Relationships of soil respiration to microbial biomass, substrate availability and clay content

The roles of microbial biomass (MBC) and substrate supply as well as their interaction with clay content in determining soil respiration rate were studied using a range of soils with contrasting properties. Total organic C (TOC), water-soluble organic carbon, 0.5 M K₂SO₄-extractable organic C and 33.3 mM KMnO₄-oxidisable organic carbon were determined as C availability indices. For air-dried soils, these indices showed close relationship with flush of CO₂ production following rewetting of the soils. In comparison, MBC determined with the chloroform fumigation-extraction technique had relatively weaker correlation with soil respiration rate. After 7 d pre-incubation, soil respiration was still closely correlated with the C availability indices in the pre-incubated soils, but poorly correlated with MBC determined with three different techniques—chloroform fumigation extraction, substrate-induced respiration, and chloroform fumigation-incubation methods. Results of multiple regression analyses, together with the above observations, suggested that soil respiration under favourable temperature and moisture conditions was principally determined by substrate supply rather than by the pool size of MBC. The specific respiratory activity of microorganisms (CO₂-C/MBC) following rewetting of air-dried soils or after 7 d pre-incubation was positively correlated with substrate availability, but negatively correlated with microbial pool size. Clay content had no significant effect on CO₂ production rate, relative C mineralization rate (CO₂-C/TOC) and specific respiratory activity of MBC during the first week incubation of rewetted dry soils. However, significant protective effect of clay on C mineralization was shown for the pre-incubated soils. These results suggested that the protective effect of clay on soil organic matter decomposition became significant as the substrate supply and microbial demand approached to an equilibrium state. Thereafter, soil respiration would be dependent on the replenishment of the labile substrate from the bulk organic C pool.     

Seasonal variations of soil microbial biomass and activity in warm- and cool-season turfgrass systems

Plant growth can be an important factor regulating seasonal variations of soil microbial biomass and activity. We investigated soil microbial biomass, microbial respiration, net N mineralization, and soil enzyme activity in turfgrass systems of three cool-season species (tall fescue, Festuca arundinacea Schreb., Kentucky bluegrass, Poa pratensis L., and creeping bentgrass, Agrostis palustris L.) and three warm-season species (centipedegrass, Eremochloa ophiuroides (Munro.) Hack, zoysiagrass, Zoysia japonica Steud, and bermudagrass, Cynodon dactylon (L.) Pers.). Microbial biomass and respiration were higher in warm- than the cool-season turfgrass systems, but net N mineralization was generally lower in warm-season turfgrass systems. Soil microbial biomass C and N varied seasonally, being lower in September and higher in May and December, independent of turfgrass physiological types. Seasonal variations in microbial respiration, net N mineralization, and cellulase activity were also similar between warm- and cool-season turfgrass systems. The lower microbial biomass and activity in September were associated with lower soil available N, possibly caused by turfgrass competition for this resource. Microbial biomass and activity (i.e., microbial respiration and net N mineralization determined in a laboratory incubation experiment) increased in soil samples collected during late fall and winter when turfgrasses grew slowly and their competition for soil N was weak. These results suggest that N availability rather than climate is the primary determinant of seasonal dynamics of soil microbial biomass and activity in turfgrass systems, located in the humid and warm region.     

Interactions between microclimatic variables and the soil microbial biomass

Summary Soil moisture, temperature, microbial substrate-induced respiration and basal respiration were monitored in two plots in an agricultural field from April 30 to September 25, 1987, and in a further two plots from May 26 to August 27, 1988. An attempt to relate biological variables to microclimatic variables was made through the use of correlation analysis. The microbial substrate-induced and basal respiration were both strongly positively correlated with the soil moisture content, and to a lesser extent positively related to soil temperature, especially when partial correlation was used to control for variation in soil moisture. Short-term changes in substrate-induced and basal respiration were correlated with changes in soil moisture but were largely independent of soil temperature. The ratio of basal to substrate-induced respiration (indicating the respiration: biomass ratio and therefore ecosystem stability or persistence) was negatively associated with the soil moisture content and in some instances with soil temperature when partial correlation analysis (correcting for soil moisture variation) was used. This suggests that the climatic conditions which contributed to the lowest ecosystem stability were low temperature, low moisture conditions.     

