Disentangling density‐dependent effects on egg production and survival from egg to recruitment in fish

Understanding of density‐dependent effects is key to achieving sustainable management of self‐regulating biological resources such as fish stocks. Traditionally, density‐dependent effects on population abundance in fish have been considered to occur from hatching to recruitment, based on the paradigm of proportionality between spawning stock biomass and total egg production. Here, we demonstrate how the existence of intraspecific and interspecific density dependence in egg production changes the current understanding of density‐dependent processes in the life history of fish, by disentangling density‐dependent effects on egg production and survival from egg to recruitment, using sardine (Sardinops melanostictus, Clupeidae) and anchovy (Engraulis japonicus, Engraulidae) as model species. For sardine, strong intraspecific density‐dependent effects occurred in egg production, but no density‐dependent effects occurred or if any they were weak enough to be masked by environmental factors from hatching to recruitment. In contrast, for anchovy, interspecific density‐dependent effects occurred in egg production. In the survival after hatching, anchovy experienced stronger intraspecific density‐dependent effects than currently recognized. This analysis could overturn the current understanding of density‐dependent effects in the life history, highlighting contrasts between the effects on individual quality and population abundance and between the model species. We propose to reconsider the basis of fisheries management and recruitment studies based on the revised understanding of density‐dependent effects in the life history of the respective species.     

Evaluation of observer‐ and industry‐based catch data in a recreational charter fishery

There is international recognition for greater inclusion of recreational fisheries catch data in species, fisheries and ecosystem assessments. Recreational charter fisheries provide important social services and contribute to total species catches. This study compares and validates industry logbook catch and effort data (1,357 trips) against observer data (154 trips) across six ports in a recreational charter fishery in eastern Australia. The mean numbers of clients and fishing effort (hours) per trip varied inconsistently between data sources and among ports. Logbooks did not adequately report released catches, and the mean number of species retained per trip was consistently underestimated in logbooks compared to observer data. For both data sources, catch rates of total individuals and key species displayed similar trends across different units of effort; catch per hour, client, client/hour and trip. The mean catch rates of total individuals and most key species, except those retained for bait, were similar across data sources, as were estimates of total fleet harvests. The length compositions of retained catches of some key species displayed truncation of larger organisms in the observer data whereas other species did not. Despite the shortcomings of the logbook data, future fishery and species monitoring strategies could include industry and observer data sources.     

Projections of the impacts of gear‐modification on the recovery of fish catches and ecosystem function in an impoverished fishery

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Variation in pre‐treatment count lead time and its effect on baseline estimates of cage‐level sea lice abundance

Treatment efficacy studies typically use pre‐treatment sea lice abundance as the baseline. However, the pre‐treatment counting window often varies from the day of treatment to several days before treatment. We assessed the effect of lead time on baseline estimates, using historical data (2010–14) from a sea lice data management programme (Fish‐iTrends). Data were aggregated at the cage level for three life stages: (i) chalimus, (ii) pre‐adult and adult male and (iii) adult female. Sea lice counts were log‐transformed, and mean counts by lead time relative to treatment day were computed and compared separately for each life stage, using linear mixed models. There were 1,658 observations (treatment events) from 56 sites in 5 Bay Management Areas. Our study showed that lead time had a significant effect on the estimated sea lice abundance, which was moderated by season. During the late summer and autumn periods, counting on the day of treatment gave significantly higher values than other days and would be a more appropriate baseline estimate, while during spring and early summer abundance estimates were comparable among counts within 5 days of treatment. A season‐based lead time window may be most appropriate when estimating baseline sea lice levels.     

A framework for adaptive gear and ecosystem‐based management in the artisanal coral reef fishery of Papua New Guinea

• 1. Artisanal fishing on coral reefs in Papua New Guinea is an important livelihood activity that is managed primarily at the level of local communities. Pockets of overexploitation exist and are expected to increase with plans for increased commercialization.
• 2. This paper provides a current assessment of the artisanal multi‐species coral reef fishery by examining selectivity of the dominant gear, namely line fishing, spearguns, and gill nets. Each gear has its own strengths and weaknesses in terms of use and conservation of resources, with no clear problem gear.
• 3. The three gears utilize different resources but there was moderate overlap in the species caught, particularly between gill nets and line fishing and marginally between lines and spearguns. Gill nets have the disadvantage of being destructive to coral and the advantage of catching commercial species. Line fishing catches an intermediate number of species but mostly large‐bodied and predatory species that could potentially reduce predation and the mean trophic level of the fishery. Spearguns catch the highest numbers of species, including many non‐commercial and herbivorous fish and could reduce the diversity of fish and encourage algal growth.
• 4. This information could be used in combination with scientific monitoring and traditional ecological knowledge to develop an adaptive management framework that uses local restrictions on the various gears to restore or balance the fishery and ecosystem. Restrictions could be selectively imposed: on gill nets when coral cover is low, line fishing when large‐bodied predators are depleted, and spearguns when biodiversity is reduced and algal abundance high.

