Drying-rewetting rather than sieving stimulates soil respiration

Dear Editor,Soils contain the largest carbon(C) pool in terrestrial ecosystems.Even a small change in soil C pool may significantly influence atmospheric carbon dioxide(CO₂) concentration.Thus,it is critical to accurately assess the response of soil C pool to global change.Soil incubation is a frequently used method to assess soil C decomposition rate because it allows environmental variables to be under control(Unger et al.,2010;Shi and Marschner,2014).However,pre-treatments during soil sampling and processing,such as sieving and drying-rewetting,inevitably bring physical disturbances which may affect soil respiration rate(Franzluebbers,1999;Thomson et al.,2010;Curtin et al.,2014).     

Does antimony affect microbial respiration in Mediterranean soils? A microcosm experiment

The aim of this study was to determine the effects of antimony on soil microbial respiration. Two Mediterranean calcareous soils were sampled: a contaminated soil close to an abandoned lead and silver smelter and a soil far from the pollution source and considered not to be contaminated. Two forms of antimony, antimony trioxide (Sb₂O₃) and potassium antimonyl tartrate trihydrate (C₈H₄K₂O₁₂Sb₁₂·3H₂O), were tested at three concentrations (50, 500 and 5000 ppm) in controlled conditions under short- (3 days) and medium- (3 months) term incubation. Modifications in the substrate-induced respiration (SIR) were assessed by gas chromatography respirometric measurements. Results clearly showed that SIR was immediately and significantly more affected by Sb input in a non-contaminated soil than in a long-term contaminated soil, especially since the concentration was high and Sb was added to a more soluble and available form (tartrate instead of mineral oxide).     

Does variability in litter quality determine soil microbial respiration in an Amazonian rainforest?

Tree species-rich tropical rainforests are characterized by a highly variable quality of leaf litter input to the soil at small spatial scales. This diverse plant litter is a major source of energy and nutrients for soil microorganisms, particularly in rainforests developed on old and nutrient-impoverished soils. Here we tested the hypothesis that the variability in leaf litter quality produced by a highly diverse tree community determines the spatial variability of the microbial respiration process in the underlying soil. We analyzed a total of 225 litter-soil pairs from an undisturbed Amazonian rainforest in French Guiana using a hierarchical sampling design. The microbial respiration process was assessed using substrate-induced respiration (SIR) and compared to a wide range of quality parameters of the associated litter layer (litter nutrients, carbon forms, stoichiometry, litter mass and pH). The results show that the variability of both litter quality and SIR rates was more important at large than at small scales. SIR rates varied between 1.1 and 4.0 μg g⁻¹ h⁻¹ and were significantly correlated with litter layer quality (up to 50% of the variability explained by the best mixed linear model). Total litter P content was the individual most important factor explaining the observed spatial variation in soil SIR, with higher rates associated to high litter P. SIR rates also correlated positively with total litter N content and with increasing proportions of labile C compounds. However, contrary to our expectation, SIR rates were not related to litter stoichiometry. These data suggest that in the studied Amazonian rainforest, tree canopy composition is an important driver of the microbial respiration process via leaf litter fall, resulting in potentially strong plant-soil feedbacks.     

Whole fruit mineral element content and respiration rates of harvested ‘delicious’ apples

