Do species life history traits explain population responses to roads? A meta-analysis

Efforts to mitigate road effects are now common in new highway construction projects. For effective mitigation of road effects it is important to identify the species whose populations are reduced by roads, so that mitigation efforts can be tailored to those species. We conducted a meta-analysis using data from 75 studies that quantified the relationship between roads and/or traffic and population abundance of at least one species to determine species life history characteristics and behavioral responses to roads and/or traffic that make species or species groups prone to negative road and/or traffic effects. We found that larger mammal species with lower reproductive rates, and greater mobilities, were more susceptible to negative road effects. In addition, more mobile birds were more susceptible to negative road and/or traffic effects than less mobile birds. Amphibians and reptiles were generally vulnerable to negative road effects, and anurans (frogs and toads) with lower reproductive rates, smaller body sizes, and younger ages at sexual maturity were more negatively affected by roads and/or traffic. Species that either do not avoid roads or are disturbed by traffic were more vulnerable to negative population-level effects of roads than species that avoid roads and are not disturbed by traffic. In general, our results imply that priority for mitigation should be directed towards wide-ranging large mammals with low reproductive rates, birds with larger territories, all amphibians and reptiles, and species that do not avoid roads or are disturbed by traffic.     

Do plant species with different growth strategies vary in their ability to compete with soil microbes for chemical forms of nitrogen?

We used dual labelled stable isotope (¹³C and ¹⁵N) techniques to examine how grassland plant species with different growth strategies vary in their ability to compete with soil microbes for different chemical forms of nitrogen (N), both inorganic and organic. We also tested whether some plant species might avoid competition by preferentially using different chemical forms of N than microbes. This was tested in a pot experiment where monocultures of five co-existing grassland species, namely the grasses Agrostis capillaris, Anthoxanthum odoratum, Nardus stricta, Deschampsia flexuosa and the herb Rumex acetosella, were grown in field soil from an acid semi-natural temperate grassland. Our data show that grassland plant species with different growth strategies are able to compete effectively with soil microbes for most N forms presented to them, including inorganic N and amino acids of varying complexity. Contrary to what has been found in strongly N limited ecosystems, we did not detect any differential uptake of N on the basis of chemical form, other than that shoot tissue of fast-growing plant species was more enriched in ¹⁵N from ammonium-nitrate and glycine, than from more complex amino acids. Shoot tissue of slow-growing species was equally enriched in ¹⁵N from all these N forms. However, all species tested, least preferred the most complex amino acid phenylalanine, which was preferentially used by soil microbes. We also found that while fast-growing plants took up more of the added N forms than slow-growing species, this variation was not related to differences in the ability of plants to compete with microbes for N forms, as hypothesised. On the contrary, we detected no difference in microbial biomass or microbial uptake of ¹⁵N between fast and slow-growing plant species, suggesting that plant traits that regulate nutrient capture, as opposed to plant species-specific interactions with soil microbes, are the main factor controlling variation in uptake of N by grassland plant species. Overall, our data provide insights into the interactions between plants and soil microbes that influence plant nitrogen use in grassland ecosystems.     

Do long-lived ants affect soil microbial communities?

This study was designed to test the hypothesis that desert ant species that build nests that remain viable at a particular point in space for more than a decade produce soil conditions that enhance microbial biomass and functional diversity. We studied the effects of a seed-harvester ant, Pogonomyrmex rugosus, and two generalist ant species, Aphaenogaster cockerelli and Myrmecocystus depilis, on soil microbial communities. Microbial biomass was higher in P. rugosus-modified soils than in reference soils when soil water content was higher than 3%. Microbial biomass was either higher in reference soils or exhibited no difference in reference soils and nest-modified soils of A. cockerelli and M. depilis. There were differences in microbial functional diversity and microbial community level physiological profiles (MicroResp method) between ant-nest-modified and reference soils of the three ant species on some sampling dates. Temporal patterns of soil microbial communities associated with the ant species resulted from differences in soil moisture, density, and species composition of the annual plant communities associated with the ant nests and in reference areas. Differences in annual plant communities associated with ant nests and surrounding areas resulted in different chemical inputs into the soil organic-matter pools. This study shows that generalizations about the effects of long-lived ant nests on soil biota in arid regions must consider feeding behaviors of the ant species and temporal patterns of rainfall.     

