Influence of organic and mineral amendments on microbial soil properties and processes

Microbial diversity in soils is considered important for maintaining sustainability of agricultural production systems. However, the links between microbial diversity and ecosystem processes are not well understood. This study was designed to gain better understanding of the effects of short-term management practices on the microbial community and how changes in the microbial community affect key soil processes. The effects of different forms of nitrogen (N) on soil biology and N dynamics was determined in two soils with organic and conventional management histories that varied in soil microbial properties but had the same fertility. The soils were amended with equal amounts of N (100 kg ha⁻¹) in organic (lupin, Lupinus angustifolius L.) and mineral form (urea), respectively. Over a 91-day period, microbial biomass C and N, dehydrogenase enzyme activity, community structure of pseudomondas (sensu stricto), actinomycetes and α proteobacteria (by denaturing gradient gel electrophoresis (DGGE) following PCR amplification of 16S rDNA fragments) and N mineralisation were measured. Lupin amendment resulted in a two- to five-fold increase in microbial biomass and enzyme activity, while these parameters did not differ significantly between the urea and control treatments. The PCR–DGGE analysis showed that the addition of mineral and organic compounds had an influence on the microbial community composition in the short term (up to 10 days) but the effects were not sustained over the 91-day incubation period. Microbial community structure was strongly influenced by the presence or lack of substrate, while the type of amendment (organic or mineral) had an effect on microbial biomass size and activity. These findings show that the addition of green manures improved soil biology by increasing microbial biomass and activity irrespective of management history, that no direct relationship existed among microbial structure, enzyme activity and N mineralisation, and that microbial community structure (by PCR–DGGE) was more strongly influenced by inherent soil and environmental factors than by short-term management practices.     

Impact of bovine urine deposition on soil microbial activity,biomass, and community structure

Nitrogen (N) from urine excreted by grazing animals can be transformed into N compounds that have detrimental effects on the environment. These include nitrate, which can cause eutrophication of waterways, and nitrous oxide, which is a greenhouse gas. Soil microbes mediate all of these N transformations, but the impact of urine on microbes and how initial soil conditions and urine chemical composition alter their responses to urine are not well understood. This study aimed to determine how soil inorganic N pools, nitrous oxide fluxes, soil microbial activity, biomass, and the community structure of bacteria containing amoA (nitrifiers), nirK, and nirS (denitrifiers) genes responded to the addition of urine over time. Bovine urine containing either a high (15.0 g K⁺ l^?1) or low salt content (10.4 g K⁺ l^?1) was added to soil cores at either low or high moisture content (hereafter termed dry and wet soil respectively; 35% or 70% water-filled pore space after the addition of urine). Changes in soil conditions, inorganic N pools, nitrous oxide fluxes, and the soil microbial community were then measured 1, 3, 8, 15, 29 and 44 days after urine addition. Urine addition increased soil ammonium concentrations by up to 2 mg g d.w.^?1, soil pH by up to 2.7 units, and electrical conductivity (EC) by 1.0 and 1.6 dS m^?1 in the low and high salt urine treatments respectively. In response, nitrate accumulation and nitrous oxide fluxes were lower in dry compared to wet urine-amended soils and slightly lower in high compared to low salt urine-amended soils. Nitrite concentrations were elevated (>3 μg g d.w.^?1) for at least 15 days after urine addition in wet urine-amended soils, but were only this high in the dry urine-amended soils for 1 day after the addition of urine. Microbial biomass was reduced by up to half in the wet urine-amended soils, but was largely unaffected in the dry urine-amended soils. Urine addition affected the community structure of ammonia-oxidising and nitrite-reducing bacteria; this response was also stronger and more persistent in wet than in dry urine-amended soils. Overall, the changes in soil conditions caused by the addition of urine interacted to influence microbial responses, indicating that the effect of urine on soil microbes is likely to be context-dependent.     

