Determining long‐term changes in a skate assemblage with aggregated landings and limited species data

Sustainable fisheries management requires assessment of exploited populations and communities. Traditional fisheries stock assessment methods need species‐specific input data, which for skates have only recently become available in Europe. To overcome this limitation, a Bayesian multispecies biomass production model was developed. In addition to aggregated landings, input data are short time series with species‐specific information (landings and biomass indices). Applying the approach to four main skate species and a group of two skate species, all managed together in the Bay of Biscay (Northeast Atlantic), long‐term changes in the skate assemblage composition were identified. Since the 1990s, Leucoraja naevus became increasingly dominant, while the contributions of the other three species (Raja brachyura, Raja clavata and Raja montagui) declined. The abundance of the grouped Leucoraja fullonica and L. circularis has also strongly decreased, suggesting long‐term overexploitation. All species except this species group are expected to increase over the next decade under current harvest rates. Currently, the species considered here are managed under a single fishing quota making it unlikely that the group of the two most depleted species will recover soon. The multispecies modelling approach bears promise for other harvested assemblages for which only grouped harvest information is available for certain periods.     

The population dynamics of the longnose skate,Raja rhina,in the northeast Pacific Ocean

The longnose skate, Raja rhina, is the most commonly landed skate species in the northeast Pacific Ocean. It also dominates survey catches in the area. Existing knowledge on skate biology and fisheries suggests that large skate species with late sexual maturation, like the longnose skate, are extremely vulnerable to overfishing, and if overfished they are slow to recover. Historically, in the US Pacific Coast skates have not supported directed fisheries, but have been taken as bycatch in other commercially important fisheries. For the past 13 years, landed catches of skates in waters off Washington, Oregon and California have significantly increased. Using the Stock Synthesis 2 modeling framework, a population model for the longnose skate was developed to assess the current state of the stock and reconstruct its past dynamics. Model results indicate that the longnose skate spawning biomass has slowly declined since 1915; the current stock biomass is estimated as 66% of its unexploited level. Uncertainty in regards to fishery-dependent data and female maturity parameters was explored through sensitivity analyses. The model results indicate that it is important to conduct species-specific identification in the fishery and monitor discard of longnose skate to improve the accuracy of fishery catch data and make assessment conclusions more robust.     

Taxonomic confusion and market mislabelling of threatened skates: important consequences for their conservation status

• 1. The iconic European common skate (Dipturus batis) has been described as the first clear case of a fish species brought to the brink of extinction by commercial fishing. Its listing was upgraded to Critically Endangered on the 2006 IUCN Red List of Threatened Species. According to FAO fishery statistics, France is responsible for 60.2% of the 502 tonnes reported as ‘D. batis’ in the 2005 world landings.
• 2. Noticeable phenotypic differences within the species and inconsistencies in published data on its sexual maturation required careful re‐examination of its taxonomy. Morphology, genetics, and life history reveal that two distinct species have been erroneously confused since the 1920s under the single scientific name D. batis. Here it is argued that they should be resurrected as two valid species. The common skate D. batis species‐complex is split into two nominal species, the blue skate (provisionally called D. cf. flossada) and the flapper skate (D. cf. intermedia) with maximum lengths of 143.2 cm and 228.8 cm respectively.
• 3. This taxonomic confusion puts into question all previously accumulated data based on D. batis. Its endangered status highlights the need for an extensive reassessment of population collapses with accurately identified species. In 2006/2007 an extensive survey (4110 skates, 14.081 tonnes by weight) was conducted in the main French ports of the D. batis species‐complex and relatives (D. oxyrinchus, D. nidarosiensis and Rostroraja alba) that are mixed together in landings under the names ‘D. batis’ and ‘D. oxyrinchus’.
• 4. The survey reveals that official fishery statistics mask species‐specific declines, due to the mislabelling of five species under only two landing names. Trends in landings since the 1960s and the life history of these species suggest a dramatic decline and collapse of the spawning stock, preventing the recovery of relict populations.
• 5. The risk of extinction of these depleted species may be higher than previously assessed and might be unavoidable without immediate and incisive conservation action. Copyright © 2009 John Wiley & Sons, Ltd.

