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1.
Dendrocalamus giganteus Munro is a high-value woody bamboo widely grown in Southeast Asia and China’s Yunnan Province. We investigated its genetic diversity in Yunnan as a prelude to considering effective breeding programs and the protection of germplasm resources. Inter-simple sequence repeat (ISSR) markers were used to assess the genetic structure and differentiation of seven populations. Seven ISSR primers generated 140 bands, of which 124 were polymorphic (88.57%). Genetic diversity within populations was relatively low, averaging 11.33% polymorphic bands (PPB), while diversity was considerably higher among populations, with PPB = 88.57%. Greater genetic differentiation was detected among populations (G ST = 0.8474). We grouped these seven populations into two clusters within an UPGMA dendrogram—one comprised the Xinping and Shiping populations from central Yunnan, the other included the remaining five populations. Mantel tests indicated no significant correlation between genetic and geographic distances among populations. Breeding system characteristics, genetic drift, and limited gene flow (N m = 0.0901) might be important factors for explaining this differentiation. Based on the overall high genetic diversity and differentiation among D. giganteus populations in Yunnan, we suggest the implementation of in situ conservation measures for all populations and sufficient sampling for ex situ conservation collections.  相似文献   

2.
The causes, magnitude and phenotypic determinants of mortality are central features of population demography. Although critical to effective conservation planning, these attributes remain poorly understood for most wild vertebrates. Exceptionally dense aggregations of garter snakes (Thamnophis sirtalis parietalis) in and around communal overwintering dens in central Manitoba provide an exceptional opportunity to enumerate these factors. Over the course of long-term field studies we obtained data on mortality of snakes in autumn as they migrated back from their summer ranges, and in winter during and after their entry into the underground dens. Some mortality sources were affected by a snake's phenotype: for example, snakes killed by motor vehicles were smaller, on average, than surviving snakes. However, two major episodes of mortality at the dens themselves (freezing during midwinter due to atypically light snow cover; and drowning due to flooding after heavy rains late in autumn) were essentially random with respect to phenotype. Mark-recapture estimates suggest that the winterkill event eliminated >60,000 snakes, comprising almost the entire populations of the three largest dens. Although such events are cryptic because the bodies of frozen animals remain underground, they are of much greater magnitude than overt mortality sources for active snakes (roadkills, predation, etc.). Thus, relatively minor habitat manipulations around the dens may contribute more to conservation of these populations than would extensive efforts to protect active snakes during their spring and autumn migrations.  相似文献   

3.
Rumex rothschildianus (Polygonaceae) is a small dioecious annual endemic to the central coastal plain of Israel. This very rare sorrel is on the verge of global extinction, as its total gene pool consists of two surviving populations only: one small and the other relatively large and flourishing. The other ten populations of this species recorded during the 20th century (all in Israel) are now extinct. Amplified fragment length polymorphism (AFLP) markers were used to evaluate the population genetic structure of the two remaining populations. Genetic diversity in R. rothschildianus was H=0.17 with 48.9% polymorphic loci. Gene flow values suggest that the differentiation between the two populations is moderate (mean Fst=0.09). Considering these genetic data, two conservation management strategies should be applied: (1) Large scale reseeding in a neighbouring nature reserve to maintain the genetic diversity detected in this study. Seeds from diverse sources should be used for repeated reseedings in order to prevent the reintroduced populations from going through a genetic bottleneck or suffering genetic drift. (2) To maintain the genetic diversity in the two remaining wild populations, and to avoid risks such as possible outbreeding depression, only intrapopulation reinforcement should be considered. These populations should be carefully monitored and protected.  相似文献   