Copyright © 2008 John Wiley & Sons, Ltd.     

Reconstructing 290 years of a data‐poor fishery through ethnographic and archival research: The East Pacific green turtle (Chelonia mydas) in Baja California,Mexico

Evaluating historical changes in the exploitation of marine organisms is a key challenge in fisheries ecology and marine conservation. In the Eastern Pacific, marine turtles were exploited for millennia before systematic monitoring began <50 years ago. Using ethnographic and historical data, we generated a detailed reconstruction of the East Pacific green sea turtle (Chelonia mydas) fishery in Mexico's Baja California peninsula from 1700 to 1990. Sea turtles from the region's important feeding areas were a staple food source from the earliest phases of human occupation, dating back at least 12,000 years. In contrast with regions such as the Caribbean, small human populations and limited market access resulted in apparently sustainable turtle harvests until the second half of the 20th century. We found that the estimated annual catches between 1960 and 1980 exceeded the estimated annual catches of the previous 250 years by an order of magnitude, leading to the collapse of the fishery and the depletion of the green turtle population. A total ban on sea turtle captures in 1990, comprehensive nesting beach protection, and significant conservation efforts resulted in increases in breeding females on nesting beaches and catch rates in scientific monitoring on main feeding grounds since the early 2000s. This provides a positive outlook for this once‐depleted population segment. Although further research is needed to evaluate current conservation status, we have identified a date, between 1950 and 1960, which can serve as a reliable temporal reference for future evaluations of historical baseline abundance in this region.     

Potential impacts of non‐native channel catfish on commercially important species in a Japanese lake,as inferred from long‐term monitoring data

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The use of at‐sea‐sampling data to dissociate environmental variability in Norway lobster (Nephrops norvegicus) catches to improve resource exploitation efficiency within the Skagerrak/Kattegat trawl fishery

Research into the influence of environmental variables on the behaviour of Norway lobster (Nephrops norvegicus), and hence catch rates, dates back to the 1960s (e.g., Höglund and Dybern, Diurnal and seasonal variations in the catch‐composition of Nephrops norvegicus (L.) at the Swedish west coast. ICES CM 1965/I46; Simpson, Variations in the catches of Nephrops norvegicus at different times of day and night. Rapport et Proés‐verbaux des Réunions Conseil permanent international pour 1'Exploration de la Mer 156:186). However, the use of fishery‐dependent data in identifying influential factors is relatively limited and only includes a number of papers on a limited dataset (e.g., Redant and De Clark, Diurnal variations in CPUE and length composition of the catches in a Nephrops directed fishery in the Central North Sea. ICES CM 1984/K:3; Maynou and Sardà, Influence of environmental factors on commercial trawl catches of Nephrops norvegicus (L.). ICES J. Mar. Sci. 58:1318). Here, we aimed to dissociate environmental variability in Norway lobster catches to improve resource exploitation efficiency within the Skagerrak and Kattegat trawl fisheries by utilising data collected as part of an extensive at‐sea‐sampling programme spanning 16 years. Catch rates were modelled using Generalized Additive Mixed Models (GAMMs) and considered a range of response variables, including depth, temperature, current speed, season, moon phase and time of day. The results obtained herein showed that time of day, season, depth, temperature, year, trawl type and location all significantly affect catch rates of Nephrops.     

Effect of environmental conditions on the seasonal and inter‐annual variability of small pelagic fish abundance off North‐West Africa: The case of both Senegalese sardinella

The objective of this study was to assess the effect of environmental variations on the abundance of Sardinella aurita and Sardinella maderensis in Senegalese waters in the upwelling system. Monthly data indicating the abundance of sardinella were first estimated from commercial statistics, using Generalized Linear Model from 1966 to 2011. Abundance indices (AIs) were then compared with environmental indices, at the local scale, a Coastal Upwelling Index (CUI) and a coastal Sea Surface Temperature (SST) index, and on a large scale, the North Atlantic Oscillation (NAO), the Atlantic Multidecadal Oscillation (AMO) and the Multivariate El Niño Southern Oscillation Index (MEI), using correlations and times series analyses. The results showed that the abundance of sardinella is determined by a strong seasonal pattern and inter‐annual fluctuations. The abundance of S. aurita peaked in spring and in autumn, whereas that of S. maderensis peaked in the warm season (July–September). The trend of the sardinella abundance was significantly correlated with the CUI, especially in autumn and spring. Interannual fluctuations of S. maderensis and S. aurita abundance are, respectively, driven by the precocity and the duration of the upwelling season that is attributed to distinct migration patterns. Both sardinella species also respond with a delay of around 4 years to the winter NAO index and the autumn CUI, and the AMO index, respectively, both related to migration patterns. The wide variations in sardinella biomass are caused by variations in environmental conditions, which should be considered in the implementation of an ecosystem‐based approach in sardinella stocks management.     