The effects of fresh and stabilized pruning wastes on the biomass,structure and activity of the soil microbial community in a semiarid climate

The incorporation of organic amendments from pruning waste into soil may help to mitigate soil degradation and to improve soil fertility in semiarid ecosystems. However, the effects of pruning wastes on the biomass, structure and activity of the soil microbial community are not fully known. In this study, we evaluate the response of the microbial community of a semiarid soil to fresh and composted vegetal wastes that were added as organic amendments at different doses (150 and 300 t ha⁻¹) five years ago. The effects on the soil microbial community were evaluated through a suite of different chemical, microbiological and biochemical indicators, including enzyme activities, community-level physiological profiles (CLPPs) and phospholipid fatty acid analysis (PLFA). Our results evidenced a long-term legacy of the added materials in terms of soil microbial biomass and enzyme activity. For instance, cellulase activity reached 633 μg and 283 μg glucose g⁻¹ h⁻¹ in the soils amended with fresh and composted waste, respectively. Similarly, bacterial biomass reached 116 nmol g⁻¹ in the soil treated with a high dose of fresh waste, while it reached just 66 nmol g⁻¹ in the soil amended with a high dose of composted waste. Organic amendments produced a long-term increase in microbiological activity and a change in the structure of the microbial community, which was largely dependent on the stabilization level of the pruning waste but not on the applied dose. Ultimately, the addition of fresh pruning waste was more effective than the application of composted waste for improving the microbiological soil quality in semiarid soils.     

Microbial activity,community structure and potassium dynamics in rhizosphere soil of soybean plants treated with glyphosate

With the advent of glyphosate [N-(phosphonomethyl)glycine] tolerant crops, soils have now been receiving repeated applications of the herbicide for over 10 years in the Midwestern USA. There is evidence that long-term use of glyphosate can cause micronutrient deficiency but little is known about plant potassium (K) uptake interactions with glyphosate. The repeated use of glyphosate may create a selection pressure in soil microbial communities that could affect soil K dynamics and ultimately K availability for crops. Therefore, the objectives of this study were to characterize the effect of foliar glyphosate applied to GR (glyphosate resistant) soybeans on: (1) rhizosphere microbial community profiles using ester linked fatty acid methyl ester (EL-FAME) biomarkers, (2) exchangeable, non-exchangeable, and microbial K in the rhizosphere soil, and (3) concentrations of soybean leaf K. A greenhouse study was conducted in a 2 × 2 × 3 factorial design with two soil treatments (with or without long-term field applications of glyphosate), two plant treatments (presence and absence of soybean plants), and three rates of glyphosate treatments (0×, 1× at 0.87, and 2× at 1.74 kg ae ha^?1, the recommended field rate). After each glyphosate application, rhizosphere soils were sampled and analyzed for microbial community structure using ester linked fatty acid methyl ester biomarkers (EL-FAME), and exchangeable, plant tissue and microbial biomass K. Glyphosate application caused a significant decrease in the total microbial biomass in soybean rhizosphere soil that had no previous exposure to glyphosate, at 7 days after glyphosate application. However, no significant changes were observed in the overall microbial community structure. In conclusion, the glyphosate application lowered the total microbial biomass in the GR soybean rhizosphere soil that had no previous exposure to glyphosate, at 7 days after glyphosate application; caused no changes in the microbial community structure; and did not reduce the plant available K (soil exchangeable or plant tissue K).     

Effects of Zn enriched sewage sludge on microbial activities and biomass in soil

An incubation study in closed static microcosms was performed to elucidate Zn effects on N mineralisation in relation to other microbial activities and biomass in a sandy soil. Sewage sludge equivalent to 25 t ha⁻¹ was enriched with five different rates of Zn to add concentrations between 50 and 800 μg Zn g⁻¹ soil. All microbial indices were increasingly depressed with increasing Zn concentration of the sewage sludge, but they were affected with different intensity: Zn had especially large effects on CO₂ production and qCO₂, moderate effects on N mineralisation and relatively small effects on protease activity, biomass C and arginine ammonification.     

