Habitat use by Thymallus thymallus in a chalk stream and implications for habitat management

Abstract Results of a number of studies on the interactions between grayling, Thymallus thymallus L., and its habitat in tributaries of the River Itchen, a chalk stream in Hampshire, southern England are reported. These include an investigation into the effect of riparian shading on T. thymallus growth and population density in relation to the development of in‐stream macrophyte cover, and the use of a multi‐point decoder system to record micro‐habitat use and preference of individual T. thymallus. In all stream sections, T. thymallus recruitment fluctuated greatly. Densities were generally low often restricting meaningful comparisons. However, where large differences occurred, wooded sections, with less aquatic macrophyte cover, generally had higher densities of T. thymallus. All age groups of T. thymallus (0+, 1+ and 2+) tended to occupy hard gravel substratum, both by day and by night in the autumn and winter, and used deeper and faster water with increasing age. The 1+ and 2+ groups were generally found in water 40–70‐cm deep with a velocity between 0.3 and 0.5 m s^?1, whilst the 0+ group showed a preference for shallower water with reduced velocity at night, particularly in the winter. The results are discussed in relation to habitat management where T. thymallus occur with other salmonids.     

Short-term habitat use by young grayling, Thymallus thymallus L., under variable flow conditions in an experimental stream

Abstract  In an experimental stream containing available refuge zones, moderate and instantaneous flow variations did not cause high mortality or substantial increase in downstream migration of 2-month-old grayling, Thymallus thymallus L. Fish were able to react rapidly to spate simulations by a change in space utilization determined by changes in water velocity patterns. Reaction of fish to these experimental flow variations corresponded to a refuge strategy, i.e. seeking shelter and minimizing the distance to find it.     

The onset of downstream movement of juvenile Atlantic salmon, Salmo salar L., in a chalk stream

The downstream movements of wild Atlantic salmon, Salmo salar L., from their established feeding territories in the River Itchen, Hampshire, UK, were logged continuously over an 11-month period using a passive integrated transponder (PIT) antenna system. The time of these movements was then related to a number of monitored and calculated environmental parameters. Initial downstream movement of smolts in April was correlated with the onset of darkness, at which time salmon moved from their established feeding territories alone. No relationship was found between the number of smolts migrating and river flow or maximum daily water temperature. The timing of downstream movement of parr between October and March was random with regard to sunset and time of maximum daily water temperature, suggesting the environmental cue that initiates movement may be different outside the spring smolt period.     

Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

Abstract  The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.     

Size-related changes in habitat selection by larval grayling (Thymallus thymallus L.)

Abstract  – In a medium-sized river in northern Finland, larval grayling shifted with growth from shallow habitats with slow velocities, fine substrata and abundant vegetation cover to deeper sites with swifter velocities, coarse substrata and sparse vegetation cover within 3 weeks. Small (17–21 mm) larvae preferred water depths 10–30 cm, substrata dominated by mud or sand (<2 mm), 10–70% vegetation cover and water velocities <10 cm · s⁻¹. Middle-sized (22–25 mm) larvae preferred 30–90 cm depths, sandy substrata, <40% vegetation cover and velocities <10 cm · s⁻¹. Large (26–31 mm) larvae preferred >50 cm depths, substrata dominated by sand or boulders, <20% vegetation cover and 10–50 cm · s⁻¹ velocities. The strict habitat requirements of the smallest larval group suggest that these habitats, in particular, are important to the early survival of grayling.     

Post-stocking behaviour of hatchery-reared European grayling, Thymallus thymallus (L.), and brown trout, Salmo trutta L., in a semi-natural stream