Comparison of methods for extraction of organic N monomers from soil microbial biomass

One way of investigating the function of soil is via the pool of low molecular weight organic compounds in the soil microbial biomass. This is because low molecular weight organic compounds have key roles in metabolism of soil microbes, can function in osmotic adjustment and other stress responses, and are intermediates in the breakdown of polymers to inorganic nutrients. Methods for measuring low molecular weight microbial metabolites in soil rely upon extracting total metabolites and then subtracting the contribution from metabolites in the soil extracellular matrix (i.e. microbial = total − extracellular). Recent studies have tested methods for extracting organic N monomers from the extracellular matrix of soil, but there has not been similar testing of methods for extracting total organic N monomers. The aims of this study were to examine methods for extracting total organic N monomers by a) contrasting chloroform gas fumigation with chloroform direct extraction, and b) examining whether it is possible to extract soil with two methods that combine quenching of metabolic activity with extraction, namely cold methanol/chloroform/water and hot aqueous ethanol. To evaluate methods, organic N compounds were extracted from soil and then capillary electrophoresis–mass spectrometry identified and quantified 42 organic N monomers including amino acids, quaternary ammonium compounds, nucleobases and nucleosides, amines and polyamines. Absolute concentrations of 32 out of the 42 quantified organic N monomers were significantly different between soil extracted by chloroform gas fumigation and chloroform direct extraction. These differences were probably a function of gains and losses of compounds due to oxidation, hydrolysis and deamidation during the two-day chloroform gas fumigation. Cold methanol/chloroform/water yielded large amounts of the extremely labile compound ergothioneine, probably because the extraction method rapidly quenched metabolic activity. The primary limitation of extraction with methanol/chloroform/water is that it was ineffective at extracting strongly cationic compounds (e.g. polyamines). Extraction with hot aqueous ethanol was unsuccessful with soil presumably because soil microbes are difficult to lyse. It is recommended that future studies examining organic N monomers in soil microbial biomass use chloroform direct extraction or cold methanol/chloroform/water rather than chloroform gas fumigation.     

Short-term effects of tillage systems on active soil microbial biomass

 Conservation tillage, and especially no-tillage, induce changes in the distribution of organic pools in the soil profile. In long-term field experiments, marked stratification of the total soil microbial biomass and its activity have been observed as consequence of the application of no-tillage to previously tilled soils. Our objective was to study the evolution of the total and active soil microbial biomass and mineralized C in vitro during the first crop after the introduction of no-tillage to an agricultural soil. The experiment was performed on a Typic Hapludoll from the Argentinean Pampa. Remaining plant residues, total and active microbial biomass and mineralized C were determined at 0–5 cm and 5–15 cm depths, at three sampling times: wheat tilling, silking and maturity. The introduction of no-tillage produced an accumulation of plant residues in the soil surface layer (0–5 cm), showing stratification with depth at all sampling dates. Active microbial biomass and C mineralization were higher under no-tillage than under conventional tillage in the top 5 cm of the profile. The total soil microbial biomass did not differ between treatments. The active soil biomass was highly and positive correlated with plant residues (r ²=0.617;P<0.01) and with mineralized C (r ²=0.732;P<0.01). Consequently, the active microbial biomass and mineralized C reflected immediately the changes in residue management, whereas the total microbial biomass seemed not to be an early indicator of the introduction of a new form of soil management in our experiment. Received: 23 February 1999     

Influence of polychlorinated biphenyls on microbial biomass and its activity in grassland soil