4.
Tetraena mongolica Maxim, is a critically endangered and endemic species of westem Inner Mongolia in China. Genetic variability within and among eight extant populations of this species was assessed using ISSR PCR (13 primers). We expected a low genetic diversity level, but our results revealed an intermediate level of intraspecific genetic diversity, probably resulting from this species being in a refuge during the last glaciation (at population level: P=48.1%, Ae=1.305, HE=0.177 and Hpop=0.264; at species level: P=63.3%, A=1.368, HT=0.213 and Hsp=0.324). A low level of genetic differentiation among populations was detected based on Nei's genetic diversity analysis (16.91%), Shannon's diversity index (18.83%) and AMOVA (15.2%). Populations shared high levels of genetic identity (I=0.9516±0.013). The extensive gene flow was a plausible reason for the low genetic differentiation.  相似文献   

5.
利用14对蓝孔雀和绿孔雀的微卫星标记对白孔雀基因组DNA进行扩增,发现都能扩增出特异性条带,每对引物扩增的平均等位基因数为1.71,有7对引物具有较丰富的多态性,其中MCW0080和MCW0098最为理想。白孔雀与蓝孔雀和绿孔雀群体的遗传多样性分析结果表明,白孔雀、绿孔雀和蓝孔雀3个群体的杂合度和遗传多样性水平都很低,期望杂合度分别为0.2579、0.2482和0.2744,群体间的遗传分化系数为9.7%,群体间分化极显著(P<0.001),白孔雀与蓝孔雀的亲缘关系最近, Reynolds'遗传距离和基因流分别为0.0295和8.6112。本试验结果支持白孔雀不能成为蓝孔雀的一个亚种而只是一个品系的观点。  相似文献   

6.
Madagascar’s diverse and mostly endemic fauna and flora suffer from recent landscape changes that are primarily caused by high levels of human activities. The loss and fragmentation of forest habitats are well known consequences of human activities. In this study, we investigate the effects of forest fragmentation on presence, abundance and genetic diversity in a larger-bodied lemur species, Lepilemur edwardsi, in northwestern Madagascar. In addition, we characterized the genetic differentiation among populations and demographic changes. We found L. edwardsi at only 13 (76.5%) of 17 visited sites, 11 of which were situated in the Ankarafantsika National Park (ANP). We captured between two and 17 individuals per site. We sequenced the mtDNA d-loop of all samples and genotyped 14 microsatellite loci in two exemplary populations for demographic analyses. A negative influence on forest fragmentation could be detected, since the fragments had a lower genetic diversity than sites in the ANP. Genetic differentiation between populations ranged from low to high but was almost always significant. A typical pattern of isolation-by-distance could not be detected and the data could rather be interpreted as results of random genetic drift. The data furthermore revealed signals of a demographic collapse of about two orders of magnitude in the two exemplary sites. This decline probably started during the last few hundred years of intensified human disturbances and population growth. Given the results of this study, urgent conservation actions are needed and should concentrate on an effective protection of the few remaining populations in order to ensure the long-term survival of L. edwardsi.  相似文献   

7.
Genetic markers, controlled pollinations and chromosome analysis were used to examine the breeding system, clonal structure, genetic diversity and cytological complexity of populations of the endangered sub-alpine forb Rutidosis leiolepis. Results show that R. leiolepis: (1) has a strong sporophytic self-incompatibility system; (2) exhibits significant clonality and that the importance of vegetative reproduction increases at higher altitudes; (3) is genetically diverse, but that variation within populations decreases and differentiation among populations increases with altitude; and (4) is diploid with 2n=22 throughout its geographic range. Based on these results, low altitude populations around Cooma and Happy Valley should be made priority areas for in situ conservation in the Species Recovery Plan currently being developed by the New South Wales National Parks and Wildlife Service because they exhibit the most sexual reproduction and highest levels of genetic variation within the species. They may also be demographically more viable in the long term, having larger effective population sizes and less likelihood of mate limitation due to low S allele richness than high altitude populations. Sampling strategies for ex situ conservation should vary from large collections within populations at low altitudes to smaller collections spread across populations at higher altitudes where more of the genetic diversity is partitioned among sites. This should give maximum representation of the species' gene pool for minimum sampling effort.  相似文献   