Do organic inputs alter resistance and resilience of soil microbial community to drying?

Grassland ecosystems in south-eastern Australia are important for dairy and livestock farming. Their productivity relies heavily on water availability, as well as the ecosystem services provided by soil microbial communities including carbon and nutrient cycling. Management practices such as compost application are being encouraged as a means to improve both soil water holding capacity and fertility, thereby buffering against the impacts of increasing climate variability. Such buffering consists of two complementary processes: resistance, which measures the ability of an ecosystem to maintain community structure and function during a period of stress (such as drying); and resilience, which measures the ability of an ecosystem to recover community structure and function post-stress. We investigated the effects of compost on the resistance and resilience of the grassland soil ecosystem under drying and drying with rewetting events, in a terrestrial model ecosystem. Overall, compost addition led to an increase in soil moisture, greater plant available P and higher plant δ¹⁵N. Soil C:nutrient ratios, mineral N content (NH₄⁺ and NO₃⁻) and soil microbial PLFA composition were similar between amended and unamended soils. Rainfall treatment led to differences in soil moisture, plant above-ground and below-ground biomass, plant δ¹⁵N, soil mineral N content (NH₄⁺ and NO₃⁻) and microbial biomass C, N and P composition but had no effects on soil C:nutrient ratios, plant available P and soil microbial PLFA composition. There was little interaction between rainfall and compost. Generally, the soil microbial community was resistant and resilient to fluctuations in rainfall regardless of compost amendment. However, these properties of the soil microbial community were translated to resilience and not resistance in soil functions. Overall, the results below-ground showed much greater response to rainfall than compost amendment. Water was the key factor shaping the soil microbial community, and nutrients were not strong co-limiting factors. Future projections of increasing rainfall variability will have important below-ground functional consequences in the grassland, including altered nutrient cycling.     

Ants mediate soil water in arid desert ecosystems: Mitigating rainfall interception induced by biological soil crusts?

As vital components of desert systems, the roles of ants in arid ecological processes have been well documented, while little attention has been given to their effects on soil water. We conducted a six-year investigation in sand dune systems stabilized via revegetation, to explore the hydrological role of ants through comparing the influence of ant nests on rainfall infiltration in different-aged revegetated dunes. The presence of ant nests markedly enhanced infiltration due to weakening the rainfall interception by biological soil crusts (BSCs) in revegetated dunes. The distribution of ant nest was denser in older revegetated areas, due to better developed BSCs of later successional stages, compared to younger revegetated areas. Ants prefer later to early successional BSCs because the later lichen–moss dominated crusts were thicker and their surface was more stable than the early cyanobacteria dominated crusts. Conversely, the crustal rainfall interception was positively correlated with BSC thickness. These findings suggest that the occurrence of ant nests in older revegetated areas benefited to the planted shrubs with deeper root systems and maintain a relative constant cover of shrubs in artificial sand-binding vegetation following an increase in infiltration to deeper soil layers.     

Do different agronomic soil tests identify similar nutrient deficiencies?

Traditionally, locally calibrated soil tests were used for fertilizer and lime recommendations. Farmers and advisors are increasingly using new ‘universal’ soil tests without local calibration. The objective of this study was to compare five commercially available soil tests and to determine whether they would provide similar recommendations. In total, 24 fields in Western Finland were sampled for 4 years while being treated with fertilizers, lime and manure. The soil samples were analysed with Mehlich-3, ammonium acetate, H3A, hydrochloric acid and mild acetic acid (Spurway) extractants. In addition, Soil Health Tool (CO₂ burst, water-soluble C and N) and tissue testing were conducted. The different tests extracted different orders of magnitude of nutrients (especially P and Mg), but the results from the different extractions were correlated. Mehlich-3 degree of phosphorus saturation (DPS) presented a threshold, below which soluble phosphorus was not detected. Similar thresholds were found for P, S and Mg. Mehlich-3 and ammonium acetate provided similar results for Ca, Mg and K and can be used interchangeably for liming recommendations. Mehlich-3 identified more fields with Zn, Cu, B and S deficiencies and less fields with Mn deficiencies compared with ammonium acetate + EDTA and tissue testing. The tests had strong correlation, but the determination of nutrient deficiencies needs local calibration of deficiency limits.     