     

Evaluation of a spatially sex‐specific assessment method incorporating a habitat preference model for blue marlin (Makaira nigricans) in the Pacific Ocean

Blue marlin, widely distributed throughout the Pacific Ocean, are sexually dimorphic, have certain preferred habitats, and migrate seasonally. These characteristics have been ignored in previous stock assessment models. A population dynamics model that includes spatial structure, and sex and age structure was therefore constructed and fitted to fisheries data for blue marlin, along with information on the relative density of the population over space derived from a habitat preference model that uses the oceanographic and biological variables sea‐surface temperature, mixed layer depth, sea‐surface height anomaly, and chlorophyll‐a concentration. Monte Carlo simulation was then used to examine the estimation performance of the stock assessment method. Estimates of management‐related quantities including current spawning stock biomass are substantially biased when the assessment method ignores seasonal movement and sexual dimorphism. We also found that (i) uncertainty about the relationship between catch rate and abundance influences estimation performance to a larger extent than uncertainty in catches, (ii) the outcomes of the assessment are sensitive to the values assumed for natural mortality and stock‐recruitment steepness, and (iii) the ratio of current spawning stock biomass to that at pre‐exploitation equilibrium appears to be the most robust among the quantities considered. We conclude that assessment methods for blue marlin in the Pacific Ocean need to take account of seasonal migration and sex structure to improve stock assessments.     

A simple method for estimating MSY from catch and resilience

The Law of the Sea requires that fish stocks are maintained at levels that can produce the maximum sustainable yield (MSY). However, for most fish stocks, no estimates of MSY are currently available. Here, we present a new method for estimating MSY from catch data, resilience of the respective species, and simple assumptions about relative stock sizes at the first and final year of the catch data time series. We compare our results with 146 MSY estimates derived from full stock assessments and find excellent agreement. We present principles for fisheries management of data‐poor stocks, based only on information about catches and MSY.     

Interannual variation in pelagic juvenile rockfish (Sebastes spp.) abundance – going with the flow

We report results from 28 yr of a midwater trawl survey of pelagic juvenile rockfish (Sebastes spp.) conducted off the central California coast. The fishery‐independent survey is designed to provide pre‐recruit indices of abundance for use in groundfish stock assessments. Standardized catch rate time series for 10 species were developed from delta‐generalized linear models that include main effects for year, station, and calendar date. Results show that interannual fluctuations of all 10 species are strongly coherent but highly variable, demonstrating both high‐ and low‐frequency components. A similarly coherent result is observed in the size composition of fish, with large fish associated with elevated catch rates. In contrast, spatial and seasonal patterns of abundance show greater species‐specific differences. A comparison of the shared common trend in pelagic juvenile rockfish abundance, derived from principal components analysis, with recruitments from five rockfish stock assessments shows that the time series are significantly correlated. An examination of oceanographic factors associated with year‐to‐year variability indicates that a signature of upwelled water at the time of the survey is only weakly related to abundance. Likewise, basin‐scale indices (the Multivariate El Niño‐Southern Oscillation Index, the Pacific Decadal Oscillation, the North Pacific Gyre Oscillation, and the Northern Oscillation Index) are poorly correlated with abundance. In contrast, sea level anomalies in the months preceding the survey are well correlated with reproductive success. In particular, equatorward anomalies in the alongshore flow field following the spawning season are associated with elevated survival and poleward anomalies with poor survival.     

