A major gene for resistance to white pine blister rust in Western white pine from the Western cascade range

ABSTRACT A dominant gene for resistance to white pine blister was indicated by Mendelian segregation in full-sib families of western white pine parent trees selected for phenotypic resistance in six heavily infected stands in the Western Cascades of Oregon and Washington. Seedlings were artificially inoculated three times between 1959 and 1964 and observed for development of stem infection. Segregation at this locus (Cr2) occurred in only two of the six parent populations sampled: one a natural stand, Champion Mine (CM), and the other a plantation of unknown seed origin. At CM, reduced penetrance of this gene was expressed by altered Mendelian ratios (mostly less-than-expected resistant phenotypes) in families of specific combinations of certain parents, indicating the presence of modifier genes with effects that ranged from mild to almost complete suppression of Cr2. Between 1968 and 1994, an apparent shift in virulence at CM caused all of the resistant selections to become infected and die. Recent inoculations of many of the same or related families from these parents, made from grafted ramets in a seed orchard, showed that Cr2 conditions a classical hypersensitive reaction (HR) in needle tissues, the primary infection courts. In the latter tests, seedlings were challenged with wild-type and four other sources of inoculum at and near CM that were also suspected of having wider virulence than wild type. No seedlings segregating for HR that were inoculated with wild type subsequently developed stem symptoms, but the other inocula induced both susceptible and HR needle spots on Cr2- genotypes, and many of these seedlings did develop stem infections. This implied that spore genotypes with specific virulence to Cr2 are carried in these inocula.     

Virulence gene distribution and dynamics of the white pine blister rust pathogen in Western north america

ABSTRACT We assayed the distribution and frequency of two genes of the blisterpathogen with specific virulence to major resistance genes in sugar pine and western white pine in inoculum from extensive parts of the hosts' ranges. The genes, vcr1 and vcr2, differentially neutralize the cognate resistance alleles Cr1 and Cr2 of the two respective hosts and are clearly marked by their interaction phenotypes. Basidiospores from each inoculum source were cast over Cr1 and Cr2 host genotypes simultaneously, and interaction phenotypes scored when developed. vcr1 was confined to sites with high concentrations of Cr1 (mostly plantations) where frequencies tended toward fixation. vcr2 showed a similar tendency, except high frequencies were occasionally observed from natural and planted stands of western white pine with very low frequencies of Cr2. Otherwise, no pattern was evident for either allele: frequencies were very erratic from site to site within short distances (<1 to 7 km) of each other and oscillated with high amplitudes at the same sites measured in consecutive years. Intense selection for virulence by Cr alleles occurs locally, but spread of vcr alleles over the landscape is mitigated by remarkably low gene flow. Absence of heterozygotes among single telia inoculum on Cr2 genotypes indicated cytoplasmic inheritance of vcr2, similar to vcr1(previously reported).     

Fine-level genetic structure of white pine blister rust populations

ABSTRACT The fine-level genetic structure of the white pine blister rust agent, Cronartium ribicola, was investigated by sampling multiple monokaryotic spermogonia directly on cankers in four eastern Canadian white pine (Pinus strobus) plantations and assessing genetic variability, using random amplified polymorphic DNA (RAPD) markers. Ninety-eight percent of the cankers surveyed contained a single DNA haplotype, suggesting spermogonia within cankers are the result of clonal reproduction. A single canker contained two haplotypes that were divided between the upper and lower parts of the canker, suggesting it represented two confluent cankers. In contrast, genotypic diversity was high among cankers. Thirty-seven haplotypes were found among forty-three cankers sampled, and an analysis of molecular variance indicated that 93% (P < 0.001) of the total genetic diversity was attributable to sampling of different cankers, strongly suggesting that multiple infections do not take place in the white pine blister rust pathosystem, i.e., a canker is the result of infection by a single genotype. This result is in contrast with the high level of genetic diversity previously reported among dikaryotic aecidia within cankers and is consistent with the hypothesis that variability in the aecidial stage is the result of outcrossing between resident spermogonia and alien spermatia. The genetic structure of the spermogonial stage, which is the vegetative extension of infection by basidiospores and, therefore, the indirect result of meiosis, was consistent with random mating; the observed genotypic diversity was not significantly different (P > 0.05) from the genotypic diversity expected under the assumption of panmixis. The results indicate that monokaryotic cankers can be genotyped by sampling a single unopened spermogonia per canker.     