Do water molecules bridge soil organic matter molecule segments?

One of the most valuable ecological potentials of soil organic matter (SOM) is based on its highly dynamic nature, which enables flexible reactions to a variety of environmental conditions. SOM controls a large part of the processes occurring at biogeochemical interfaces in soil and may contribute to sequestration of organic chemicals. This contribution focuses on dynamics in SOM from a viewpoint that regards SOM as an amorphous matrix, in which weak intermolecular interactions rather than covalent binding are considered. This view is based on the conception of SOM as a supramolecular assembly, which was first suggested in studies by A. Piccolo and R. L. Wershaw. Based on our recent results on thermal analysis of SOM, our central hypothesis is that regardless of the individual molecular mass, SOM undergoes physicochemical matrix aging, driven by dynamics in intermolecular cross‐linking via bridges of water molecules. In this study, we have made the first efforts to evaluate the water‐bridge hypothesis with proton NMR relaxation and proton wideline NMR. The results clearly indicate changes in relaxation time and proton line shape induced by manipulations of thermal history, which suggests an increase in side‐chain mobility upon heating that remains after cooling. Side‐chain mobility slowly decreases again within at least 1–2 weeks. Our current results strongly suggest even longer aging periods. This observation supports the hypothesis that water molecules bridge molecular segments of SOM. The bridges may be easily disrupted, while re‐formation is slow due to diffusion limitation in the SOM matrix.     

Does salinity enhance Cd toxicity to soil alkaline phosphatase?

The aim of this study was to provide data to assess the additive effects of soil salinity on the toxicity of Cd to soil alkaline phosphatase (EC 3.1.3.1). Two soils (Langroud acid soil and Shervedan calcareous soil) were artificially salinized with NaCl. The natural and salinized soils were treated with CdSO₄ solutions to give a Cd concentration in the range 3–5000 mg kg^?1. Soil alkaline phosphatase activity was measured after 3 days of incubation. Salinity enhanced the extractable Cd concentration in both Langroud and Shervedan soils. The percentage of soil alkaline phosphatase activity inhibited by Cd was significantly increased from 27.8 to 45 in the Langroud acid soil as salinity increased from natural levels to 28 dS m^?1. An increase in the inhibition percentage was not observed in the Shervedan soil. Lower values for the ecological dose causing 50% inhibition (ED₅₀) under saline conditions in the Shervedan soil supported the hypothesis that Cd may be more toxic to soil alkaline phosphatase when the soil is more saline. We conclude that Cd toxicity to soil alkaline phosphatase is salinity dependent and that higher Cd concentrations under saline conditions are probably responsible for the enhanced Cd toxicity to soil alkaline phosphatase.     

Is thermal oxidation at different temperatures suitable to isolate soil organic carbon fractions with different turnover?

Findings of previous studies suggest that there are relations between thermal stability of soil organic matter (SOM), organo‐mineral associations, and stability of SOM against microbial decay. We aimed to test whether thermal oxidation at various temperatures (200°C, 225°C, 275°C, 300°C, 400°C, or 500°C) is capable of isolating SOM fractions with increasing stability against microbial degradation. The investigation was carried out on soils (Phaeozem and Luvisol) under different land‐use regimes (field, grassland, forest). The stability of the obtained soil organic carbon (SOC) fractions was determined using the natural‐¹³C approach for continuously maize‐cropped soils and radiocarbon dating. In the Luvisol, thermal oxidation with increasing temperatures did not yield residual SOC fractions of increasing microbial stability. Even the SOC fraction resistant to thermal oxidation at 300°C contained considerable amounts of young, maize‐derived C. In the Phaeozem, the mean ¹⁴C age increased considerably (from 3473 y BP in the mineral‐associated SOC fraction to 9116 y BP in the residual SOC fraction after thermal oxidation at 300°C). An increasing proportion of fossil C (calculated based on ¹⁴C data) in residual SOC fractions after thermal oxidation with increasing temperatures indicated that this was mainly due to the relative accumulation of thermally stable fossil C. We conclude that thermal oxidation with increasing temperature was not generally suitable to isolate mineral‐associated SOC fractions of increasing microbial stability.     