Whole fruit mineral element analysis is used commercially in Great Britain to predict postharvest apple fruit quality and storage life. Similar commercial programs are under development in Washington State; however, mineral element concentration guidelines are not available for important Washington‐grown cultivars. The current study used fruit respiration rate as a criterion for evaluating optimal whole fruit mineral element concentration. ‘Wellspur Delicious’ apple trees (Malus domestica Borkh.) were treated with four biweekly sprays of D, 4.1 and 13.5 kg CaCl₂/ha. Fruit of uniform diameter (7.65 to 8.05 cm) were harvested. Four intact single‐fruit samples per treatment were placed into individual respiration chambers maintained at 20°C. Humidified CO₂‐free air was continuously pumped into the chambers. Evolved C0₂ was trapped in NaOH and analyzed by titration. Evolution of C0₂ was measured for 38 days after which the fruits were analyzed for whole fruit Ca, N, Mg, P and K concentrations. The C0₂ evolution data was analyzed by linear regression to generate average respiration rates. The preharvest CaCl₂ spray treatments did not influence whole fruit Ca concentrations or respiration rates. The respiration rates were not influenced by mineral element concentration or selected ratios of concentrations. The Ca concentrations in the fruit (> 300 mg/kg dry mass) appear to have been sufficiently high to produce uniform low respiration rates and to mask possible influences of the other elements. The results suggest that whole fruit mineral element analysis may not be a sensitive indicator of average respiration rates of ‘Delicious’ apples during ripening.     

Soil microbial biomass and its activity estimated by kinetic respiration analysis – Statistical guidelines

The use of kinetic respiration analysis to determine soil microbial biomass its active part and maximum specific growth rate has recently increased. With this method, the increase in soil respiration rate initiated by application of carbon growth substrate, e.g. glucose, and mineral nutrients is used to estimate parameters describing microbial growth in soil. This study refines the method by developing statistical guidelines for the data analysis and processing. The kinetic respiration analysis assumes that microbial growth is not limited by substrate and energy. That is why it is critically important to identify the time period corresponding to the unlimited growth. In this work, we studied how the unlimited growth phase can be identified in less subjective ways by examining 121 datasets of respiration time series of 44 different soil samples taken from field plots. Deflection of the respiratory curve from the exponential pattern indicates growth limitation. Subjective selection of the part of respiratory curve which fits to the exponential pattern resulted in a 30% bias in specific microbial growth rates. We propose rules that are based on inspecting the patterns in a series of plots of residuals of fitted respiration rate. By comparing those rules with a set of statistical criteria we find that the weighted-coefficient of determination (r²) can be used to objectively constrain the unlimited growth phase in those cases where double-limitation does not occur. Furthermore, we discuss how the uncertainty of estimated microbial parameters is influenced by a) measurement uncertainty, b) biased measurement at the beginning of the experiment, and c) the number and timing of respiration measurements. We recommend checking plots of fits and residuals as well as reporting uncertainty bounds together with the estimated microbial parameters. A free statistical package is provided to easily deal with those aspects.     

Microbial respiration and substrate weight loss—I: A general model of the influences of abiotic variables

A general model of the influences of abiotic variables on microbial respiration and substrate weight loss is presented. The model, a complex hypothesis relating microbial respiration to temperature. moisture, O₂ and substrate, “explains” 71–96% of the variation in aerobic respiration rates measured from a variety of natural substrates. The model can project seasonal patterns of weight loss and thus permits evaluation of laboratory respirometry against field measures using litter bags. Using data from several countries simulated losses due to microbial respiration are 70–90% of the measured litter bag loss.     

Microbial respiration and substrate weight loss—II: A model of the influences of chemical composition

Three models of the influences of chemical composition on microbial respiration and substrate weight loss are presented. The three approaches represent different means of incorporating influences of temperature and moisture upon chemical-specific respiration rates. Although influences of temperature and moisture dominate microbial respiration patterns, chemical-specific respiration rates do exist with ethanol soluble substrate components respiring about 5–10 × as rapidly as nonethanol soluble components (depending upon temperature). Simulation models are utilized to project and relate the laboratory measures of microbial respiration to field measures of substrate weight loss. Utilizing chemical-specific respiration rates, simulated rates of weight loss from ethanol soluble and non-ethanol soluble substrate components are 48% and 12% per yr. Measured rates are 49% and 11%. After the initial period of relatively high leaching, changes in substrate weight and chemical composition result largely from changing microbial respiration rates which are chemical-specific and independently influenced by temperature and moisture.     