Hatchery-reared, juvenile European grayling, Thymallus thymallus (L.), and brown trout, Salmo trutta L., were each stocked six times into an area of a semi-natural stream. The order in which the two species were released was switched after every second experimental stocking. Temporal and spatial post-stocking dispersal, effects of previously stocked species, feeding behaviour and the influences of sex and size were studied. During each 48-h experimental release period, some fish were recaptured in a trap situated 200 m downstream from the stocking site, and fish remaining in the stream after each experimental release were caught by electric fishing. Significantly more grayling than trout moved downstream and left the semi-natural stream. Proportions of stocked grayling recaptured in the trap within 2 h and from 2 to 48 h post stocking in the stream were 36.4% and 10.0%, respectively. Corresponding recapture rates for brown trout were both 1.5%. Most of the grayling and brown trout that did not leave the stream early were recaptured in deep, slow-moving water at low velocities in the release area. The presence of grayling at the time that the brown trout were stocked resulted in significantly fewer brown trout staying in the upper part of the stream. Within 48 h of their release, 33.3% and 22.8% of the grayling and brown trout, respectively, had eaten natural food items. The mean length of brown trout recaptured in the upper part of the stocking area was significantly lower than that of fish recaptured in the lower part and in the trap. Among brown trout, males showed a significantly greater propensity to eat and to stay in the upper part of the stream near the stocking site compared with females . Brown trout with natural food items in their stomachs had significantly lower mean length than trout without such items. No sex- or size-related differences were found in the spatial distribution or feeding activity of grayling.     

A patch perspective on summer habitat use by brown trout Salmo trutta in a high plains stream in Wyoming, USA

Abstract –  We quantified the use of habitat patches by brown trout, Salmo trutta , during summer conditions in a plains stream in the western United States. A Global Positioning System was used to map discrete habitat patches (2–420 m²) consisting of macrophytes, wood accumulation, or deep water. Habitat use by brown trout was monitored by radio telemetry. Brown trout used habitat in a nonrandom manner with 99% of all daytime observations and 91% of all nighttime observations occurring in patches that consisted of combinations of deep water, wood accumulations or macrophytes even though such patches constituted only 9.8% of the available habitat. Brown trout used deep water almost exclusively during the day but broadened their habitat use at night. Most fish stayed within a large plunge pool created by a low-head dam. This pool supplemented the deep-water habitat that was naturally rare in our study area and illustrates how human modifications can sometimes create habitat patches important for stream fishes.     

Linking habitat characteristics with juvenile density to quantify Salmo salar and Salmo trutta smolt production in the river Sävarån,Sweden

Abstract Habitat mapping along 85 km of river was related to juvenile (15 years of electric fishing) and smolt (3 years of screw‐trapping) abundance data to estimate salmon, Salmo salar L., and sea trout, Salmo trutta L., smolt production in the River Sävarån, northern Sweden. Spawning site selection by radio‐tagged salmon (n = 12) and sea trout (n = 4) was also assessed. Fifty‐one hectares of potential spawning and nursery habitat was found in the main stem river, representing 25% of the total river area. These areas were estimated to yield 1300–7580 salmon and 630–3540 sea trout smolts based on juvenile densities, equating with 3 years of screw‐trap data (2990–5080 salmon and 680–2520 trout smolts, respectively). A hypothetical maximum production of about 19 900 salmon smolts was predicted for the river at a density of 40, 0+ salmon 100 m^?2. Tracking adults during the spawning period identified optimal and potential reproductive areas.     

Seasonal habitat use by brook trout,Salvelinus fontinalis (Mitchill), in a second-order stream

Abstract Seasonal habitat use by over-yearling and under-yearling brook trout, Salvelinus fontinalis (Mitchill), was examined in a second-order stream in north-central Pennsylvania, USA. The habitat occupied by brook trout and available habitat were determined in a 0.5-km stream reach during the spring, summer and autumn of 1989 and the spring and summer of 1990. Cover, depth, substrate and velocity were quantified from over 2000 observations of individual brook trout. Habitat used by under-yearling brook trout was more uniform between seasons and years than that used by over-yearling brook trout. Over-yearling brook trout occupied areas with more cover and greater depth than did under-yearling brook trout, suggesting ontogenetic shifts in these variables. Differences for velocity and substrate were not as great as those for cover and depth. The selection of areas with low water velocities governed trout habitat use in spring, whereas cover and depth were the most important habitat variables in summer and autumn. Principal component analysis showed that available habitat and trout habitat centroids diverged most in spring, indicating that habitat selection by brook trout may be greatest at this time.     