Ocean scale hypoxia‐based habitat compression of Atlantic istiophorid billfishes

Oxygen minimum zones (OMZs) below near‐surface optimums in the eastern tropical seas are among the largest contiguous areas of naturally occurring hypoxia in the world oceans, and are predicted to expand and shoal with global warming. In the eastern tropical Pacific (ETP), the surface mixed layer is defined by a shallow thermocline above a barrier of cold hypoxic water, where dissolved oxygen levels are ≤3.5 mL L^?1. This thermocline (～25–50 m) constitutes a lower hypoxic habitat boundary for high oxygen demand tropical pelagic billfish and tunas (i.e., habitat compression). To evaluate similar oceanographic conditions found in the eastern tropical Atlantic (ETA), we compared vertical habitat use of 32 sailfish (Istiophorus platypterus) and 47 blue marlin (Makaira nigricans) monitored with pop‐up satellite archival tags in the ETA and western North Atlantic (WNA). Both species spent significantly greater proportions of their time in near‐surface waters when inside the ETA than when in the WNA. We contend that the near‐surface density of billfish and tunas increases as a consequence of the ETA OMZ, therefore increasing their vulnerability to overexploitation by surface gears. Because the ETA OMZ encompasses nearly all Atlantic equatorial waters, the potential impacts of overexploitation are a concern. Considering the obvious differences in catchability inside and outside the compression zones, it seems essential to standardize these catch rates separately to minimize inaccuracies in stock assessments for these species. This is especially true in light of global warming, which will likely exacerbate future compression impacts.     

Reducing bycatch impacts in recreational fisheries: Case study examining terminal tackle in the multispecies Gulf of Maine groundfish fishery

Terminal tackle regulations can be a valuable tool for fisheries management, especially in multispecies fisheries where bycatch and discards are common issues. In the Gulf of Maine, recreational anglers frequently discard critically depleted Atlantic cod Gadus morhua L. as bycatch when targeting the abundant haddock Melanogrammus aeglefinus (L.) stock. The present study investigated species catch composition, catch rates and animal welfare across various terminal tackle setups, and aspects of capture and handling with the goal of reducing bycatch and discard mortality. Overall, 2558 cod and 4266 haddock were captured with six terminal tackle setups in the western Gulf of Maine from April to October 2018. Along with angler experience and capture depth, lure type primarily influenced species catch composition and catch-per-unit-effort; hook types additionally influenced hook-removal times and physical injuries to fish. Results indicate that using baited hooks can both promote haddock catch and reduce cod bycatch, with specific hook types promoting increased survival.     

Estimating fisheries reference points from catch and resilience

This study presents a Monte Carlo method (CMSY) for estimating fisheries reference points from catch, resilience and qualitative stock status information on data‐limited stocks. It also presents a Bayesian state‐space implementation of the Schaefer production model (BSM), fitted to catch and biomass or catch‐per‐unit‐of‐effort (CPUE) data. Special emphasis was given to derive informative priors for productivity, unexploited stock size, catchability and biomass from population dynamics theory. Both models gave good predictions of the maximum intrinsic rate of population increase r, unexploited stock size k and maximum sustainable yield MSY when validated against simulated data with known parameter values. CMSY provided, in addition, reasonable predictions of relative biomass and exploitation rate. Both models were evaluated against 128 real stocks, where estimates of biomass were available from full stock assessments. BSM estimates of r, k and MSY were used as benchmarks for the respective CMSY estimates and were not significantly different in 76% of the stocks. A similar test against 28 data‐limited stocks, where CPUE instead of biomass was available, showed that BSM and CMSY estimates of r, k and MSY were not significantly different in 89% of the stocks. Both CMSY and BSM combine the production model with a simple stock–recruitment model, accounting for reduced recruitment at severely depleted stock sizes.     

What makes fish vulnerable to capture by hooks? A conceptual framework and a review of key determinants

Considerable time and money are expended in the pursuit of catching fish with hooks (e.g., handlining, angling, longlining, trolling, drumlining) across the recreational, commercial and subsistence fishing sectors. The fish and other aquatic organisms (e.g., squid) that are captured are not a random sample of the population because external (e.g., turbidity) and underlying internal variables (e.g., morphology) contribute to variation in vulnerability to hooks. Vulnerability is the probability of capture for any given fish in a given location at a given time and mechanistically explains the population‐level catchability coefficient, which is a fundamental and usually time‐varying (i.e., dynamic) variable in fisheries science and stock assessment. The mechanistic drivers of individual vulnerability to capture are thus of interest to fishers by affecting catch rates, but are also of considerable importance to fisheries managers whenever hook‐and‐line‐generated data contribute to stock assessments. In this paper, individual vulnerability to hooks is conceptualized as a dynamic state, in which individual fish switch between vulnerable and invulnerable states as a function of three interdependent key processes: an individual fish's internal state, its encounter with the gear, and the characteristics of the encountered gear. We develop a new conceptual framework of “vulnerability,” summarize the major drivers of fish vulnerability, and conclude that fish vulnerability involves complex processes. To understand vulnerability, a shift to interdisciplinary research and the integration of ecophysiology, fish ecology, fisheries ecology and human movement ecology, facilitated by new technological developments, is required.     