On the 'temperature sensitivity' of soil respiration: Can we use the immeasurable to predict the unknown?

The temperature dependence of soil respiration (R_S) is widely used as a key characteristic of soils or organic matter fractions within soils, and in the context of global climatic change is often applied to infer likely responses of R_S to warmer future conditions. However, the way in which these temperature dependencies are calculated, interpreted and implemented in ecosystem models requires careful consideration of possible artefacts and assumptions. We argue that more conceptual clarity in the reported relationships is needed to obtain meaningful meta-analyses and better constrained parameters informing ecosystem models. Our critical assessment of common methodologies shows that it is impossible to measure actual temperature response of R_S, and that a range of confounding effects creates the observed apparent temperature relations reported in the literature. Thus, any measureable temperature response function will likely fail to predict effects of climate change on R_s. For improving our understanding of R_S in changing environments we need a better integration of the relationships between substrate supply and the soil biota, and of their long-term responses to changes in abiotic soil conditions. This is best achieved by experiments combining isotopic techniques and ecosystem manipulations, which allow a disentangling of abiotic and biotic factors underlying the temperature response of soil CO₂ efflux.     

Relationships between C respiration and fine particulate organic matter (250–50 μm) weight

Soil organic matter (SOM) status was evaluated using the relationships between two independent soil variables, i.e., C respiration and the weight of particulate organic matter POM (4000–50 μm) under different vegetation covers and ecosystems of central Belgium. A positive relationship was found between the weight of the finest POM fraction, i.e., fine POM fraction (250–50 μm) and C respiration after 1 week (R² = 0.34, n = 120, p < 0.0001) and 2 weeks (R² = 0.28, n = 120, p < 0.0001) of incubation. Therefore, we assumed that the C respiration and the weight of fine POM might be used to evaluate the SOM status under different vegetation covers and ecosystems.     

Do climate warming and plant species richness affect potential nitrification, basal respiration and ammonia-oxidizing bacteria in experimental grasslands?

Ammonia-oxidizing bacteria (AOB) are key organisms in the N cycle, as they control the first, rate-limiting step of the nitrification process. The question whether current environmental disturbances, such as climate warming and plant diversity losses, select for a particular community structure of AOB and/or influence their activity remains open. The purpose of this research was to study the impact of a 3 °C warming and of plant species richness (S) on microbial activity and diversity in synthesized grasslands, with emphasis on the nitrification process and on the diversity (community structure and richness) of ammonia-oxidizing bacteria (AOB). We measured soil chemical characteristics, basal respiration, potential nitrification and AOB diversity in soils under increasing plant species richness (S = 1, S = 3, S = 9) at ambient and (ambient +3 °C) temperature. Species were drawn from a 9-species pool, belonging to three functional groups: forbs, legumes and grasses. Mixtures comprised species from each of the three functional groups. Warming did not affect AOB diversity and increased potential nitrification at S = 3 only. Under warmed conditions, higher plant species richness resulted in increased potential nitrification rates. AOB richness increased with plant species richness. AOB community structure of monocultures under legumes differed from those under forbs and grasses. Clustering analysis revealed that AOB community structure under legume monocultures and mixtures of three and nine species grouped together. These results indicate that functional group identity rather than plant species richness influenced AOB community structure, especially through the presence of legumes. No clear relationship emerged between AOB richness and potential nitrification whatever plant species richness and temperature treatment. Our findings show a link between aboveground and belowground diversity, namely plant species richness, AOB richness and community structure. AOB richness was not related to soil processes, supporting the idea that increased diversity does not necessarily lead to increased rates of ecosystem processes.     