Molecular epidemiology of white pine blister rust: recombination and spatial distribution

ABSTRACT Multilocus haplotypes (MLHs) were derived for the spermogonial (monokaryotic haploid) stage of Cronartium ribicola, the causal agent of white pine blister rust. Six random amplified polymorphic DNA loci and three single-strand conformational polymorphism markers were analyzed for 246 rust samples collected from two heavily infected white pine plantations. All cankers sampled were spatially located within the plantations. The hypothesis that spores are not locally disseminated was supported by the absence of any spatial clustering in the distribution of the MLHs. A large number of MLHs was found at both sites and the haplotypic diversity was close to the maximum (one) in both populations. All measures of recombination were not different from expectations under a scenario of sexual recombination. Genetic differentiation between the two sites was very low (theta = 0.023), yet it was significantly different from zero (P < 0.01). This analysis is in agreement with a scenario of extensive sexual recombination followed by some long-distance dispersal.     

Influence of host resistance on the genetic structure of the white pine blister rust fungus in the western United States

Cronartium ribicola, the causal agent of white pine blister rust, has been devastating to five-needled white pines in North America since its introduction nearly a century ago. However, dynamic and complex interactions occur among C. ribicola, five-needled white pines, and the environment. To examine potential evolutionary influences on genetic structure and diversity of C. ribicola in western United States, population genetic analyses of C. ribicola were conducted using amplified fragment length polymorphism (AFLP) molecular markers. The fungus was sampled at six sites. Collections for two of the six sites were from separate plantings of resistant-selected western white pine and sugar pine. Heterozygosity based on polymorphic loci among populations ranged from 0.28 to 0.40, with resistant-selected plantations at the extremes. Genetic differentiation was also highest between these two populations. Principal coordinates analysis and Bayesian assignment placed most isolates that are putative carriers of virulence to major-gene resistance into a discernable cluster, while other isolates showed no clustering by site or host species. These results indicate that C. ribicola in western North America is not genetically uniform, despite its presumed single site of introduction and relatively brief residence. Moreover, major-gene resistance appears to have imposed strong selection on the rust, resulting in reduced genetic diversity. In contrast, no evidence of selection was observed in C. ribicola from hosts that exhibit only multigenic resistance.     

Genetic interaction of the fusiform rust fungus with resistance gene fr1 in loblolly pine

ABSTRACT We propose a method for defining DNA markers linked to Cronartium quercuum f. sp. fusiforme avirulence (Avr) genes. However, before this method can be successfully employed, a spore competition study was needed to determine the genetic composition of single pycnial drops and multiple drops on single galls when using the standard inoculation procedure, whether virulent (avr1) basidiospores ever predispose some resistant (Fr1/fr1) trees to infection by avirulent (Avr1) basidiospores, and whether avr1 and Avr1 basidiospores equally infect susceptible (fr1/fr1) trees. Results of this study suggest that multiple infections within a single gall are common using the concentrated basidiospore system, resulting on average in >4 infection events per tree. Due to multiple infections within a single gall, an individual pycnial drop cannot be assumed to consist of spores from only a single haploid pycnium. Roughly 57% of the drops harvested were found to consist of more than one haploid genotype, most likely due to the physical mixing of spores from genetically different pycnia. Most importantly, although multiple infections do occur in the formation of a single gall, there is no evidence to suggest that the genetics of the proposed gene-for-gene interaction are compromised. Only avr1 basidiospores were observed to cause infection on Fr1/fr1 trees, whereas both avr1 and Avr1 basidiospores were observed to cause infection on fr1/fr1 trees, albeit not at equal frequencies.     