Change in habitat associations and geographic distribution of thorny skate (Amblyraja radiata) in the southern Gulf of St Lawrence: density‐dependent habitat selection or response to environmental change?

We describe changes in the habitat associations and geographic distribution of thorny skate during their feeding season in the southern Gulf of St Lawrence, based on 32 yr of monitoring by a bottom‐trawl survey. In the 1990s, geographic range contracted sharply and distribution shifted into a narrow band of warm deep waters. These changes appeared to reflect altered habitat selection by individual skates, rather than local depletion of the skates that had habitually occupied the vacated areas or a change in the timing of seasonal migrations. Changes in skate distribution coincided with a decline in skate biomass and a cooling of bottom waters. The contraction in the geographic range of skates appeared to be a density‐dependent response, more closely linked to the decline in skate abundance than to the change in environmental conditions. The cause of the shift in habitat associations is less certain. An index of the distribution shift was more strongly correlated with skate biomass than with an index of temperature conditions, and the change in temperature associations is in the direction predicted by density‐dependent bioenergetic considerations. However, the shift into deeper waters is into a depth zone where skate condition is relatively low, contrary to the expectation that fish should be concentrated in optimal habitat at low population size. On the other hand, while the shift into warm deep waters coincided with a cooling of waters at intermediate depths, distribution failed to shift back to the earlier pattern as these waters warmed in the late 1990s.     

Integrating recreational fisheries data into stock assessment: implications for model performance and subsequent harvest strategies

Understanding the impacts of recreational fishing on commercially fished stocks is becoming increasingly relevant for fisheries managers. However, data from recreational fisheries are not commonly included in stock assessments of commercially fished stocks. Simulation models of two assessment methods employed in Australia's Commonwealth fisheries were used to explore how recreational fishery data can be included, and the likely consequences for management. In a data‐poor management strategy for blue eye trevalla, Hyperoglyphe antarctica (Carmichael), temporal trends in recreational catch most affected management outcomes. In a data‐rich age‐structured stock assessment for striped marlin, Kajikia audax (Philippi), estimates of stock status were biased when recreational catches were large or when the recreational fishery targeted different size classes than the commercial fishery and these data were not integrated into the assessment. Including data from recreational fishing can change perceptions of stock status and impact recommendations for harvest strategies and management action. An understanding of recreational fishery dynamics should be prioritised for some species.     

Inter‐ and intra‐specific interactions affecting crustacean trap fisheries—Implications for management

The UK coastal trap fisheries target two key species, European lobster Homarus gammarus (L.) and brown crab Cancer pagurus L. Their stock status is assessed periodically using size‐based, yield‐per‐recruit analysis. Fishery trends are described using landings and, where available, effort data to estimate catch per unit of effort (CPUE), nominally proportional to abundance. Despite being caught together, assessments assume that concurrent capture of these species does not distort their individual CPUE estimates. Here, an in situ experiment tested impacts of inter‐specific and intra‐specific interactions by pre‐loading baited traps with different species and observing subsequent catches. Pre‐loaded European lobster significantly reduced brown crab catches, whereas, other species produced no such effects. The findings highlight the likely inconsistency of using CPUE as an index of abundance if landings data originate from a mixed‐species fishery in which species interactions and targeting behaviour of fishers are unknown or un‐quantified.     