Vertical stratification and trophic interactions among organisms of a soil decomposer food web – a field experiment using 15N as a tool

In this field study, we explored the spatial segregation between the litter- and humus-inhabiting organisms of the detrital food web using ¹⁵N-isotope technique. The study was established in 11 × 11 m plots fertilized with ¹⁵N-labelled urea. Ten years after urea application, soil samples were taken, both from the litter layer and the combined F+H layer. The samples were analysed for N content and the proportion of ¹⁵N in (i) the residual organic matter in the litter and F+H layer (excluding microbes), (ii) microbial biomass, and (iii) various feeding guilds of soil fauna. The basal resource, soil microbes, and the fauna were more enriched with ¹⁵N in the F+H layer than in the litter layer. In the litter layer, the ¹⁵N enrichment of the expected food source equalled the one of the consumers, whereas in the F+H layer all trophic groups, except microbes and small microbi-detritivores, showed a significantly lower ¹⁵N enrichment than their expected food source. The results indicate that large and mobile humus-inhabiting decomposers exploit the overlying litter layer as a feeding site, whereas the feeding of the more sedentary smaller organisms is restricted to the humus layer.     

Do nitrogen isotope patterns reflect microbial colonization of soil organic matter fractions?

Different theories have been brought forward to explain the commonly observed δ¹⁵N enrichment with depth in soil profiles, including the discrimination against ¹⁵N during N decomposition and the buildup of ¹⁵N-enriched microbial residues. A combination of soil organic matter (SOM) size and density fractionations, ¹⁵N determinations, and phospholipid fatty acid (PLFA) analyses was conducted on soils from a pristine N-limited Nothofagus forest in southern Chile. The purpose of this study was to investigate which SOM fractions mostly reflect the ¹⁵N-enrichment pattern and to link ¹⁵N SOM enrichment with microbial community composition. Nitrogen-15 enrichments were greater for the microaggregate (<150 μm) than for the macroaggregate (>150 μm) size fraction, with Rayleigh isotope enrichment factors averaging −8.5‰ and −3.7‰, respectively. The macro-organic matter density fractions (>150 μm) showed intermediate enrichment factors of −5.1‰ and −7.3‰ for the light (<1.37 g cm⁻³) and heavy (>1.37 g cm⁻³) fraction, respectively. The abundance of fungal and bacterial PLFAs was significantly higher in the microaggregate compared to the macroaggregate size fraction, but their relative abundance did not change between aggregate size fractions. Our data link differential ¹⁵N enrichment of SOM fractions to “total” microbial abundance and, as such, corroborates existing theories of microbial-induced ¹⁵N enrichment. Isotopic fractionation during microbial N decomposition processes alone could not explain the large ¹⁵N enrichment in the microaggregate size fraction (−8.5‰) and the heavy density fraction (−7.3‰). We therefore suggest that microbial turnover and accretion of ¹⁵N-enriched microbial (especially fungal) compounds was an additional driver for ¹⁵N enrichment of this soil profile.     

Understanding mechanisms of soil biota involvement in soil aggregation: A way forward with saprobic fungi?

Soil aggregation is a key ecosystem process that strongly affects soil structure. Soil structure is the three dimensional arrangement of primary particles, organic matter, soil aggregates and associated pores. As such, soil aggregation influences the organization of soil biodiversity and soil-borne biogeochemical processes. Saprobic fungi (SF) have promising but largely untapped potential to offer new perspectives and insights into mechanisms of soil aggregation. The study of SF permits identification of traits that may predict soil aggregation component processes: formation, stabilization and disintegration. The measurement of fungal key traits in experiments aimed at soil aggregation effects will generate data necessary for mechanistic understanding. When such efforts are combined with collecting such information across a range of systems in curated databases this can, by channeling efforts, lead to a step change in our understanding and modeling of organism-mediated soil aggregation mechanisms and changes in functional diversity due to global change.     

