Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field

Abstract

Viruses are the most abundant biological entities in marine and freshwater environments. Many studies have shown the ecological importance of viruses in the primary production and microbial food web in aquatic environments. However, no studies have examined viral abundance in the floodwater of paddy fields. The present study surveyed the abundance of virus-like particles (VLPs) and bacteria in the floodwater of a Japanese paddy field under a long-term fertilizer trial since 1925 during the rice cultivation period. Virus-like particles and bacterial abundances in the floodwater ranged from 5.6 × 10⁶ to 1.2 × 10⁹ VLPs mL^?1 and from 9.2 × 10⁵ to 4.3 × 10⁸ cells mL^?1 with mean abundances of 1.5 × 10⁸ VLPs mL^?1 and 5.1 × 10⁷ cells mL^?1, respectively, and increased with an increase in the turbidity of the floodwater with suspended particles. The magnitude of seasonal variation was more than 50-fold for VLP abundance and 100-fold for bacterial abundance. The virus-to-bacterium ratios fluctuated over the rice cultivation period, ranging from 0.11 to 72 and their increase correlated with the decrease in bacterial abundance. Our results suggest that viral abundance in the floodwater of paddy fields is larger than in natural marine and freshwater environments.     

Organic‐carbon fractions in an agricultural topsoil assessed by the determination of the soil mineral surface area

According to recent conceptual models, the organic carbon (OC) of soils can be divided into OC fractions of increasing stability from labile free OC to resistant OC associated with the soil mineral phase. In this study, we present a method for quantifying two OC fractions based on soil aggregate–size fractionation and the N₂ gas–adsorption method. For this purpose, we analyzed soil material of the plow layer of a Haplic Chernozem subjected to different fertilizer treatments (no fertilizer, mineral fertilizer, mineral and organic fertilizer). The total organic‐C concentration (TOC) and the clay content of the different size fractions were determined as well as the specific surface area (SSA_mineral) and the sample pore volume after thermal oxidation (OC‐free). The TOC of the different soil‐aggregate fractions was linearly related to SSA_mineral. Clay‐associated OC and nonassociated OC fractions of the different soil samples were quantified using two methods based on the OC surface loading at the clay fraction. The application of organic fertilizer increased the amount of nonassociated OC but hardly affected the concentration of clay‐associated OC. This finding agrees with previous studies on C dynamics in soils and indicates a finite capacity of soil materials to sequester OC. Even without any addition of organic fertilizer, the mineral phase of the analyzed soil material appears to be C‐saturated.