Empirical move‐on rules to inform fishing strategies: a New England case study

Increasingly, fisheries are being managed under catch quotas that are often further allocated to specific permit holders or sectors. At the same time, serious consideration is being given to the effects of discards on the health of target and non‐target species. Some quota systems have incorporated discard reduction as an objective by counting discards (including unmarketable fish) against the overall quota. The potential effect of the introduction of a quota system that includes accountability for discards on the fishing strategies employed by fishermen is enormous. This is particularly true for multispecies fisheries where healthy and depleted stocks co‐exist; resulting in a trip's catch being applied to very large and very small stock quotas simultaneously. Under such a scenario, fishermen have a strong incentive to minimize (i) catch of low‐quota or ‘choke’ stocks, (ii) regulatory discards due to minimum size limits and (iii) catch partially consumed by predators. ‘Move‐on’ rules (i.e. event‐triggered, targeted, temporary closure of part of a fishery when a catch or bycatch threshold is reached) have been employed in a variety of fisheries. However, their efficacy has been limited by a lack of empirical analyses underpinning the rules. Here, we examine the utility of spatiotemporal autocorrelation analyses to inform ‘move‐on’ rules to assist a sector of the New England Multispecies Fishery to reduce discards and maximize profits. We find the use of empirical move‐on rules could reduce catch of juvenile and choke stocks between 27 and 33%, and depredation events between 41 and 54%.     

Fluctuation in stock properties of north-east Arctic cod related to long-term environmental changes

From a historic perspective, the north‐east Arctic cod stock, which is found in the Barents Sea–Svalbard region, has been the most productive gadoid stock in the Atlantic. Variation in catch has always been large, but during the last 10–15 years catch and stock abundance have reached the lowest level on record. Three major causes of variation have been discussed: (i) stock reduction through exploitation; (ii) environmental influences on recruitment; and (iii) species interaction effects on maturation, growth and mortality. In addition, interactions among these three sources might be important. The influence of each specific factor is difficult to evaluate from incidental observations and short‐term time series. In this respect, the time series on catches and on biological and environmental information of this stock, which partly extend back to the 19th century, occupy a unique position in comparison to data on most other stocks. In this paper, fluctuations in catch and stock abundance are compared with changes in recruitment, size/age and growth. This information is discussed in view of historic variation in ecology and environment. The stock has been under particularly high exploitation pressure since the mid‐1970s. Further, large changes in growth rates and poor recruitment to the commercially exploited stock are characteristic of late 1980s and throughout the 1990s. The analysis shows that substantial long‐term variation might underlie short‐term variability, and more importantly, that long‐term changes roughly coincide with similar fluctuations in the environment. Such factors might substantially affect the relationship between spawning stock and recruitment, which is also apparent from the difference in conclusions reached by various published studies. Consequently, it is suggested that using a steady‐state perspective for the population dynamics may lead to mismanagement and to a reduction of the long‐term yield from this stock.     

Fisheries resource management of the daggertooth pike conger,Muraenesox cinereus,using existing limited datasets in the western Seto Inland Sea,Japan

The daggertooth pike conger, Muraenesox cinereus (Forsskål), has become an important fish resource in the western Seto Inland Sea, Japan, since the 1990s. However, introducing sustainable fisheries resource management for this species is difficult in this region because stock assessments have not been performed, and official fisheries statistics for this stock were discontinued after 2007. This study used existing limited data sets to compile the first report for fisheries resource management for this M. cinereus stock. Yield‐per‐recruit analyses showed that increasing fishing pressure above current levels would provide only a minimal increase in expected catch levels. Hence, the current harvest level is considered to represent the upper limit of fishing pressure. Age composition in a given year could potentially be used to forecast landing abundance for the following 2 years. This study provides a basis for establishing effective fisheries resource management strategies for M. cinereus.     

A centurial development of the North Sea fish megafauna as reflected by the historical Swedish longlining fisheries

Historically, to compensate for declining catches, fishers have usually shifted from species characterized by high catch rate onto less easily caught species or have moved into new fishing grounds. Such shifts are poorly documented for areas with a long history of exploitation (i.e. North Sea) as they occurred long time before the start of the regular assessments of the marine resources. The Swedish longline fisheries in the Kattegat‐Skagerrak and North Sea have a long history that spans over several centuries. These fisheries have historically targeted large demersal predator fish as ling (Molva molva), cod (Gadus morhua), Atlantic halibut (Hippoglossus hippoglossus) and skates (mainly Dipturus spp.). In this study, data from the Swedish longline fisheries from 1859 to 1960 have been collated. The data show that the geographical expansion of the fishery was extensive. At the turn of the 20th century, offshore longlining became concentrated north and west of the Shetlands and Hebrides, and after the WWII, the fishery expanded to Iceland and Rockall. In the offshore fishery, CPUE for the main target species, ling, remained stable, whereas for the other species, with the exception of tusk (Brosme brosme), CPUE showed a dramatic decline over time. In contrast, in the coastal longlining fishery, severe declines were revealed for all major target species except cod. We argue that the constant search for new fishing grounds in the Northeast Atlantic reflects a dwindling resource, where the fishermen kept the catch rates of ling high by travelling to more and more distant fishing grounds.     