River temperature and adult anadromous Atlantic salmon,Salmo salar,and brown trout,Salmo trutta

Abstract In terms of the spawning migration of adult salmon, Salmo salar L., water flow is often considered the primary factor controlling river entry and fluctuations in flow controlling when the fish subsequently migrate upstream. However, water temperature has also been suggested to modify the spawning migration of salmon, particularly their movements within estuaries and the timing of freshwater entry. Freshwater temperature is more likely to impact salmonid biology than flow, particularly in relation to temperature dependant metabolic costs, time of spawning and fecundity. Therefore, temperature may be more of a factor regulating salmonid populations in fresh water than flow itself. This study focuses on two aspects of the impact of temperature on salmonids in fresh water: first, how salmon may modify their behaviour to adapt to changes in temperature and second the potential relationship between temperature, environmental conditions (e.g. water quality) and physiology (e.g. maturation and olfaction) in regulating adult migration.     

Effect of habitat type on growth and diet of brown trout, Salmo trutta L., in stream enclosures

The effect of habitat on the growth and diet of brown trout, Salmo trutta L., stocked at the same densities in nine stream enclosures, comprising three habitat types of different quality, were tested. The habitats, which were created based on microhabitat preference data, were a shallow water habitat lacking cobbles (habitat 1), a deeper, mixed cobble-bottomed (128-384 mm diameter) habitat (habitat 2) and a large cobble-bottomed (256-384 mm) habitat of intermediate depth (habitat 3). Brown trout were found to have greater increases in total biomass in habitats 2 and 3 than in habitat 1. The pattern for length did not follow that of biomass as trout had greater increases in total length in habitat 2 than in the other two habitats. Biomass of food in trout diets reflected habitat-specific fish biomass changes, with a greater total biomass of prey as well a greater biomass of the leech, Erpobdella, in habitats 2 and 3 than in habitat 1. There were no habitat-specific differences in the biomass of benthic or drifting invertebrates in the enclosures, with the exception of a tendency for an effect of habitat on the biomass of Erpobdella. Although there may have been habitat-specific differences in food resources that were not detected, it is believed that the higher biomass growth in habitats 2 and 3 may have reflected differences in cover afforded by the deeper water and coarser substrates and/or improved foraging opportunities facilitated by the larger volumes of water in the deeper habitats in which the trout could search for prey.     

Resource use of native and stocked brown trout Salmo trutta L., in a subarctic lake

Habitat use, food composition and growth of stocked and native brown trout, Salmo trutta L., were studied in the subarctic Lake Muddusjärvi in northern Finland. Stocked brown trout and native brown trout preferred littoral and pelagic areas. Trout were stocked in October. In June stocked trout fed primarily on invertebrates while native fish were piscivorous. From July onwards the composition of the diet of both stocked and native trout was similar and consisted almost entirely of small‐sized whitefish. Brown trout were already piscivorous at a length of about 20 cm. The mean length of prey consumed was about 12 cm. Mean length‐at‐age was similar from the second year in the lake despite of the larger size of stocked fish during the first year in the lake.     

Post-stocking dispersal of European grayling,Thymallus thymallus (L.), in a semi-natural experimental stream

Abstract Artificially hatched and reared juvenile European grayling, Thymallus thymallus (L.), from three natural populations were released into an experimental stream. Two of the populations were from lakes and the third population was from a river. Post-stocking dispersal was studied by recapturing fish in traps and by electric fishing after each of the stocking exercises. On all three occasions the first fish to be recaptured were caught in a trap about 400 m downstream from the release site, within 5–12 min of release. Proportions of stocked grayling juveniles recaptured by electric fishing in the fast-flowing section of the experimental stream (the rapids) were 9.9%, 46.7% and 16.6% after the first, second and third stocking, respectively. No significant population-specific difference was found between fish caught in the downstream trap and fish recaptured in the rapids. The uppermost part of the rapids (stretch 1) and the catch in the upstream trap was dominated by fish of riverine origin. Post-stocking migration was influenced by sex but not by body size. Females showed a greater propensity to stay in the rapids compared with males. Implications of the results for stocking grayling in natural streams and regulated rivers are discussed.     

Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet

The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon Salmo salar and sea trout Salmo trutta trutta juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%), Plesiomonas (19.2%) and Carnobacterium (15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%), Aeromonas (22%) and Pseudomonas (14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included Pragia and Serratia. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella and Tiedjeia arctica. A novel phylotype of T. arctica is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species.     