Lr46: a gene conferring slow-rusting resistance to leaf rust in wheat

ABSTRACT Wheat (Triticum aestivum) cultivar Pavon 76 carries slow-rusting resistance to leaf rust that has remained effective in Mexico since its release in 1976. 'Pavon 76' was crossed with two leaf rust-susceptible wheat cultivars, Jupateco 73S and Avocet S, and between 118 and 148 individual F(2) plant-derived F(3) and F(5) lines were evaluated for adult-plant leaf rust resistance at two field sites in Mexico during different seasons. Evaluation of F(1) plants and parents indicated that the slow-rusting resistance was partially dominant. Segregation in the F(3) and F(5) indicated that the resistance was based on two genes with additive effects. Monosomic analysis was carried out to determine the chromosomal locations of the resistance genes. For this purpose, two or three backcross-derived cytogenetic populations were developed by crossing 'Pavon 76' with a monosomic series of adult-plant leaf rust-susceptible cultivar Lal-bahadur. Evaluation of such BC(2)F(3) and BC(3)F(3) lines from 16 confirmed 'Lalbahadur' monosomics indicated that one slow-rusting gene was located in chromosome 1B of 'Pavon 76'. This gene, designated as Lr46, is the second named gene involved in slow-rusting resistance to leaf rust in wheat.     

Molecular marker mapping of leaf rust resistance gene lr46 and its association with stripe rust resistance gene yr29 in wheat

ABSTRACT Leaf and stripe rusts, caused by Puccinia triticina and P. striiformis, respectively, are globally important fungal diseases of wheat that cause significant annual yield losses. A gene that confers slow rusting resistance to leaf rust, designated as Lr46, has recently been located on wheat chromosome 1B. The objectives of our study were to establish the precise genomic location of gene Lr46 using molecular approaches and to determine if there was an association of this locus with adult plant resistance to stripe rust. A population of 146 F(5) and F(6) lines produced from the cross of susceptible 'Avocet S' with resistant 'Pavon 76' was developed and classified for leaf rust and stripe rust severity for three seasons. Using patterns of segregation for the two diseases, we estimated that at least two genes with additive effects conferred resistance to leaf rust and three to four genes conferred resistance to stripe rust. Bulked segregant analysis and linkage mapping using amplified fragment length polymorphisms with the 'Avocet' x 'Pavon 76' population, F(3) progeny lines of a single chromosome recombinant line population from the cross 'Lalbahadur' x 'Lalbahadur (Pavon 1B)', and the International Triticeae Mapping Initiative population established the genomic location of Lr46 at the distal end of the long arm of wheat chromosome 1B. A gene that is closely linked to Lr46 and confers moderate levels of adult plant resistance to stripe rust is identified and designated as Yr29.     

Genetics of resistance to wheat leaf rust, stem rust, and powdery mildew in Aegilops sharonensis

Aegilops sharonensis (Sharon goatgrass) is a wild relative of wheat and a rich source of genetic diversity for disease resistance. The objectives of this study were to determine the genetic basis of leaf rust, stem rust, and powdery mildew resistance in A. sharonensis and also the allelic relationships between genes controlling resistance to each disease. Progeny from crosses between resistant and susceptible accessions were evaluated for their disease reaction at the seedling and/or adult plant stage to determine the number and action of genes conferring resistance. Two different genes conferring resistance to leaf rust races THBJ and BBBB were identified in accessions 1644 and 603. For stem rust, the same single gene was found to confer resistance to race TTTT in accessions 1644 and 2229. Resistance to stem rust race TPMK was conferred by two genes in accessions 1644 and 603. A contingency test revealed no association between genes conferring resistance to leaf rust race THBJ and stem rust race TTTT or between genes conferring resistance to stem rust race TTTT and powdery mildew isolate UM06-01, indicating that the respective resistance genes are not linked. Three accessions (1644, 2229, and 1193) were found to carry a single gene for resistance to powdery mildew. Allelism tests revealed that the resistance gene in accession 1644 is different from the respective single genes present in either 2229 or 1193. The simple inheritance of leaf rust, stem rust, and powdery mildew resistance in A. sharonensis should simplify the transfer of resistance to wheat in wide crosses.     

