肥力的主分量因子,并通过连栽桉树人工林主分量因子对不同代次的桉树人工林土壤肥力变化进行了分析。结果表明,各代次桉树人工林0—20cm和20—40cm的土壤主分量影响因子基本相同,由土壤的物理性质和N,P,K这3大营养元素构成的第一主分量是影响桉树人工林土壤综合肥力的最主要影响因子;桉树人工林在经过3代连栽后,林地土壤的综合肥力较第1、第2代桉树人工林土壤的综合肥力明显下降。研究结果表明,保持连栽桉树人工林地良好的土壤通气透水性和提高土壤N,P,K养分含量对保持桉树人工林的可持续发展具有重要的意义。     

Microsatellite variability within and among local landrace populations of tea, Camellia sinensis (L.) O. Kuntze, in Kyoto, Japan

Genetic variability within and among eight landrace populations of tea (Camellia sinensis (L.) O. Kuntze) located in southern Kyoto, Japan, was surveyed with six microsatellite markers. The average number of alleles per locus was 3.83 to 4.67 for landrace populations, whereas the corresponding value among modern cultivars and breeding lines was 6.63. Expected heterozygosity values averaged over loci within landrace populations ranged from 0.498 to 0.723. A similar level of variation, 0.682, was observed for cultivars and breeding lines. High fixation index values (0.177–0.417) for each population are consistent with biparental inbreeding within the population. Genetic differentiation among local populations was extremely low with F _ST = 0.062, although AMOVA revealed significant differentiation among landrace populations. We propose that these populations share a common ancestral gene pool and that some degree of artificial selection within each population has been performed by local farmers. Neighbor-joining analysis revealed that genetic relationships among populations reflect geographical location of populations. This might result from more frequent genetic exchange by nearby farmers.     

Soil pH changes during legume growth and application of plant material

During cultivation of legumes soil is acidified due to proton release from roots. As a consequence of proton release, plants accumulate organic anions which may, if returned and decomposed in the soil, neutralize the soil acids. Until now the detailed processes responsible for the change in soil pH after incorporation of plant material have not been completely understood. Using a pot experiment we studied the changes in acid and base in soil during growth of field beans (Vicia faba L. cv. Alfred) and after incorporation of the plant material into the soil. Soil pH was significantly decreased by field beans from 6.00 to 5.64 in a cultivation period of 45 days. Proton release amounted to 32.7 mmol H⁺ pot^-1, which was approximately equivalent to the accumulated alkalinity in the plant shoots (34.4 mmol). Return of field bean shoots caused a significant soil pH increase from 5.64 to 6.29. Within 7 days more than 90% of the added alkalinity was released. After 307 days incubation, soil pH decreased to 5.86 due to nitrification. In a second experiment, maize leaves (Zea mays L.), containing various concentrations of nitrogen and at various alkalinities, were incorporated into the soil. Soil pH change was positively correlated to alkalinity and malate concentration and negatively correlated to total nitrogen and water-soluble organic nitrogen of incorporated leaves. It is concluded that the soil acidification caused by legume cultivation can be partly compensated for if crop residues are returned to the soil. Addition of plant material may initially cause an increase in soil pH due to decomposition of organic anions and organic nitrogen. Soil pH may decrease if nitrification is involved. The concentrations of nitrogen and alkalinity of added plant material are decisive factors controlling soil pH change after incorporation of plant material.Dedicted to Professor J.C.G. Ottow on the occasion of his 60th birthday