Quantifying the contribution of soil organic matter turnover to forest soil respiration, using natural abundance δC

Quantifying the loss of soil carbon through respiration has proved difficult, due to the challenge of measuring the losses associated with the turnover of soil organic matter (SOM) as distinct from autotrophic components. In forest ecosystems the δ¹³C value of respiration from turnover of SOM (δ¹³CR_SOM) is typically 2-4‰ enriched compared with that from roots and associated microbes (δ¹³CR_ROOTS), with that from the litter (δ¹³CR_LITTER) lying between the two. We measured soil respiration at 50 locations in a forest soil and then used differences in isotopic signatures to quantify the proportion of soil respiration arising from the turnover of SOM (fR_SOM) at a subset of 30 locations, chosen randomly. The soil surface CO₂ efflux was collected using an open chamber system supplied with CO₂-free air and the δ¹³C signature (δ¹³CR_S) measured, giving a mean (±SD) value across the site of −26.1 ± 0.58‰. The values of δ¹³CR_ROOTS, δ¹³CR_LITTER and δ¹³CR_SOM were measured at each location by incubation of roots, litter and root-free soil and collection of the CO₂ for isotopic analysis. δ¹³CR_SOM became progressively depleted with length of incubation (1.5‰ after 8 h), so CO₂ was collected after 20 min. The mean value of δ¹³CR_LITTER was −27.2 ± 0.68 ‰, which was indistinguishable from δ¹³CR_ROOTS of −27.6 ± 0.51‰, while δ¹³CR_SOM was −25.1 ± 0.88‰. δ¹³CR_ROOTS and δ¹³CR_SOM measured at each location were used as the end points of a two component mixing model to calculate fR_SOM, giving a mean value for fR_SOM of 0.61 ± 0.28. It was not possible to estimate fR_SOM using the total C contents of the roots and soil which were significantly depleted in ¹³C in comparison to their respired CO₂. However, at seven locations the δ¹³CR_S was slightly enriched compared with δ¹³CR_SOM (mean 0.3‰), which was not considered significantly different so fR_SOM was constrained to 1.0. If these seven rings were excluded mean fR_SOM was 0.49 ± 0.20. We have shown the possibility of using natural abundance ¹³C discrimination to quantify fR_SOM in a forest soil with an input of carbon only from C₃ photosynthesis.     

From waste to soil—carbon contents,respiration rates and ecotoxicological effects of an uncovered landfill site after 50 years

Purpose  

In this study, the ecotoxicological effects of the soil contaminations at an uncovered landfill site are assessed with two biological tests (earthworm avoidance test and luminous bacteria test). Furthermore, the state of rotting of the organic substance is estimated. Therefore, total organic carbon (TOC) contents and basal respiration rates are measured.     

Are ecological gradients in seasonal Q10 of soil respiration explained by climate or by vegetation seasonality?

Soil respiration (SR) is highly sensitive to future climate change, and particularly to global warming. However, considerable uncertainties remain associated with the temperature sensitivity of SR and its controlling processes. Using 384 field measurement data from 114 published papers and one book, this study quantifies the variation in the seasonal Q₁₀ values of soil respiration, the multiplier by which respiration rates increase for a 10 °C increase in temperature, and its drivers across different sites. No significant correlation between Q₁₀ and mean annual temperature or mean annual precipitation is found when statistically controlling seasonal changes in vegetation activity, deduced from satellite vegetation greenness index observations (normalized difference vegetation index, or NDVI). In contrast, the seasonal amplitude of NDVI is significantly and positively correlated with the apparent Q₁₀ of SR. This result indicates that the variations of seasonal vegetation activity exert dominant control over the variations of the apparent Q₁₀ of SR across different sites, highlighting the ecological linkage between plant physiological processes and soil processes. It further implies that the seasonal variation of vegetation activity may thus dominate the apparent seasonal temperature sensitivity. We conclude that the apparent Q₁₀ value of SR estimated from field measurements is generally larger than the intrinsic temperature sensitivity of soil organic matter decomposition, and thus cautions should be taken when applying apparent Q₁₀ values directly in ecosystem models. Our regression analysis further shows that when the amplitude of NDVI variation approximates 0 (and thus when the seasonality in vegetation activity is marginal), the residual Q₁₀ of SR for soil temperature measured at 5 cm depth is about 1.5.     