The interpretation of anglers'records (trout and sea trout, Salmo trutta L., and salmon, Salmo salar L.)

Abstract. This paper collates the results of five surveys which were made to determine the average catch of anglers not making a return at game fisheries. This pilot study shows that the average catch per licence/permit ( ) may be estimated from the average and the proportion of unprompted returns, (m_u) and (p_u) respectively, by the empirical equation , for trout and sea trout, Salmo trutta L. Salmon, Salmo salar L., catcrl'rates may be best estimated from . Typical values for United Kingdom waters are tabulated for recent seasons. Rod catches of stillwater and migratory fish closely follow the Negative Binomial distribution. Their means and variances are shown to be related empirically by Taylor's power law: for daily records of stillwater trout and migratory fish , and for annual records of salmon , and of sea trout . A method of estimating the expected frequency distribution of catches at any water is shown. The distribution is truncated where the nil catches are not recorded and is censored where the bag is limited; here a microcomputer was programmed to compute the estimates of the mean and variance of the catches and to print the full distribution.     

Morphological variability of Atlantic salmon Salmo salar and brown trout Salmo trutta in different river environments

Abstract – The morphologies of sympatric juvenile Atlantic salmon Salmo salar parr and brown trout Salmo trutta parr were compared between Irish rivers with contrasting hydraulic environments – a high‐gradient and a low‐gradient tributary from the River Barrow catchment, south‐east Ireland and a high‐gradient river from the Burrishoole catchment, west of Ireland. The two catchments differ markedly in mean annual precipitation (849.0 mm year^?1 and 1370.3 mm year^?1 for the Barrow and Burrishoole catchments, respectively). Parr of both species demonstrated morphological variation between and within catchments. Changes in metrics such as pectoral fin length, body depth and body length between and within catchments suggest that hydraulic forces were a major determinant of morphological variation. Both species from the Burrishoole catchment had relatively larger pectoral fins, longer heads, larger eyes and shallower bodies than conspecifics from the Barrow catchment. In rivers subject to frequent rainfall‐driven high discharges, such as those in the Burrishoole catchment, a more fusiform body and head shape coupled with larger pectoral fins may reduce the energetic cost of maintaining position in the water column, as well as increase stability and manoeuvrability. The larger eyes in both parr species in the Burrishoole catchment could further be a response to the lower visibility of the more turbid and peat‐stained waters or to the reduced prey availability. The results of this study demonstrate that local adaptation to flow conditions can yield morphologically distinct populations and that multiple species can exhibit parallel phenotypic responses to changing environmental conditions.     

The potential of flat-bed passive integrated transponder antennae for studying habitat use by stream fishes

Abstract – Describing habitat use by stream fishes is important from both basic ecological and fisheries management points of view. The most widely used methods of measuring habitat use vary in degree of effort required, level of intrusiveness and in the level of spatial and temporal resolution. In this paper, we describe a remote monitoring technique that can provide detailed and continuous data on habitat use of individual fish in the field. The technique is based on the passive integrated transponder (PIT) system, in which a newly developed flat-bed antenna is placed on the stream bottom and simply requires a PIT-tagged fish to swim over it. We present data obtained from work using this new technology on brown trout ( Salmo trutta ) in stream enclosures, in which we describe habitat use and temporal patterns of movement by individuals and relate such data to growth rate and sex of the individual fish as well as to pool depth and time of day. In addition, we describe the range of applications of the flat-bed PIT-antenna as well as the advantages and disadvantages of using the system. ^NOTE     

Autumn microhabitat breadth differs between family groups of Atlantic salmon parr (Salmo salar) in a small chalk stream

The effect of family traits on the microhabitat use by six genetically distinct groups (three in each year of study) of juvenile Atlantic salmon tagged with passive integrated transponder (PIT) tags was studied via PIT‐tag detectors installed on the river bed in a small chalk stream of southern England, during Autumn in 2006 and 2007. Canonical correspondence analysis of the molecular and microhabitat data revealed considerable overlap in the microhabitat use of the family groups and notable differences in microhabitat breadth, which was partly influenced by sample size. The data suggest that microhabitat breadth and preferences of wild salmon are influenced by family of origin.