8.
Conservation biologists pay increasing attention to the interdependence between habitat structure and genetic patterns of species and to the importance of conserving genetic diversity. A suitable model species for such a study is Polyommatus coridon, a butterfly of dry calcareous grassland. We studied the population genetic structure of 22 western German populations of this species (874 individuals). We observed no congruence between the observed genetic structure and the geographic arrangement of the studied populations. Genetic diversity was slightly higher in large populations than in small populations. Differentiation among populations was weak or even missing. Populations of an area with high habitat density showed no significant differentiation, whereas areas with low habitat densities showed significant genetic differentiation among populations. At present, hierarchical variance analysis revealed no differentiation between four distinguished limestone areas. The combination of all analytical results allow the definition of management units for P. coridon. Conservation measures are proposed from which a large number of rarer species occurring together with P. coridon will benefit.  相似文献   

9.
As the second species used for commercial coffee, evaluation of Coffea canephora Pierre ex Froehner population genetics is a challenging task for coffee breeding. This study examined the pattern of genetic variability and genetic relationships of cultivated and wild populations of C. canephora sampled across the Guineo-Congolese region of Africa and some improved populations maintained in field genebanks. A total of 293 individuals, sampled from 17 populations, were genotyped with 39 nuclear microsatellite markers. Genetic diversity and structure were investigated with both a model-based and a graphical approach; isolation by distance was also tested. Relationships between the diversity clusters are discussed with regard to differentiation due to several glacial refuges during the Last Glacial Maximum (LGM). High genetic diversity within C. canephora is confirmed with a mean number of alleles of 11.85 per marker, a mean gene diversity of 0.72 and a mean observed heterozygosity of 0.36. An overall structure of two main groups (Guinean and Congolese) subdivided in six subgroups (2 for the Guinean and 4 for the Congolese) was found, including one described for the first time in the Guinean group. A fine structure within the Guinean group was also newly detected. Genetic structure of C. canephora appears to be consistent with its geographic repartition at the continent scale. Structure of diversity was found in accordance with localizations of refuge zones during LGM and migration from this period. Results from this genetic structure study raise our capabilities to better manage and use the collections of genetics resources for breeding purposes. Those results will be used in future association studies to optimize the number of genotypes to be phenotyped.  相似文献   

10.
An analysis of the variability of genes encoding six isozyme systems (15 loci) and two storage proteins (2 loci) in landrace barley from Ethiopia is reported. The materials consisted of populations collected from sites as low as 1650 and as high as 3750 meters, covering a wide range of agro-ecological conditions and geographical areas. Of the 17 loci 7 were polymorphic and 10 monomorphic when the 95% criterion of polymorphism was applied. Despite the disproportionate monomorphic loci, polymorphism was detected in all populations when this criterion is used. The populations were found to possess fairly low mean number of alleles per locus (A = 1.5), low mean value of expected heterozygosity (H = 0.134) and a fairly high mean percentage of polymorphic loci (P = 35.3%). The mean FST= 0.474 for the populations is typical of inbreeding species. The result indicated that allelic richness is concentrated in altitude class 3 (2500–3000 m) followed by altitude class 1 (<2000 m). Altitude class 2 (2000–2500) holds an intermediate place though it is the highest in terms of expected heterozygosity (H = 0.245). Higher genetic diversity is concentrated in some geographical regions such as Shewa, Arsi, Bale compared to others (Welo, Gamu Gofa, Gojam). Genetic differentiation among the agro-ecological zones was more profound than both among the altitudes and among regions. Correlation analysis between phenotypic diversity (Shannon-Weaver diversity index) and expected heterozygosity (H) for isozyme/hordein loci revealed non significant associations except with respect to agro-ecological zones. In general, it was detected that sites in highland areas in central and northern regions may be more desirable for in situ conservation than sites in peripheral regions in terms of isozyme/hordein diversity and current rate of varietal replacement.  相似文献   