Soil respiration, N2O, and CH4 emissions from an Andisol under conventional-tillage and no-tillage cultivation for 4 years

No-tillage (NT) management is a promising method to sequester soil C and mitigate global warming caused by agricultural activities. Here, we report 4 years of continuous soil respiration rates and weekly nitrous oxide (N₂O) and methane (CH₄) emissions in NT and conventional-tillage (CT) plots in a typical Japanese volcanic soil. Overall, the soil respiration, N₂O emission, and CH₄ uptake decreased significantly in the NT plot. A difference in soil respiration and N₂O emission between the two plots began after the tillage treatment and the incorporation of crop residues and fertilizers, whereas the CH₄ uptake did not vary significantly during the fallow period after the treatments. The N₂O emission was higher from the CT than from the NT plot during the fall. The overall lower CH₄ uptake in the NT than in the CT plot likely resulted from a combination of decreased soil gas diffusivity and higher mineral N content at the soil surface. Higher soil respiration and N₂O emission occurred in the NT plot in the summer of 2003 and were plausibly caused by an increase in the soil moisture content that resulted from lower temperatures during July and August; the higher soil moisture must have accelerated the decomposition of organic matter accumulated in the topsoil. These results indicate that NT management is generally effective for the mitigation of the total GWP by reducing soil respiration and N₂O emission in temperate regions; however, NT management may increase rather than decrease these emissions when fields experience cool summers with frequent rainfall.     

Biochar amendment changes temperature sensitivity of soil respiration and composition of microbial communities 3 years after incorporation in an organic carbon-poor dry cropland soil

Topsoil samples were collected from plots in a dry cropland in the North China Plain 3 years after a single incorporation of biochar at 20 and 40 t ha^?1 and analyzed for abundances and composition of microbial community and for respiration under controlled laboratory conditions at 15, 20, and 25 °C. The addition of biochar generally reduced soil respirations at the three temperatures and the temperature sensitivity (Q₁₀) at 15–20 °C. Biochar amendment significantly increased bacterial 16S rRNA gene abundances and fungal ITS gene diversity and induced clear changes in their community compositions due to improvements in soil chemical properties such as soil organic C (SOC) and available N contents and pH. Illumina Miseq sequencing showed that the relative abundances of Actinobacteria, Gammaproteobacteria, Firmicutes, and Alternaria within Ascomycota, capable of decomposing SOC, were significantly decreased under biochar at 40 t ha^?1. The Q₁₀ values at 15–20 °C were significantly correlated with fungal diversity and dehydrogenase activity. Our results suggest that after 3 years a single biochar amendment could induce a shift in microbial community composition and functioning towards a slower organic C turnover and stability to warming, which may potentially reduce soil C loss in dryland under climate warming in the future.     

Controls on soil carbon accumulation during woody plant encroachment: Evidence from physical fractionation, soil respiration, and δC of respired CO2