Microbial biomass content, soil respiration and biomass specific respiration rate were measured in two parts of an area polluted by a municipal waste incinerator [polychlorinated biphenyls (PCBs) from combustion processes]. The soils in the studied parts differed significantly only in their levels of PCBs. The concentration of PCBs found in a control plot (4.4 ng g^-1 soil) can be regarded as a background value while the polluted plot contained an increased amount of PCBs (14.0 ng g^-1 soil). A significantly lower microbial biomass (decreased by 23%, based on the chloroform-fumigation extraction technique) and a lower specific respiration rate (decreased by 14%) were observed in the polluted plot in comparison with the control plot at the end of experimental period (1992–1994). Furthermore, a lower ability of microorganisms in the polluted plot to convert available C_org into new biomass was found in laboratory incubations with glucose-amended samples.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.     

4种熏蒸剂处理对土壤可溶性有机氮和微生物量碳氮的影响

采用室内恒温通气培养法,以北京大棚蔬菜地土壤为研究对象,以未使用熏蒸剂土壤为对照,研究4种熏蒸剂[氯化苦(Pic)、1,3-二氯丙烯(1,3-D)、二甲基二硫(DMDS)和威百亩(MS)]对土壤可溶性氮素和微生物量碳、氮的影响。结果表明,4种熏蒸剂处理均能增加土壤中可溶性有机氮的含量,熏蒸处理后敞气0 d时,Pic、MS、DMDS和1,3-D处理的土壤可溶性有机氮累积量分别为47.55 mg·kg-1、42.15 mg·kg-1、40.34 mg·kg-1和32.02 mg·kg-1,较对照(29.97 mg·kg-1)分别增加58.67%、40.65%、34.61%和6.87%。敞气后14~84 d,Pic、DMDS和MS处理DON含量仍持续上升,1,3-D和对照变化不大,各处理之间DON含量差异显著。4种熏蒸剂处理后短时间内,土壤中可溶性氨基酸(DAA)与对照相比大幅上升,在熏蒸后7 d达到最大值,其中Pic处理的上升幅度最大,为12.87 mg·kg-1,对照DAA含量最低,为5.74 mg·kg-1。4种熏蒸剂处理之后,土壤中微生物量碳和氮均呈现急剧下降的趋势,其中Pic处理对微生物的杀灭作用最强,敞气后0 d,Pic处理的微生物量碳和微生物量氮含量分别比对照下降69.39%和70.95%,MS和DMDS次之,1,3-D的杀灭作用最弱。     

Freeze-dried soil extraction method for the measurement of microbial biomass C

A new method for the measurement of microbial biomass C by direct extraction of freeze-dried soil with either 0.5M K₂SO₄ or 0.5M NaHCO₃ was evaluated. The underlying principle of the method is that rehydrating a freeze-dried soil releases cytoplasmic organic compounds from desiccated and disrupted microbial cells. Nineteen soils under various management regimes were sampled to test the proposed method, in which each soil sample was split into two subsamples. One subsample was kept in the field-moist condition at 4°C. The other subsample was brought to 100% water-holding capacity and frozen at –20°C for 24h. The frozen soil was then freezedried. Both subsamples were extracted with 0.5M K₂SO₄ or 0.5M NaHCO₃ at a soil-to-extractant ratio of 1-to-4 (w/v) and organic C determined in the extract (C_{K2 SO4} or C_NaHCO3). The net freeze-dry stimulated increase in extracted C was correlated (r ²=0.98 for C_{K2 SO4} or 0.93 for <$>\rm C_{NaHCO_3})<$> more closely with microbial biomass C (C_MB) measured as net evolution of CO₂–C by chloroform fumigation incubation (CFI) than with total C (r ²=0.42 for C_{K2 SO4} or 0.47 for C_NaHCO3). Based on linear regression equations, extraction efficiency coefficients (K _EC) were used to calculate C_MB from C_{K2 SO4} or C_NaHCO3 as follows: C_MB=C_{K2 SO4}/0.152±0.004 C_MB=C_NaHCO3/0.257±0.01 The relationship between the C_MB and the flushes of C extracted after rehydration of freeze-dried soil showed that the K _EC values were more consistent for C_{K2 SO4} than C_NaHCO3. The freeze-dried soil extraction was a fast, precise, reliable and safe method for measuring microbial biomass C in soil. Received: 27 May 1996     