Age and growth of the Critically Endangered flapper skate,Dipturus intermedius

1. Knowledge of vital data such as growth and age at maturity is necessary to develop effective management strategies for endangered species. The Critically Endangered flapper skate (Dipturus intermedius) is the largest skate in the North Atlantic and growth information, necessary to assess key life-history traits, populations’ growth rates and anticipate their response to management measures, is still lacking.
2. While classical age estimation methods used in fish generally require the analysis of calcified structures, destructive methods are incompatible with conservation objectives for this species. Taking advantage of the high recreational value of the flapper skate, this study uses citizen-science data originating from photo-identification of trophy pictures and tag–recapture data supported by anglers to estimate growth in this Critically Endangered species. Using the growth increments measured between recapture events, an individual-based Von Bertalanffy growth model was fitted to the data using Bayesian inference.
3. The results confirm that the flapper skate is a long-lived species with ages estimated as >40 years for the largest individuals captured. Despite this longevity, the model reveals a relatively fast initial growth but relatively late ages at maturity and significant sex-related differences in both growth rate and maximum size.
4. These results suggest that population growth rate, and therefore recovery, might be much slower than previously reported. By using citizen science this study provides the necessary information to begin understanding population dynamics and monitor the recovery of an iconic Critically Endangered species.

     

Spatio‐temporal management of fisheries to reduce by‐catch and increase fishing selectivity

Time/area closures have been widely used in fisheries management to prevent overfishing and the destruction of marine biodiversity. To a lesser degree, such spatio‐temporal management measures have been used to reduce by‐catch of finfish or protected species. However, as ecosystem‐based management approaches are employed and more fisheries are managed through multispecies, multiobjective models, the management of by‐catch will likely become increasingly important. The elimination of by‐catch has become a primary goal of the fishing policies of many countries. It is particularly relevant in the United States, as the deadline for setting annual catch limits (ACLs) in all fisheries passes in 2011. This will result in a dramatic expansion of the number of catch and by‐catch quotas. Such catch measures may result in the early closure of otherwise sustainable fisheries when by‐catch quotas are exceeded. To prevent such closures and the consequent economic hardship to fishers and the economy, it is imperative that managers be given the tools necessary to reduce by‐catch and improve fishing selectivity. Targeted spatio‐temporal fishery closures are one solution open to managers. Here, we examine how the spatio‐temporal and oceanographic characteristics of by‐catch may be used by managers to design fishery closures, and place these methods within a decision tree to assist managers to identify appropriate management measures. We argue that the current movement towards marine spatial planning (MSP) presents an important impetus to examine how we manage fisheries spatially, and we offer a first step towards the objective participation of fisheries in the MSP process.     

Effort rights‐based management

Effort rights‐based fisheries management (RBM) is less widely used than catch rights, whether for groups or individuals. Because RBM on catch or effort necessarily requires a total allowable catch (TAC) or total allowable effort (TAE), RBM is discussed in conjunction with issues in assessing fish populations and providing TACs or TAEs. Both approaches have advantages and disadvantages, and there are trade‐offs between the two approaches. In a narrow economic sense, catch rights are superior because of the type of incentives created, but once the costs of research to improve stock assessments and the associated risks of determining the TAC and costs of monitoring, control, surveillance and enforcement are taken into consideration, the choice between catch or effort RBM becomes more complex and less clear. The results will be case specific. Hybrid systems based on both catch and effort are increasingly employed to manage marine fisheries to capture the advantages of both approaches. In hybrid systems, catch or effort RBM dominates and controls on the other supplements. RBM using either catch or effort by itself addresses only the target species stock externality and not the remaining externalities associated with by‐catch and the ecosystem.