The effect of the sampling scale on zooplankton community assessment and its implications for the conservation of temporary ponds in south‐west Spain

• 1. The zooplankton (rotifer and microcrustacean) assemblages of temporary ponds in the Doñana National Park (south‐west Spain) have been compared in two surveys of contrasting scales that resulted in the same number of samples: an extensive survey of 36 ponds sampled in May 1998 (or widespread survey) and a survey of nine ponds sampled four times over 2 years (or cumulative survey).
• 2. The total number of microcrustacean and rotifer taxa was larger in the cumulative survey (43 and 41 taxa, respectively) than in the widespread survey (39 and 34, respectively). Crustacean assemblages became less alike throughout the cumulative survey.
• 3. The presence of invertebrates (Coleoptera, Odonata, Heteroptera and crayfish) and aquatic vertebrates (fish and salamanders) was recorded as an estimate of potential predator impact on zooplankton. Several pond features (water depth, conductivity, pH, chlorophyll a concentration, distance to the nearest permanent pond and to the marsh) were also measured in both surveys.
• 4. A combination of these environmental factors was more strongly related to the similarity matrices derived from the zooplankton assemblages of the cumulative survey (Rho=0.7) than to those of the widespread survey (Rho<0.4). The distance of ponds to the marsh was an important factor in explaining this correlation as well as the strongest factor in the ordination of crustacean assemblages following a CCA.
• 5. Predation by exotic fish in long‐hydroperiod ponds where overflow drains to the nearby marsh (fish source) is the mechanism likely to explain the changes in crustacean composition recorded in the cumulative survey.
• 6. The cumulative survey was more suitable for the study of zooplankton diversity as it rendered a higher number of taxa and gave more insight into the mechanisms that explain taxon richness. Thus, conservation strategies in temporary habitats require a scale of observation that includes long temporal changes.

Copyright © 2006 John Wiley & Sons, Ltd.     

A tale of two seas: a meta‐analysis of crustacean stocks in the NE Atlantic and the Mediterranean Sea

Meta‐analysis of marine biological resources can elucidate general trends and patterns to inform scientists and improve management. Crustacean stocks are indispensable for European and global fisheries; however, studies of their aggregate development have been rare and confined to smaller spatial and temporal scales compared to fish stocks. Here, we study the aggregate development of 63 NE Atlantic and Mediterranean crustacean stocks of six species (Nephrops norvegicus, Pandalus borealis, Parapenaeus longirostris, Aristeus antennatus, Aristaeomorpha foliacea and Squilla mantis) in 1990–2013 using biomass index data from official stock assessments. We implemented a dynamic factor analysis (DFA) to identify common underlying trends in biomass indices and investigate the correlation with the North Atlantic Oscillation (NAO) index. The analysis revealed increasing and decreasing trends in the northern and southern NE Atlantic, respectively, and stable or slowly increasing trends in the Mediterranean, which were not related to NAO. A separate meta‐analysis of the fishing mortality (F) and biomass (B) of 39 analytically assessed crustacean stocks was also carried out to explore their development relative to MSY. NE Atlantic crustacean stocks have been exploited on average close to F_MSY and remained well above B_MSY in 1995–2013, while Mediterranean stocks have been exploited 2–4 times above F_MSY in 2002–2012. Aggregate trends of European crustacean stocks are somewhat opposite to trends of fish stocks, suggesting possible cascading effects. This study highlights the two‐speed fisheries management performance in the northern and southern European seas, despite most stocks being managed in the context of the European Union's Common Fisheries Policy.     