Ratios of microbial biomass estimates to evaluate microbial physiology in soil

Soil microbial biomass data derived from fumigation–extraction (FE), substrate-induced respiration (SIR) and ATP estimations differed significantly and were significantly correlated, which agrees to previous studies. In a second step, the SIR/FE, ATP/FE and SIR/ATP ratios were calculated to evaluate the glucose-responsive and active component of the microbial (active and resting) biomass and the glucose-responsive component of the active microbiota. Soils were sampled along gradients within and between associated ecosystems in Northern Germany, Denmark and along a gradient of heavy metal pollution in Finland. The ratios indicated that the active portion and glucose-responsive component decreased with proceeding litter decomposition, higher degree of sustainable land management practices and higher degree of heavy metal contamination. This work was presented at the workshop ‘Non-molecular manipulation of soil microbial communities’ at the University of Udine, Udine, Italy, 17–20 October 2004; convened by P.C. Brookes and M. De Nobili and supported by European Science Foundation.     

The effect of tropical forest conversion on soil microbial biomass

We investigated the effects of converting forest to savanna and plough land on the microbial biomass in tropical soils of India. Conversion of the forest led to a significant reduction in soil organic C (40–46%), total N (47–53%), and microbial biomass C (52–58%) in the savanna and the plough land. Among forest, savanna, and plough land, basal soil respiration was maximum in the forest, but the microbial metabolic quotient (qCO₂ was estimated to be at a minimum in the forest and at a maximum in the plough land.     

一种测定淹水土壤中微生物生物量碳的方法:液氯熏蒸浸提—水浴法

针对氯仿熏蒸浸提法测定淹水土壤微生物生物量碳时存在的问题，进行了测定方法的研究，建立了适合淹水土壤微生物生物量碳测定的新方法：液氯熏蒸浸提-水浴法，即在淹水土壤加入一定量的液态氯仿后，直接置于常压下熏蒸，然后用0．5μmolL^-1K2SO4溶液浸提，随后将浸提液放置于100℃水浴中以排除其中的残余氯仿，最后采用TOC分析仪测定浸提液中的有机碳含量。本方法既符合氯仿熏蒸法的原理，在操作上又简便可行，是一种测定淹水土壤微生物生物量碳的理想方法。     

Ergosterol and microbial biomass relationship in soil

Ergosterol and microbial biomass C were measured in 26 arable, 16 grassland and 30 forest soils. The ergosterol content ranged from 0.75 to 12.94 g g^-1 soil. The geometric mean ergosterol content of grassland and forest soils was around 5.5 g g^-1, that of the arable soils 2.14 g g^-1. The ergosterol was significantly correlated with biomass C in the entire group of soils, but not in the subgroups of grassland and forest soils. The geometric mean of the ergosterol: microbial biomass C ratio was 6.0 mg g^-1, increasing in the order grassland (5.1), arable land (5.4) and woodland (7.2). The ergosterol:microbial biomass C ratio had a strong negative relationship with the decreasing cation exchange capacity and soil pH, indicating that the fungal part of the total microbial biomass in soils increased when the buffer capacity decreased. The average ergosterol concentration calculated from literature data was 5.1 mg g^-1 fungal dry weight. Assuming that fungi contain 46% C, the conversion factor from micrograms ergosterol to micrograms fungal biomass C is 90. For soil samples, neither saponification of the extract nor the more effective direct saponification during extraction seems to be really necessary.     