11.
Extinction of populations from anthropogenic forces rarely has a single cause. Instead, population declines result from a variety of factors, including habitat loss, inbreeding depression, disease, and climate change. These impacts often have synergistic effects that can lead to rapid decline in isolated populations, but case studies documenting such processes are rare. Here, we describe the recent decline of the last known population of timber rattlesnakes (Crotalus horridus) in the state of New Hampshire. We used polymorphic nuclear DNA markers to compare genetic diversity of this population to other populations in the region that are not isolated. We also compare results from ongoing field monitoring of these populations. Genetic analyses reveal that the New Hampshire population lacks genetic diversity and exhibits signs of a recent bottleneck. New Hampshire snakes also exhibited high levels of morphological abnormalities (unique piebald coloration, amelanistic tongues) indicative of inbreeding depression. Furthermore, after a year with exceptionally high summer rainfall, a skin infection of unknown etiology caused significant mortality in the New Hampshire population, whereas other surveyed non-inbred populations were unaffected. This case study demonstrates how different anthropogenic impacts on natural environments can interact in unexpected ways to drive threatened populations toward extinction.  相似文献   

12.
利用14对蓝孔雀(Pavo cristatus)和绿孔雀(P.muticus)的微卫星标记对白孔雀基因组DNA进行扩增,发现都能扩增出特异性条带,每对引物扩增的平均等位基因数为1.71,有7对引物具有较丰富的多态性,其中MCW0080和MCW0098标记期望杂合度分别为0.7207和0.7571,多态信息含量分别为0.658和0.695,表现出丰富的遗传多样性和较高的选择潜力。白孔雀×蓝孔雀和绿孔雀群体的遗传多样性分析结果表明,白孔雀、绿孔雀和蓝孔雀3个群体的杂合度和遗传多样性水平都很低,期望杂合度分别为0.2579、0.2482和0.2744,群体间的遗传分化系数为9.7%,群体间分化极显著(P<0.001),白孔雀与蓝孔雀的亲缘关系最近,Reynolds'遗传距离和基因流分别为0.0295和8.6112,表明白孔雀不是蓝孔雀一个亚种。  相似文献   

13.
Genetic variation and genetic structure of black spruce (Picea mariana L.) populations growing in wet land (lowlands) and dry lands (uplands) with different levels of metal contaminations were analyzed using ISSR. Polymorphic loci (P%) ranged from 65% to 90% with a mean of 75%. Nei??s gene diversity (h) varied from 0.264 to 0.359 with a mean of 0.310, and Shannon??s index (I) ranged from 0.381 to 0.524 with a mean of 0.449. The level of genetic variation was higher in populations from wet lands than those from dry lands. Variation within populations accounts for most of total genetic variation. The genetic distance among the black spruce (P. mariana) populations ranged from 0.171 to 0.351. The present study indicates that genetic variation and long-term exposure to metals (more than 30 years) are not associated. Cytological analysis of black spruce seeds from metal-contaminated and -uncontaminated areas showed normal mitotic behavior during prophase, metaphase, anaphase, and telophase.  相似文献   

14.
Hemigenia exilis (Lamiaceae) is a rare plant endemic to serpentine soils of the Goldfields of Western Australia. The species was presumed extinct until 1995, when it was re-discovered on a nickel ore deposit. To delineate the origin and extent of seed collection for rehabilitation after mining, and to identify the impact of removing one population due to mining, we assessed level and partitioning of genetic variation and differentiation. Twelve populations were sampled for DNA fingerprinting using the random amplified polymorphic DNA (RAPD) technique. Ten primers produced 89 bands, 97% being polymorphic. Genetic diversity within populations ranged from 0.197 to 0.409, averaging 0.38 at the species level, which is high compared with most other endemic species. Heterozygosity within populations ranged from 0.355 to 0.431, averaging 0.27 over the species. AMOVA partitioned over 80% of the total variation within populations. Multidimensional scaling revealed weak but significant differentiation into a northern and southern provenance. Despite selective sampling, the genetic data provided useful information for the management of Hemigenia exilis. For restoration, seed should be collected from a range of habitats of several populations, while keeping the two provenances separate. This strategy is likely to maintain high genetic diversity and locally adapted populations.  相似文献   