The effect of varying dietary digestible protein and digestible non‐protein energy sources on growth,nutrient utilization efficiencies and body composition of carp (Cyprinus carpio) evaluated with a two‐factorial central composite study design

To determine optimized dietary nutrient supply for common carp (Cyprinus carpio), nine isoenergetic diets were formulated according to a two‐factorial central composite design on digestible basis. Digestible protein contents (DP) in diets ranged from 208.8 to 251.2 g/kg, and digestible fat‐to‐digestible carbohydrate energy ratios (DEF/DEC) varied from 0.79 to 1.21. Carp were fed four times a day at a daily feeding rate of 2.5 g/kg body weight for 56 days. Optima of responses were determined by applying the standard least squares method according to response surface methodology. All diets resulted in excellent performance with feed conversion ratios lower than 1 and digestible protein efficiency ratios (PER_dig) higher than 4.6. For most parameters, calculated extreme values were minimum points, except for FCR, retention efficiencies of digestible arginine (RetArg_dig) and of digestible methionine (RetMet_dig), being maximum points, and retention efficiencies of digestible isoleucine, digestible sulphuric amino acids and digestible lysine, being saddle points. Highest growth and feed utilization efficiency were graphically determined for a diet containing 208.8 g/kg DP/1.21 DEF/DEC. Body lipid was optically increased for 251.2 g/kg DP/0.79 DEF/DEC in comparison with 208.8 g/kg DP/1.21 DEF/DEC.     

The effect of C/N ratio on bacterial community and water quality in a mussel‐fish integrated system

A 30‐day experiment was conducted to evaluate the effect of C/N ratio on water quality and bacterial community in an integrated system comprising one molluscan species (pearl mussel Hyriopsis cumingii) and two fish species (gibel carp Carassius gibelio and silver carp Hypophthalmichthys molitrix) at five C/N ratios (6, 8, 10, 12 and 14). The mussel and fishes were reared in the experimental tanks (400 L), but gibel carp received formulated feed. Water quality in the experimental tanks was analysed on day 0, 10, 20 and 30, and bacterial community in the water column and sediment was analysed on day 30. Total nitrogen, total phosphorus and total organic carbon accumulated in the tanks over time. Ammonia and nitrite decreased with the increase in C/N ratio. Bacterial community in the water column and sediment changed at the phylum and genus levels with the increase in C/N ratio, and the critical C/N ratio causing a functional shift of bacterial community occurred at 10 in water column and 12 in sediment. The increase in C/N ratio benefited the growth of both potential probiotics and pathogenic bacteria. The high C/N ratio enhanced the bacterial functions of chemoheterotrophy and hydrocarbon degradation, but depressed the functions of nitrification and denitrification in the water column and sediment respectively. This study reveals that the C/N ratio can be used as a tool to manipulate the bacterial community and water quality in the mussel‐fish integrated system.     

Partial to total replacement of fishmeal by poultry by‐product meal in diets for juvenile rainbow trout (Oncorhynchus mykiss) and their effect on fatty acids from muscle tissue and the time required to retrieve the effect

Triplicate groups of rainbow trout (Oncorhynchus mykiss) (1.4 ± 0.1 g) were fed experimental diets containing four levels of protein substitution to totally replace fishmeal with poultry by‐product meal (0, 33, 67 and 100%). Fishmeal (FM) from tuna fish by‐products and poultry by‐product meal ‘pet food grade' (PBM) were used. Diets were formulated to be isonitrogenous (43.5% crude protein) and isolipidic (12.5% crude fat). After 80 days of feeding, no significant differences were found in terms of thermal unit growth coefficient (TGC). However, the EPA levels in muscle tissue among treatments 0PBM, 24PBM and 44PBM were found to be significantly higher than those for the 59PBM diet. Nevertheless, a re‐feeding period with the control diet showed that 28 days was long enough to regain the FA profile needed. We concluded that PBM used up to 44% in diets for juvenile rainbow trout can be used without a significantly decrease in EPA and DHA under the present conditions. The use of a whole fishmeal diet could be an important strategy to recuperate the fatty acid profile obtained when trout is feed on PBM basis. It will be important to perform longer experiments with larger fish to confirm these results.     

The effect of lake morphometry on thermal habitat use and growth in Arctic charr populations: implications for understanding climate‐change impacts

Oxygen stable isotope temperature reconstruction methods were used to estimate mean experienced summer temperatures from growth zones within individual Arctic charr otoliths sampled from lakes with contrasting morphologies but proximate locations. For either lake, otolith‐estimated temperatures were not significantly related to back‐calculated growth. Fish in the smaller lake evidenced an increase in growth with age related to increasing use of cooler thermal habitats, with the use of thermal habitat possibly governed by predation risks. No relationships between age, growth or temperature were observed in the larger lake. Significant negative effects on back‐calculated growth were observed due to increasing air temperatures in the smaller and shallower lake, possibly owing to warmer surface and littoral waters and a limited amount of preferred cool‐water habitat. A similar relationship was not observed in the larger and deeper lake and indicated that resident Arctic charr were not as vulnerable to the impacts of temperature warming, possibly because of better behavioural thermoregulation opportunities in the cooler, deeper lake. Results provide evidence for differing climate‐influenced growth outcomes among proximately located populations, with outcomes likely to depend on the differences among habitats, including lake size and morphometry which may act to influence fish densities in available preferred thermal habitats.     