Protective mechanism of the soil–plant system with respect to heavy metals

Purpose

The aim of this work was to select and assess the efficiency of different amendments applied to ordinary chernozems artificially contaminated with heavy metals (Zn and Pb).

Materials and methods

The effect of different amendments on ordinary chernozem contaminated with Zn and Pb acetate salts was studied in a long-term 3-year field experiment. Glauconite, chalk, manure, and their combinations were chosen as ameliorating agents. Spring barley (Hordeum sativum) was used as test culture for three successive years. The heavy metal concentration in all the soil samples decomposed by HF?+?HClO₄ was determined by atomic absorption spectrophotometry (AAS). One normal concentration of CH₃COONH₄ at pH 4.8 was used to estimate the actual mobility of metals. The compounds of heavy metals extracted by 1 N HCl are regarded as mobile compounds. The concentration of metals in the plants was determined using the dry combustion in a mixture of HNO₃ and HCl at 450 °C. The content of heavy metals in extracts from soil and plant samples was determined by AAS.

Results and discussion

The content of weakly bound metal compounds increased upon the contamination of the soil with Pb and Zn salts, which led to a low quality of barley grown in these soils. Metal concentrations in the barley grain exceeded the maximum permissible concentrations (MPCs). The content of Zn and Pb in grains was higher than the MPC for at least 3 years after the soil pollution. The application of amendments significantly decreased the mobility of metals, and the simultaneous application of chalk and manure was most significant. The share of weakly bound metal compounds in the contaminated soils decreased to the level typical for the clean soils or even below.

Conclusions

The combined application of chalk and manure to Zn- and Pb-contaminated ordinary chernozems decreased the content of weakly bound metal compounds in the soil and lowered their concentrations in barley plants. The polyfunctional properties of the soil components with respect to their capacity for metal fixation were established. The decrease in the intensity of Zn accumulation in grains of barley shows the presence of a barrier at the root–stalk and stalk–grain interfaces.

     

What root traits determine grass resistance to phosphorus deficiency in production grassland?

Grasslands are a major form of agricultural land use worldwide. Current and future declines of phosphorus (P) inputs into production grasslands necessitate a shift towards selecting grass species based on high efficiency under suboptimal, rather than optimal P conditions. It is therefore imperative to identify key root traits that determine P acquisition of grasses in soils with a low P status. In a 9‐month greenhouse experiment, we grew eight common grass species and cultivars on a soil with a low P status and related root morphological traits to their performance under P‐limiting conditions. We applied (P1) or withheld (P0) P fertilization while providing adequate amounts of all other nutrients. Omitting P fertilization greatly reduced yield and nutrient acquisition for the various grass species. Biomass production differed significantly (P < 0.1%) among species and P fertilization treatments, varying from 17.1 to 72.1 g pot^?1 in the P0 treatment and from 33.4 to 85.8 g pot^?1 in the P1 treatment. Root traits were species‐specific and unresponsive to P fertilization, but overall we observed a trade‐off between root biomass and specific root length. Structural equation modeling identified total root length as key factor with respect to resistance to P deficiency, especially when roots explored the subsoil. Optimizing root length and subsoil exploration could be the key to maintaining high productivity of production grasslands with decreasing P availability. This is relevant for both plant breeding programs and for composing seed mixtures.     

Do elevated soil concentrations of metals affect the diversity and activity of soil invertebrates in the long‐term?

This study aimed to elucidate the response of diversity and activity of soil invertebrates to elevated soil metal concentrations that were a result of sewage sludge application. Field sampling of soil invertebrates was carried out from 2002 to 2004 at an experimental site established in 1982 to test the effects on crop production of metal contamination from sewage sludge applications with elevated concentrations of zinc (Zn), copper (Cu) and nickel (Ni) with certain treatments exceeding the current UK statutory limits for the safe use of sludge on land. At metal concentrations within the limits, none of the invertebrates sampled showed adverse effects on their abundance or overall community diversity (from Shannon–Weiner index). At concentrations above the limits, individual taxa showed sensitivity to different metals, but overall diversity was not affected. Earthworm abundance was significantly reduced at total Cu concentrations at and above 176 mg kg^?1, while nematode and enchytraeid abundances were sensitive to Cu and high Zn concentrations. Correspondingly, litter decomposition was lower in Zn and Cu treatments although there was no direct relationship between decomposition and soil invertebrate abundance or diversity. Such enduring changes in both soil biodiversity and biological activity around the current UK regulatory limits warrant further investigation to determine whether they indicate detrimental damage to soil functioning over the long‐term.     