Estimation of microbial biomass potassium in paddy field soil

Abstract

Potassium (K) in microbial cells, microbial biomass K, in soil has been recently recognized as a K pool for plant growth. We determined soil microbial biomass K in paddy fields to reveal its importance as a K pool in paddy field soil for the first time. Microbial biomass K ranged from 5 to 21 mg K kg^?1 in the soil samples periodically collected from a paddy field and the value corresponded to 41% of the exchangeable K on average. Both microbial biomass K and exchangeable K increased conspicuously due to the long-term application of livestock manure compost or rice straw compost. Biomass K was higher than exchangeable K under K-deficient conditions in the long-term experimental plots without K application. The present study revealed that the microbial biomass contained considerable amounts of K in paddy field soil, indicating the need for evaluation of the microbial biomass K as a source and a stock of K in soil that has been overlooked.     

The influence of tillage on the proportion of organic carbon and nitrogen in the microbial biomass of medium-textured soils in a humid climate

Summary Microbial biomass C and N respond rapidly to changes in tillage and soil management. The ratio of biomass C to total organic C and the ratio of mineral N flush to total N were determined in the surface layer (0–5 cm) of low-clay (8–10%), fine sandy loam, Podzolic soils subjected to a range of reduced tillage (direct drilling, chisel ploughing, shallow tillage) experiments of 3–5 years' duration. Organic matter dynamics in the tillage experiments were compared to long-term conditions in several grassland sites established on the same soil type for 10–40 years. Microbial biomass C levels in the grassland soils, reduced tillage, and mouldboard ploughing treatments were 561, 250, and 155 g g^-1 soil, respectively. In all the systems, microbial biomass C was related to organic C (r=0.86), while the mineral N flush was related to total N (r=0.84). The average proportion of organic C in the biomass of the reduced tillage soils (1.2) was higher than in the ploughed soils (0.8) but similar to that in the grassland soils (1.3). Reduced tillage increased the average ratio of mineral N flush to total soil N to 1.9, compared to 1.3 in the ploughed soils. The same ratio was 1.8 in the grassland soils. Regression analysis of microbial biomass C and percent organic C in the microbial biomass showed a steeper slope for the tillage soils than the grassland sites, indicating that reduced tillage increased the microbial biomass level per unit soil organic C. The proportion of organic matter in the microbial biomass suggests a shift in organic matter equilibrium in the reduced tillage soils towards a rapid, tillage-induced, accumulation of organic matter in the surface layer.     

Examination of microbial biomass in beech forest moder profiles

Microbial biomass C, ATP, and substrate-induced respiration were measured in the organic layers and the mineral A horizon of three beech forest soils with moder humus differing in Ca and Mg supply. Analyses of variance showed that horizon-specific differences explained most of the variance in the three microbial parameters. All three were significantly interrelated, with Spearman rank correlation coefficients of between 0.86 and 0.93. However, differences in the decline of these parameters with depth led to horizon-specific differences in their ratios. Thus, the ratios were not markedly interrelated. The mean ATP: microbial C ratio was 5.2 mol ATP g^-1 C in the L 2 layer, 19.5 in the F layers, and 9.6 in the H and A horizons. The ratio of substrate-induced respiration to microbial C varied between 39.3 and 82.2 O₂h^-1 g^-1 C in the F1 layers and between 5.3 and 32.1 l in the other layers. It is concluded that the use of different parameters can help to analyze both horizonand site-specific differences in microbial performance.     

Effect of temperature on soil microbial biomass and its metabolic quotient in situ under different tillage systems

Variations in the microbial biomass and the in situ metabolic quotient (qCO₂) due to climatic conditions were determined in a typical soil from the Argentine Rolling Pampa. Microbial C was evaluated by fumigation-incubation and qCO₂ was calculated using soil respiration in the field. An inverse relationship between microbial C and soil temperature was fitted to a model (r ²=0.90, P=0.01). No significant association with the soil water content was detected because the soil was generally near field capacity and thus water availability did not limited microbial growth and activity. Values of qCO₂ increased (r ²=0.89, P=0.01) as the result of metabolic activatìon, likely induced by a higher maintenance energy requirement at high temperatures. The highest values of qCO₂ were obtained when microbial C was the lowest, which was attributed to self consumption of microbial C in the presence of high temperatures. Consequently, microbial C was generally higher (P=0.05) in winter than in summer. Therefore, when microbial C is used as an index of soil biological activity, the influence of temperature should be taken into account.     