The effect of dietary n‐3 series fatty acids on the number of pleopadal egg and stage 1 juvenile in freshwater crayfish,Astacus leptodactylus Eschscholtz

The effect of dietary n‐3 series fatty acids on the number of pleopadal egg and stage 1 juvenile in freshwater crayfish, Astacus leptodactylus was investigated. Crayfish were fed with n‐3 series fatty acids supplemented diets and a control diet for 251 days. Control diet did not comprise additional n‐3 series fatty acids. However, D2, D3 and D4 groups were supplemented with n‐3 series fatty acids at 1%, 2% and 3% level respectively. Results showed the beneficial effects of dietary n‐3 series fatty acids on the production of pleopodal egg and stage 1 juvenile number. At the end of the experiment, pleopodal egg (from 177 to 234) and stage 1 juvenile number (from 167 to 225) increased significantly with increased dietary n‐3 series fatty acid level. In addition, an increase in dietary n‐3 series fatty acids led to an increase in number of pleopodal egg and stage 1 juvenile produced per gram of female crayfish weight. It can be concluded that the reproductive efficiency of A. leptodactylus (i.e., pleopodal egg and stage 1 juvenile number) can be improved in controlled hatchery conditions by adding n‐3 series fatty acid into the diet of this species.     

The effect of time‐dependent protein restriction on growth factors,nonspecific immunity,body composition,fatty acids and amino acids in the Siberian sturgeon (Acipenser baerii)

The effect of time‐dependent protein restriction (PR) and refeeding were investigated on growth, body composition, fatty acids (FA), amino acids (AA) and nonspecific immune functions in the juvenile Siberian sturgeon (Acipenser baeri; 75 ± 5 g). Test diets included: T1 (control) and T2 fish fed diets containing 400 and 300 g/kg protein respectively during the whole experimental period, T3 (every other day) and T4 (every other week) fish were fed diets containing 300 g/kg protein (PR) and refeeding with diet containing 400 g/kg protein respectively, and T5 fish fed a diet containing 300 g/kg protein for 3 weeks and a diet containing 400 g/kg protein for 5 weeks, were fed to the fish for 56 days by visual satiation. Unlike ration T2 and T5, feeding treatments of T3 and T4 showed an increase in fish growth and body composition (p < 0.05) and they were very close to the control group (p > 0.05). Regarding the fatty acid profile, although the percentage of highly unsaturated fatty acids (HUFA) and polyunsaturated fatty acids (PUFA) declined significantly in the T2 and T5 groups, the saturated fatty acid (SFA) and monounsaturated fatty acids (MUFA) indicated no change among the treatments. In addition, the T2 and T5 groups demonstrated a reduction in essential amino acids (EAA) with a simultaneous increase in nonessential amino acids (NEAAs), which was significant from that of controls and other groups (p < 0.05). In terms of nonspecific immune parameters (serum lysozyme activity and alternate complement activity [ACH50]), treatment 3 has an appropriate result that did not have a significant difference with the control group (p > 0.05), but there was significant difference with other groups (p < 0.05). As a result, the T3 treatment can be used in sturgeon aquaculture practically without any negative impacts on biological or physiological indices.     

The effect of a crab predator (Cancer porteri) on secondary producers versus ecological model predictions in Tongoy Bay (south‐east Pacific coast): implications for management and fisheries

• 1. The present study compares the propagation of effects observed as a response to changes in the abundance of a top predator (top‐down cascading effect) in a benthic community within the south‐east Pacific upwelling ecosystem of northern Chile, with predictions derived from quantitative and qualitative multispecific models.
• 2. Results with Loop Analysis achieved 71.4% of predictive certainty; indicating that this technique is useful for assessment of the effects of human intervention related to the mud‐bottom ecosystem tested. On the other hand, Ecosim using bottom‐up flow control mechanism achieved only 14.3% certainty. In an intermediate range, predictions obtained using the Mixed Trophic Impacts and Ecosim models using top‐down, mixed and flow control mechanisms estimated by the program, achieved 57.1% certainty.
• 3. The results obtained have important implications for the management of communities and ecosystems since human interventions can be studied using holistic models with an end result of evaluating the eventual changes that they propagate.

Copyright © 2007 John Wiley & Sons, Ltd.