Soil microbial community responses to dairy manure or ammonium nitrate applications

Soil management practices that result in increased soil C also impact soil microbial biomass and community structure. In this study, the effects of dairy manure applications and inorganic N fertilizer on microbial biomass and microbial community composition were determined. Treatments examined were a control with no nutrient additions (CT), ammonium nitrate at 218 kg N ha⁻¹ (AN), and manure N rates of 252 kg manure-N ha⁻¹ (LM) and 504 kg manure-N ha⁻¹ (HM). All plots were no-till cropped to silage corn (Zea mays, L. Merr) followed by a Crimson clover (Trifolium incarnatum, L.)/annual ryegrass (Lolium multiflorum, Lam.) winter cover crop. Treatments were applied yearly, with two-thirds of the N applied in late April or early May, and the remainder applied in September. Soil samples (0–5, 5–10, and 10–15 cm) were taken in March 1996, prior to the spring nutrient application. Polar lipid fatty acid (PLFA) analysis was used to assess changes in microbial biomass and community structure. Significantly greater soil C, N and microbial biomass in the 0–5 cm depth were observed under both manure treatments than in the CT and AN treatments. There was also a definable shift in the microbial community composition of the surface soils (0–5cm). Typical Gram-negative bacteria PLFA biomarkers were 15 and 27% higher in the LM and HM treatments than in the control. The AN treatment resulted in a 15% decrease in these PLFA compared with the control. Factor analysis of the polar lipid fatty acid profiles from all treatments revealed that the two manure amendments were correlated and could be described by a single factor comprised of typical Gram-negative bacterial biomarkers. The AN treatments from all three depths were also correlated and were described by a second factor comprised of typical Gram-positive bacterial biomarkers. These results demonstrate that soil management practices, such as manuring, that result in accumulations of organic carbon will result in increased microbial biomass and changes in community structure.     

Turnover of low molecular weight dissolved organic C (DOC) and microbial C exhibit different temperature sensitivities in Arctic tundra soils

Polar ecosystems are currently experiencing some of the fastest rates of climate warming. An increase in soil temperature in High Arctic regions may stimulate soil permafrost melting and microbial activity, thereby accelerating losses of greenhouse gases. It is therefore important to understand the factors regulating the rates of C turnover in polar soils. Consequently, our aims were to: (1) assess the concentration of low molecular weight (MW) dissolved organic carbon (DOC) in soil, (2) to investigate the temperature-dependent turnover of specific low MW compounds, and (3) to analyse the influence of substrate concentration on C cycling. Microbial mineralisation of labile low MW DOC in two High Arctic tundra soils was investigated using soil solutions spiked with either ¹⁴C-labelled glucose or amino acids. Spiked solutions were added to the top- and sub-soil from two ecosystem types (lichen and Carex dominated tundra), maintained at three temperatures (4–20 °C), and their microbial mineralisation kinetics monitored. ¹⁴CO₂ evolution from the tundra soils in response to ¹⁴C-glucose and -amino acid addition could best be described by a double first order exponential kinetic equation with rate constants k₁ and k₂. Both forms of DOC had a short half-life (t_1/2) in the pool of microbial respiratory substrate (t_1/2 = 1.07 ± 0.10 h for glucose and 1.63 ± 0.14 h for amino acids; exponential coefficient k₁ = 0.93 ± 0.07 and 0.64 ± 0.06 h^?1 respectively) whilst the second phase of mineralisation, assumed to be C that had entered the microbial biomass, was much slower (average k₂ = 1.30 × 10^?3 ± 0.49 × 10^?4 h^?1). Temperature had little effect on the rate of mineralisation of ¹⁴C used directly as respiratory substrate. In contrast, the turnover rate of the ¹⁴C immobilized in the microbial biomass prior to mineralisation was temperature sensitive (k₂ values of 0.99 × 10^?3 h^?1 and 1.66 × 10^?3 h^?1 at 4 and 20 °C respectively). Concentration-dependent glucose and amino acid mineralisation kinetics of glucose and amino acids (0–10 mM) were best described using Michaelis–Menten kinetics; there was a low affinity for both C substrates by the microbial community (K_m = 4.07 ± 0.41 mM, V_max = 0.027 ± 0.005 mmol kg^?1 h^?1). In conclusion, our results suggest that in these C limiting environments the flux of labile, low MW DOC through the soil solution is extremely rapid and relatively insensitive to temperature. In contrast, the turnover of C incorporated into higher molecular weight microbial C pools appears to show greater temperature sensitivity.     