Identification of a second Asian soybean rust resistance gene in Hyuuga soybean

ABSTRACT Asian soybean rust (ASR) is an economically significant disease caused by the fungus Phakopsora pachyrhizi. The soybean genes Rpp3 and Rpp?(Hyuuga) confer resistance to specific isolates of the pathogen. Both genes map to chromosome 6 (Gm06) (linkage group [LG] C2). We recently identified 12 additional soybean accessions that harbor ASR resistance mapping to Gm06, within 5 centimorgans of Rpp3 and Rpp?(Hyuuga). To further characterize genotypes with resistance on Gm06, we used a set of eight P. pachyrhizi isolates collected from geographically diverse areas to inoculate plants and evaluate them for differential phenotypic responses. Three isolates elicited different responses from soybean accessions PI 462312 (Ankur) (Rpp3) and PI 506764 (Hyuuga) (Rpp?[Hyuuga]). In all, 11 of the new accessions yielded responses identical to either PI 462312 or Hyuuga and 1 of the new accessions, PI 417089B (Kuro daizu), differed from all others. Additional screening of Hyuuga-derived recombinant inbred lines indicated that Hyuuga carries two resistance genes, one at the Rpp3 locus on Gm06 and a second, unlinked ASR resistance gene mapping to Gm03 (LG-N) near Rpp5. These findings reveal a natural case of gene pyramiding for ASR resistance in Hyuuga and underscore the importance of utilizing multiple isolates of P. pachyrhizi when screening for ASR resistance.     

山西小麦品种和育种材料抗锈病、白粉病鉴定

2011—2015年,采用人工接菌方法,对25个育种单位的601份小麦品种和育种材料进行了小麦条锈病、叶锈病和白粉病的抗病性鉴定,筛选出对小麦条锈病抗性表现良好的品种材料36份,对小麦叶锈病抗性表现良好的品种材料16份,对小麦白粉病抗性表现良好的品种材料12份。     

Increasing complexity of resistance in host populations through intermating to manage rust of pearl millet

ABSTRACT Pearl millet inbreds Tift 23DB, Tift 85DB, PS748BC, and Tift 89D(2) were used to develop three categories of host mixtures (physical mixtures, random-mated populations, and mixtures of two-way and three-way crosses) representing different levels of complexity of resistance through increased heterogeneity within populations and through stacking of resistance genes within the heterogeneous populations. The potential of these mixtures to reduce rust epidemics was evaluated in the field. Area under the disease progress curves (AUDPCs) of all physical mixtures were less than the mean of the components in 1995 and were less than the mean of the components for five of the six mixtures in 1997. In 1996, AUDPCs of the physical mixtures were consistently greater than the mean of their components. AUDPCs of the random-mated mixtures and the mixtures of crosses were consistently less than the mean of the components in 1996 and 1997, with reductions ranging from 12 to 71%. Dry matter yield (DMY) of physical mixtures relative to the mean DMY of the components was inconsistent, ranging from 18% less to 50% more than the mean of the components. The random-mated populations and the mixtures of crosses yielded 18 to 40% more DMY than the mean yield of the pure stands of their components.     