15.
Genetic diversity of 70 populations of niger (Guizotia abyssinica) representing all its growing regions in Ethiopia was investigated using random amplified polymorphic DNA (RAPD) to reveal the extent of its populations genetic diversity. Ninety-seven percent of the loci studied was revealed to be polymorphic for the whole data set. The within population diversity estimated by Shannon diversity index and Nei gene diversity estimates was revealed to be 0.395 and 0.158, respectively. The extent of genetic variation of populations from major niger producing regions was significantly lower than that of populations from other regions; however, it is distributed regardless of altitude of growth. Genetic differentiation between populations was estimated with Shannon index as G ST (0.432), Nei’s G ST (0.242) and AMOVA based F ST (0.350) and appears to be equivalent to the average values calculated from various RAPD based studies on outcrossing species. Higher proportion of the variation detected by AMOVA resided within populations (64.58%) relative to the amount of variation among populations (35.42%). UPGMA cluster analysis showed that most of the populations were clustered according to their region of origin. However, some populations were genetically distant from the majority and seem to have unique genetic properties. It is concluded that the crop has a wide genetic basis that may be used for the improvement of the species through conventional breeding and/or marker assisted selection. Collection of germplasm from areas not yet covered and/or underrepresented is the opportunity to broaden the genetic basis of genebank collection.  相似文献   

16.
The effect of heavy metal and gaseous pollution on genetic make up due to selection and mortality was studied in eight European Scots pine (Pinus sylvestris L.) populations. Genetic structure of these populations was evaluated after 13 years of growth at two sites, one located in the vicinity of a copper smelter in Glogow (southern Poland) and another in a control area (Kornik, central Poland). Based on data from 10 enzymatic loci, studied by starch gel electrophoresis, the following genetic parameters were characterized: mean number of alleles and genotypes per locus, heterozygosity and genotype polymorphism index, genetic diversity among sites and genetic similarity according to Nei and Roychoudhury. Most of the parameters differed both between sites as well as between pairs of populations. Mean multilocus observed heterozygosity and genotype polymorphism indices were 8% and 6% lower respectively at the control site than in the polluted one. Populations from the site polluted by heavy metals demonstrate higher genetic diversity then those from the control. Genetic similarities showed differentiation of particular populations from both locations in response to industrial pollution. These results provide evidence that the general pattern of adaptation strategy of populations to pollution stress is connected with increasing genetic variation. The best isoenzymatic markers for monitoring changes in the genetic structure of Scots pine populations under the influence of industrial pollution are fluorescent esterase (FEST), glutamic-oxaloacetatic transaminase (GOT-A and GOT-B), alcohol dehydrogenase (ADH), malate dehydrogenase (MDH-A) and shikimate dehydrogenase (ShDH-A) loci.  相似文献   

17.
Clianthus is an acutely threatened, bird-pollinated genus endemic to New Zealand, represented in the wild by only one population of C. puniceus and 11 populations of C. maximus, each with very few individuals (typically <10 per population). A limited number of named Clianthus cultivars of indeterminate origin are commonly grown as ornamentals. Genomic DNA from individual Clianthus plants was extracted for genetic diversity analysis using a range of molecular markers, including amplified fragment length polymorphism (AFLP). Data were analysed by the unweighted pair-group method with arithmetic averaging (UPGMA), the generation of Neighbor-Joining trees, and analyses of molecular variance (AMOVA). Genetic distance between wild populations of C. maximus was highly correlated with geographical distance between populations. Sequencing of intron 2 of a putative partial homologue of the floral meristem identity gene LEAFY (CmLFY) revealed a 7 bp deletion that was exhibited homozygously in the more northern populations of C. maximus, and in all individuals tested from the sole population of C. puniceus. This deletion was not exhibited in more southern populations of C. maximus. Further, one geographically intermediate population contained some plants that were heterozygous for the deletion. Parallel analyses of cultivated Clianthus genotypes, more than half of which were also homozygous for the 7 bp deletion, showed that these were not representative of the broad, but threatened, diversity remaining in the wild. It is argued that wild populations of C. maximus are unlikely to have arisen from the escape of plants from cultivation. Conservation effort should focus on the protection and study of the extant plants in these wild populations, rather than on the introduction of disturbance regimes to uncover potential seed banks.  相似文献   