Phosphate additions have no effect on microbial biomass and activity in a northern hardwood forest

High rates of atmospheric nitrogen (N) deposition have raised questions about shifting patterns of nutrient limitation in northern hardwood forests. Of particular interest is the idea that increased supply of N may induce phosphorus (P) limitation of plant and microbial processes, especially in acid soils where P sorption by Al is high. In this study, we established field plots and plant-free laboratory mesocosms with P and Ca additions to test the hypotheses that 1) microbial biomass and activity are limited by P in the northern hardwood forest soils at the Hubbard Brook Experimental Forest in NH USA; 2) elevated Ca increases inherent P availability and therefore reduces any effects of added P and 3) P effects are more marked in the more carbon (C) rich Oie compared to the Oa horizon. Treatments included P addition (50 kg P ha⁻¹), Ca addition (850 kg Ca ha⁻¹) and Ca + P addition (850 kg Ca ha⁻¹ and 50 kg P ha⁻¹). The P treatments increased resin-available P levels and reduced phosphatase activity, but had no effect on microbial biomass C, microbial respiration, C metabolizing enzymes, potential net N mineralization and nitrification in the Oie or Oa horizon of either field plots or plant free mesocosms, in either the presence or absence of Ca. Total, prokaryote, and eukaryote PLFA were reduced by P addition, possibly due to reductions in mycorrhizal fungal biomass. These results suggest that increased N deposition and acidification have not created P limitation of microbial biomass and activity in these soils.     

Microbial biomass and activity in salt affected soils under arid conditions

The effects of salinity on the size, activity and community structure of soil microorganisms in salt affected arid soils were investigated in Shuangta region of west central Anxi County, Gansu Province, China. Eleven soils were selected which had an electrical conductivity (EC) gradient of 0.32–23.05 mS cm⁻¹. There was a significant negative exponential relationship between EC and microbial biomass C, the percentage of soil organic C present as microbial biomass C, microbial biomass N, microbial biomass N to total N ratio, basal soil respiration, fluorescein diacetate (FDA) hydrolysis rate, arginine ammonification rate and potentially mineralizable N. The exponential relationships with EC demonstrate the highly detrimental effect that soil salinity had on the microbial community. In contrast, the metabolic quotient (qCO₂) was positively correlated with EC, and a quadratic relationship between qCO₂ and EC was observed. There was an inverse relationship between qCO₂ and microbial biomass C. These results indicate that higher salinity resulted in a smaller, more stressed microbial community which was less metabolically efficient. The biomass C to biomass N ratio tended to be lower in soils with higher salinity, reflecting the bacterial dominance in microbial biomass in saline soils. Consequently, our data suggest that salinity is a stressful environment for soil microorganisms.     

Effects of alternative management practices on the economics,energy and GHG emissions of a wheat–pea cropping system in the Canadian prairies

In recent years alternative farming practices have received considerable attention from Canadian producers as a means to improve their net return from grain and oilseed production. Enhancing the efficiency of nitrogen fertilizer use, including a pulse crop in the rotation, reducing tillage and pesticide use are seen as viable options to reduce reliance on fossil fuel, lower input costs and decrease the risk of soil, air and water degradation. The objective of this study was to determine the effects of 16 alternative management practices for a 2-year spring wheat (Triticum aestivum L.)–field pea (Pisum sativum L.) rotation on economic returns, non-renewable energy use efficiency, and greenhouse gas emissions. The alternative management methods for wheat consisted of a factorial combination of high vs. low soil disturbance one pass seeding, four nitrogen (N) fertilizer rates (20 kg N ha^?1, 40 kg N ha^?1, 60 kg N ha^?1 and 80 kg N ha^?1), and recommended vs. reduced rates of in-crop herbicide application. Alternative management practices for field pea were high vs. low soil disturbance one pass seeding. The resulting 16 cropping systems were evaluated at the whole farm level based on 4 years (two rotation cycles) of data from field experiments conducted on two Orthic Black Chernozem soils (clay loam and loam textures) in Manitoba, Canada. The highest net returns on the clay loam soil were for the high disturbance system with 60 kg N ha^?1 applied to wheat and the recommended rates of in-crop herbicides. The lowest application rate of N, together with low disturbance seeding, provided the highest economic returns on the loam soil. Energy use efficiency was highest for the lowest rate of N application for both tillage systems. The highest rate of N fertilizer and recommended rates of in-crop herbicide produced little additional yield response, lower net returns, and higher GHG emissions. An increase in N fertilizer application from 20 kg ha^?1 to 80 kg ha^?1 increased whole farm energy requirements by about 40%, while reducing herbicide rates had negligible effects on grain yields and total energy input. Overall, as N fertilizer rate increased, the associated GHG emissions were not offset by an increase in carbon retained in the above-ground crop biomass. Moderate to high soil test NO₃-N levels at experimental sites reduced the potential for positive yield responses to N fertilizer in this study, thus minimizing the economic benefits derived from N fertilizer application.     