Characterization of the rust resistance gene present in the common bean cultivar Ouro Negro,the main rust resistance source used in Brazil

The main goal of the present work was to characterize the rust resistance (RR) gene present in the Mesoamerican common bean cultivar Ouro Negro, temporarily named Ur‐OuroNegro or Ur‐ON, which is the main RR source used in Brazil. The RR spectrum presented by cv. Ouro Negro was compared with those of other bean lines harbouring known RR genes when inoculated with nine selected races of Uromyces appendiculatus, the causal agent of bean rust. In addition, all bean lines were screened with molecular markers linked to Ur‐ON in order to identify additional evidence for the presence of alleles for this locus in the screened RR sources. The allelic relationships of Ur‐ON were tested with previously characterized RR genes from lines resistant to at least one race of the pathogen. Allelism tests were also carried out between cv. Ouro Negro and cvs CNC and CSW 643, important RR sources in Brazil harbouring unnamed RR genes. The results showed that the major dominant gene conditioning RR in cv. Ouro Negro is positioned at a locus distinct from those with which it was compared. It is proposed that this gene – or complex gene locus – is unique and be designated Ur‐14.     

Frequency and distribution of herbicide resistance in Raphanus raphanistrum populations randomly collected across the Western Australian wheatbelt

In 2003, a random survey was conducted across the Western Australian wheatbelt to establish the extent and frequency of herbicide resistance in Raphanus raphanistrum populations infesting crop fields. Five hundred cropping fields were visited, with 90 R. raphanistrum populations collected, representative of populations present in crop fields throughout the Western Australian wheatbelt. Collected populations were screened with four herbicides of various modes of action that are commonly used for the control of this weed. The majority of Western Australian R. raphanistrum populations were found to contain plants resistant to the acetolactate synthase (ALS)‐inhibiting herbicide chlorsulfuron (54%) and auxin analogue herbicide, 2,4‐D amine (60%). This survey also determined that over half (58%) of these populations were multiple resistant across at least two of the four herbicide modes of action used in the screening. Only 17% of R. raphanistrum populations have retained their initial status of susceptibility to all four herbicides. The distribution patterns of the herbicide‐resistant populations identified that there were higher frequencies of resistant and developing resistance populations occurring in the intensively cropped northern regions of the wheatbelt. These results clearly indicate that the reliance on herbicidal weed control in cropping systems based on reduced tillage and stubble retention will lead to higher frequencies of herbicide‐resistant weed populations. Therefore, within intensive crop production systems, there is a need to diversify weed management strategies and not rely entirely on too few herbicide control options.     

小麦品系ICA56抗条锈病鉴定及其抗性基因SSR标记

 小麦品系ICA56对条锈菌优势生理小种CYR30、CYR31和CYR32均表现免疫反应;遗传分析表明,ICA56携带一个显性抗条锈病基因。基因等位性测定显示,ICA56所含抗条锈病基因不同于已知抗锈基因Yr5、Yr10、Yr15和Yr26,暂将该基因定名为YrICA56。利用川麦28/ICA56的F₂群体及抗感亲本筛选到5对SSR引物WMC503、Xgwm261、Xgwm296、WMC112和Xgwm210与YrICA56连锁,遗传距离分别为16.6、10.4、7.0、4.5和14.1cM。根据Mapmaker3.0确定标记、YrICA56和着丝点在染色体上的顺序为:-WMC503-Xgwm261-Xgwm296-YrICA56-WMC112-Xgwm210-着丝点-。根据作图结果,将YrICA56定位在2DS。目前定位在2DS上的抗条锈病基因有Yr16和YrKat。Yr16为成株期抗性,YrKat属温敏抗性,而YrICA56在苗期和成株期对条锈病均表现免疫,由此推测YrICA56是一个新的抗条锈病基因。     

小麦材料PI31抗条锈性鉴定及其抗性基因SSR标记

 小麦材料PI31对我国当前流行的条锈菌小种条中30、31和32免疫;遗传分析表明,PI31携带一个显性抗条锈病基因。等位性测定显示,PI31所携带的抗条锈病基因与已知抗锈基因Yr5、Yr10和Yr15不等位。抗源系谱分析表明,该基因来源于叙利亚普通小麦品系叙18;故将此材料携带的抗条锈病基因暂定名为Yr-XU。利用分组分析(BSA)法,筛选到1个位于1 BS的SSR标记WM S11-193 bp片段与Yr-XU紧密连锁,将Yr-XU定位于小麦1BS上;对F₂分离群体142个单株分析结果表明,Yr-XU与WM S11-193 bp的遗传距离为2.1 cM,可将此标记用于小麦抗条锈病分子标记辅助育种。     