18.
Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ramie populations, with an average of 10.25 alleles per locus. Cultivated ramie gene pool harbors approximately 82.9 % of the SSR diversity presented in wild B. nivea var. nivea. It is suggested that ramie has experienced a relatively moderate domestication bottleneck. The distribution of genetic diversity shows that genetic diversity is relatively high in populations along the Yangtze River compared to the peripheral ones. The scatter plots of principal coordinates analysis indicated that there are three well-supported varieties in B. nivea. The NJ tree and the distribution of genetic diversity showed that ramie has been domesticated in the middle and lower regions of the Yangtze valley, and populations in Sichuan province have been introduced from this region, forming naturalized populations.  相似文献   

19.
Yam (Dioscorea spp.) is widely cultivated in China and many landraces are maintained by local farmers. However, there is little information available about their diversity and species identity. In this study, inter simple sequence repeat (ISSR) and sequence related amplified polymorphism (SRAP) techniques were used to assess genetic diversity within 21 yam landraces from seven cultivated populations. We observed high level of polymorphism among these landraces, specifically, 95.3 % for ISSR and 93.5 % for SRAP. Analysis of molecular variance revealed a significantly greater variation among the four yam species (40.39 %) and their populations (35.78 %) than within the populations (23.83 %). The unweighted pair group method arithmetic averages clusters and principal component analysis for 21 landraces formed four well-separated groups containing landraces of each of the four species, namely, Dioscorea opposita Thunb., Dioscorea alata L., Dioscorea persimilis Prain et Burkill, and Dioscorea fordii Prain et Burkill. The ISSR and SRAP primers were highly discriminatory among the 21 landraces; all 21 landraces could be easily differentiated using these primers. The average mean of gene flow (Nm = 0.1081) estimated from high genetic differentiation (Gst = 0.8222) suggested that gene flow among the populations was relatively restricted. The lack of genetic diversity within individual yam species suggests that it is critical to develop long-term strategies for enhancing genetic diversity within various yam species.  相似文献   

20.
In situ population studies of wild relatives of crops are crucial for the conservation of plant genetic resources, especially in regions with high genetic diversity and a risk of local extinction. Ethiopia is the center of origin for sorghum, yet little is known about the genetic structure of extant wild populations. Using 9 Simple Sequence Repeat loci, we characterized 19 wild populations from five regions, 8 local cultivar populations from three regions, and 10 wild sorghum accessions from several African countries. To our knowledge, this is the most comprehensive study to date of in situ wild sorghum populations in Africa. Genetic diversity corrected for sample size was significantly greater in the wild populations in situ than in local cultivars or the accessions. Approximately 41 % of the genetic variation in the wild plants was partitioned among populations, indicating a high degree of differentiation and potential value for germplasm conservation, and the average number of migrants (Nm) per generation was 0.43. Cluster analyses showed that some wild populations were grouped by geographic region, whereas others were not, presumably due to long-distance seed movement. Four wild populations from disjunct regions formed a unique cluster with an Ethiopian accession of subsp. drummondii and probably represent a weedy race. STRUCTURE and other analyses detected evidence for crop-wild hybridization, consistent with previous molecular marker studies in Kenya, Mali, and Cameroon. In summary, in situ wild sorghum populations in Ethiopia harbor substantial genetic diversity and differentiation, despite their close proximity to conspecific cultivars in this crop/wild/weedy complex.  相似文献   

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