How do enzymes catalysing soil nitrogen transformations respond to changing temperatures?

Biological processes in soils are regulated in part by soil temperature, and there is currently considerable interest in obtaining robust information on the temperature sensitivity of carbon cycling process. However, very little comparable information exists on the temperature regulation of specific nitrogen cycling processes. This paper addresses this problem by measuring the temperature sensitivity of nitrogen cycling enzymes in soil. A grassland soil was incubated over a range of temperatures (?2 to 21 °C) reflecting 99 % of the soil temperature range during the previous 50 years at the site. After 7 and 14 days of incubation, potential activities of protease, amidase and urease were determined. Activities of protease and urease were positively related to temperature (activation energy; E _a?=?49.7 and 73.4 kJ mol^?1, respectively, and Q ₁₀?=?2.97 and 2.78, respectively). By contrast, amidase activity was relatively insensitive to temperature, but the activity was significantly increased after the addition of glucose. This indicated that there was a stoichiometric imbalance with amidase activity only being triggered when there was a supply of exogenous carbon. Thus, carbon supply was a greater constraint to amidase activity than temperature was in this particular soil.     

A future for soil ecology ? Connecting the system levels: moving from genomes to ecosystems: Opening Lecture to the XIII ICSZ “Biodiversity of soil organisms and ecosystem functioning”

As an introduction to the XIII ICSZ “Biodiversity of soil organisms and ecosystem functioning” the question is raised what contribution soil ecology has made to general ecology. Although the appearance of soil ecological papers in general ecological journals is limited, soil ecologists have had a major contribution to especially functional aspects of ecology like nutrient release and energy turnover mechanisms, perhaps partly due to the applied character of soil ecology. As a way forward it is suggested to unify further work and scientific discussions according to five research themes: 1. Combined spatial and temporal heterogeneity; 2. Scaling up from individual mobility via distribution patterns to bio-geography; 3. Structural and functional biodiversity: from gene- to ecosystem level; 4. Nutrient cycling/energy transfer at the micro- to macro-level; 5. Adaptability from bacteria to ecosystems: is there a mutual mechanism connecting genetic variation with ecosystemś adaptive mechanisms?     

Do model choice and sample ratios separately or simultaneously influence soil organic matter prediction?

This study was performed to examine the separate and simultaneous influence of predictive models’ choice alongside sample ratios selection in soil organic matter (SOM). The research was carried out in northern Morocco, characterized by relatively cold weather and diverse geological conditions. The dataset herein used accounted for 1591 soil samples, which were randomly split into the following ratios: 10% (～150 sample ratio), 20% (～250 sample ratio), 35% (～450 sample ratio), 50% (～600 sample ratio) and 95% (～1200 sample ratio). Models herein involved were ordinary kriging (OK), regression kriging (RK), multiple linear regression (MLR), random forest (RF), quantile regression forest (QRF), Gaussian process regression (GPR) and an ensemble model. The findings in the study showed that the accuracy of SOM prediction is sensitive to both predictive models and sample ratios. OK combined with 95% sample ratio performed equally to RF in conjunction with all the sample ratios, as the latter did not show much sensitivity to sample ratios. ANOVA results revealed that RF with a ～10% sample ratio could also be optimum for predicting SOM in the study area. In conclusion, the findings herein reported could be instrumental for producing cost-effective detailed and accurate spatial estimation of SOM in other sites. Furthermore, they could serve as a baseline study for future research in the region or elsewhere. Therefore, we recommend conducting series of simulation of all possible combinations between various predictive models and sample ratios as a preliminary step in soil organic matter prediction.