Genetic relationship between the adult plant resistance gene Lr12 and the complementary gene Lr31 for seedling resistance to leaf rust in common wheat

A resistant phenotype similar to that conferred in wheat by the complementary genes Lr27  +  Lr31 was produced in the progeny of intercrosses of cultivars carrying Lr27 and a line possessing Lr12 . This confirms that Lr12 is either completely linked with Lr31 or is the same gene. On the basis of these findings and that Lr31 is located on chromosome 4BS, it is concluded that Lr12 must also be located on 4BS. Adult-plant genetic tests confirm that the Australian wheat cultivar Timgalen carries Lr12 , and stocks with Lr12 alone were established from this cultivar.     

人工合成小麦新种质抗条锈性鉴定与Yr18基因检测

对97份来自CIMMYT的人工合成小麦新种质进行了主要农艺性状考察、Yr18分子检测和成株期田间抗锈性接种鉴定。结果表明:参鉴种质间主要农艺性状变异程度较大,尤其千粒重普遍偏高,有30份材料千粒重达50 g以上、占30.9%;利用csLV34标记检测到合成20和合成43携带Yr18,占2.1%;鉴选出成株期呈抗性反应的材料30份、占30.9%,高度慢条锈材料19份、占19.6%,其中合成2、5、14、60、75、76、78、82、83、84计10个合成种同时表现高抗和高度慢锈。这些大粒、抗条锈或慢条锈合成小麦种质的鉴定筛选,为选育小麦新品种提供了优异资源。     

Usefulness of gene pg10 as a source of stem rust resistance in oat breeding

ABSTRACT Infection types produced by Puccinia graminis f. sp. avenae on plants of Avena sativa with the stem rust resistance gene Pg10 are characterized by moderate-sized uredinia surrounded by an area of chlorosis and a larger variable zone of dark brown necrosis. This study was undertaken to assess the effectiveness of gene Pg10 as a source of resistance to stem rust and to determine the interactions of this gene with other common Pg genes. A derived Pg10 line was tested with 58 distinct pathotypes of P. graminis f. sp. avenae and was crossed to substituted single-gene lines carrying the resistance gene Pg1, Pg2, Pg3, Pg4, Pg8, Pg9, Pg13, Pg15, Pg16, or Pga. The Pg10 line showed moderate resistance to all 58 patho-types, and there was no indication of specificity in virulence by any isolate. Gene Pg10 was inherited independently of the other Pg genes and had a complementary effect on the expression of resistance by these genes. An effective level of resistance conferred by Pg10 was demonstrated in a field nursery artificially inoculated with P. graminis f. sp. avenae. It was concluded that Pg10 is a potentially useful source of stem rust resistance in oat breeding, with its main attributes being an apparent broad base of resistance, ease of combining with other Pg genes, and complementary effects on the expression of other Pg genes.     

来自波斯小麦Ps5的一对隐性抗叶锈病基因的染色体定位

为了筛选小麦抗叶锈病资源和发掘新的抗叶锈病基因,对由抗病波斯小麦Ps5与感病粗山羊草Ae38合成的双二倍体Am3进行了单体分析。将中国春单体和二体分别与Am3杂交,测定杂交F1植株的染色体条数以及F1、F2群体对叶锈病的抗/感病性。结果表明:在18℃条件下,Am3对小麦叶锈菌致病类型DHS/GD的抗病性由1对隐性抗病基因控制,该基因来自四倍体亲本波斯小麦Ps5,具有剂量效应,位于5A染色体上。