Woody plant encroachment into grasslands and savannas is a globally extensive land-cover change that alters biogeochemical processes and frequently results in soil organic carbon (SOC) accrual. We used soil physical fractionation, soil respiration kinetics, and the isotopic composition of soil respiration to investigate microbial degradation of accrued SOC in sandy loam soils along a chronosequence of C₃woody plant encroachment into a C₄-dominated grassland in southern Texas. Our previous work in this system demonstrated significant changes in the chemistry and abundance of lignin and aliphatic biopolymers within particulate soil fractions during the first 40 yrs of woody plant encroachment, indicating selective accrual of purportedly more recalcitrant plant chemicals. However, during the long-term soil laboratory incubation presented herein, a greater proportion of SOC was mineralized in soils from older woody stands (34-86 yrs) than in soils from younger woody stands (14-23 yrs) and grasslands, providing no evidence for greater biochemical recalcitrance as a controlling mechanism for SOC accrual. In addition, δ¹³C values of respired CO₂ indicate that the mineralized SOC was predominately of C₃ origin from all woody stands along the chronosequence, and that respired CO₂ was primarily derived from the free light fraction (density <1.0 g/cm³) and macroaggregate-sized soil fraction. Our data suggested that the location of SOC among soil fractions was more important than plant polymer chemistry in determining SOC turnover rates during incubation. Surprisingly, estimates of the size and turnover rate of the active SOC pool based on respiratory kinetics did not increase with woody encroachment, and the turnover rate of the slower SOC pool decreased, again supporting the notion that increases in biochemically recalcitrant biopolymers did not hinder decomposition in the lab. These data indicate environmental conditions that may allow for C accrual in the field were alleviated during the controlled incubation. Therefore, C accrual in these sandy loam soils following woody encroachment should not be assumed stable, and this factor should be taken into account when considering responses of SOC to climate change or when making management decisions regarding land cover impacts on SOC.     

Does the influence of earthworms on water infiltration, nitrogen leaching and soil respiration depend on the initial soil bulk density? A mesocosm experiment with the endogeic species Metaphire posthuma

Soil compaction has a negative impact on both earthworm abundance and diversity. Recent studies, however, suggest that earthworm cast properties are not influenced by the initial soil bulk density. With time, earthworms could therefore transform soils with different bulk densities into a soil with the same physical state and thus with a similar ecological functioning. This study aimed to test this hypothesis in two laboratory incubation experiments. First, we measured the influence of soil bulk density (1.1 or 1.4?g?cm^?3) on the production of cast by the endogeic earthworm species Metaphire posthuma. In a second experiment, we investigated the effect of M. posthuma on water infiltration, NH ₄ ⁺ , and NO ₃ ^? leaching and soil respiration at the same two soil bulk densities. Although initially higher, earthworm casting activity in soil at 1.4?g?cm^?3 decreased until it reached the same level of activity as earthworms in soil at 1.1?g?cm^?3. This behavioral plasticity led to a transformation of compacted and loose soils, with their own functioning, to a third and similar state with similar hydraulic conductivity, nitrogen leaching, and soil respiration. The consequences for soil organization and soil functioning are discussed.     

Influence of cadmium on the metabolic quotient, <Emphasis Type="SmallCaps">l</Emphasis>- : <Emphasis Type="SmallCaps">d</Emphasis>-glutamic acid respiration ratio and enzyme activity : microbial biomass ratio under laboratory conditions

 This study was carried out to investigate the effect of very high cadmium concentrations (50 and 500 μg Cd g^–1 soil) on some biochemical and microbiological measurements under laboratory conditions involving daily soil samplings. The data for both DTPA- and water-soluble Cd showed two distinctive patterns during soil incubation; from 0 to 4 days, values were about 50–500 and 1–100 μg g^–1 dry weight soil, whereas they decreased markedly after 7 days. Both daily respiration and the ATP content but not the microbial biomass C determined by the fumigation–extraction method were lowered by high DTPA- and water-soluble Cd concentrations. Dehydrogenase and phosphatase activities as well as both enzyme activity : microbial biomass ratios were decreased by the high DTPA- and water-soluble Cd concentrations. In the first 2 days of incubation, the metabolic quotient (qCO₂) was also decreased by the highest values of available Cd. The early (after 6 h) mineralization of l- but not d-glutamic acid to CO₂ was inhibited during the 0–4 day incubation period by the highest Cd concentration. Possibly the l-enantiomer was used by a larger fraction of soil microorganisms than the d-enantiomer or, if they were used by the same fraction of soil microorganisms, the d-enantiomer was mineralized at a lower rate. The l- : d-glutamic acid respiration ratio was decreased by the high available Cd content because under polluted conditions soil microorganisms probably discriminated less between the two stereoisomers of glutamic acid. Received: 13 July 1999