Organic matter, microbial biomass and enzyme activity of soils under different crop rotations in the tropics

Soil organic matter level, soil microbial biomass C, ninhydrin-N, C mineralization, and dehydrogenase and alkaline phosphatase activity were studied in soils under different crop rotations for 6 years. Inclusion of a green manure crop of Sesbania aculeata in the rotation improved soil organic matter status and led to an increase in soil microbial biomass, soil enzyme activity and soil respiratory activity. Microbial biomass C increased from 192 mg kg^–1 soil in a pearl millet-wheat-fallow rotation to 256 mg kg^–1 soil in a pearl millet-wheat-green manure rotation. Inclusion of an oilseed crop such as sunflower or mustard led to a decrease in soil microbial biomass, C mineralization and soil enzyme activity. There was a good correlation between microbial biomass C, ninhydrin-N and dehydrogenase activity. The alkaline phosphatase activity of the soil under different crop rotations was little affected. The results indicate the green manuring improved the organic matter status of the soil and soil microbial activity vital for the nutrient turnover and long-term productivity of the soil. Received: 7 January 1996     

Grazing and plant-canopy effects on semiarid soil microbial biomass and respiration

The major objectives of this study were to determine the influence of grazing on the soil microbial biomass and activity in semiarid grassland and shrubland areas and to quantify the canopy effect (the differences in soil microbial biomass and activities between soils under plant canopies and soils in the open between plants). We also quantified changes in microbial biomass and activity during seasonal transition from dry to moist conditions. Chronosequences of sites withdrawn from grazing for 0, 11, and 16 years were sampled in a grassland (Bouteloua spp.) area and a shrubland (Atriplex canescens) area on and near the Sevilleta National Wildlife Reguge in central New Mexico, USA. Samples were obtained from beneath the canopies of plants (Yucca glauca in the grassland and A. canescens in the shrubland) and from open soils; they were collected three times during the spring and summer of a single growing season. Organic C, soil microbial biomass C, and basal respiration rates (collectively called the soil C triangle) were measured. We also calculated the microbial: organic C ratio and the metabolic quotient (ratio of respiration to microbial C) as measures of soil organic C stability and turnover. Although we had hypothesized that individual values of the soil C triangle would increase and that the ratios would decrease with time since grazing, differences in microbial parameters between sites located along the chronosequences were generally not significant. Grazing did not have a consistion effect on organic C, microbial C, and basal respiration in our chronosequences. The microbial: organic C ratio and the metabolic quotient generally increased with time since grazing on the shrubland chronosequence. The microbial: organic C ratio decreased with time since grazing and the metabolic quotient increased with time since grazing on the grassland chronosequence. The canopy effect was observed at all sites in nearly all parameters including organic C, microbial C, basal respiration, the microbial: organic C ratio, and the metabolic quotient which were predominantly higher in soils under the canopies of plants than in the open at all sites. Microbial biomass and activity did not increase during the experiment, even though the availability of moisture increased dramatically. The canopy effects were approximately equal on the shrubland and grassland sites. The microbial: organic C ratios and the metabolic quotients were generally higher in the shrubland soils than in the grassland soils.     

大气CO2浓度升高对土壤碳库的影响

土壤碳库是输入、输出土壤碳量的平衡:大气CO2浓度升高有可能通过生态系统中的各种生理过程来增加输入土壤的碳量,输入土壤碳量的增加使土壤成为一个潜在的碳汇,有可能缓解大气CO2浓度的升高;但另一方面输入土壤碳量的增加,为微生物的生长提供了能量,从而提高了微生物的活性,因此土壤呼吸增强,土壤碳输出增加.本文综述了大气CO2浓度升高对土壤碳输入、输出的影响以及目前研究中存在的争论,并提出有待进一步研究的领域和方向.