Identifying indicators of C and N cycling in a clayey Ultisol under different tillage and uses in winter

Although tropical and subtropical environments permit two cropping cycles per year, maintaining adequate mulching on the soil surface remains a challenge. In some cases, leaving soils fallow during the winter as an agricultural practice to control pathogens contributes to reduce soil mulching. The aim of this study was to assess attributes associated with C and N cycling in a soil under conventional and no-tillage management, with contrasting uses in winter: black oats (Avena strigosa Schreb) as cover crop or fallow. No-tillage increased total C and N, irrespective the winter crop. Cropping black oats under no-tillage resulted in more microbial biomass C and N, and glutaminase activity (15.2%, 65.2%, and 24%, respectively) than no-tillage under fallow. Under conventional tillage, winter cropping did not affect the attributes under study. Available P was higher in the no-tillage system (9.2–12.3 mg kg⁻¹), especially when cropped with black oats, than in the conventional tillage system (4.8–6.6 mg kg⁻¹). A multivariate analysis showed strong relationships between soil microbiological and chemical attributes in the no-tillage system, especially when cropped with black oats. Soil pH, dehydrogenase and acid phosphatase activities were the most effective at separating the soil use in winter. Microbial N, total N, microbial to total N ratio, available P, metabolic quotient (qCO₂), and glutaminase activity were more effective at separating soil management regimes. The no-tillage system in association with winter oat cropping stimulated the soil microbial community, carbon and nutrient cycling, thereby helping to improve the sustainability of the cropping system.     

Observed and modelled soil carbon and nitrogen changes after planting a Pinus radiata stand onto former pasture

After reforesting pasture land, it is often observed that soil carbon stocks decrease. The present work reports findings from a site near Canberra, Australia, where a pine forest (Pinus radiata) was planted onto a former unimproved pasture site. We report a number of detailed observations seeking to understand the basis of the decline in soil C stocks. This is supported by simulations using the whole-ecosystem carbon and nitrogen cycling model CenW 3.1. The model indicated that over the first 18 years after forest establishment, the site lost about 5.5 t C ha^?1 and 588 kgN ha^?1 from the soil. The C:N ratio of soil organic matter did not change in a systematic manner over the observational period. Carbon and nitrogen stocks contained in the biomass of the 18-year old pine stand exceeded that of the pasture by 88 t C ha^?1 and 393 kgN ha^?1. An additional 6.1 t C ha^?1 and 110 kgN ha^?1 accumulated in above-ground litter. These changes, together with the vertical distribution of carbon and nitrogen in the soil, agreed well with the observation at the site. It was assumed that over 18 years, there was also a loss of 86 kgN ha^?1 from the ecosystem because of normal gaseous losses during nitrogen turn-over and a small amount of nitrogen leaching. Those losses could not be replenished in the pine system without symbiotic biological nitrogen fixation, and there were no fertiliser additions. A simple mass balance approach indicated that the amount of nitrogen accumulating in plant biomass and the litter layer plus the assumed nitrogen loss from the site matched the amount of nitrogen lost from the soil organic nitrogen pool. This reduction in soil nitrogen, together with an unchanged C:N ratio, provided a simple and internally consistent explanation for the observed reduction of soil carbon after reforestation. It supports the general notion that trends in soil carbon upon land-use change can often be controlled by the possible fates of available soil nitrogen.     

Microbial synthesis of organic and condensed forms of phosphorus in acid and calcareous soils

The potential for microorganisms to affect the quantity and quality of organic and condensed forms of phosphorus (P) in soils was investigated by repeated addition of different carbon sources (glucose, starch, cellulose; 2.5 g C kg^?1) with or without inorganic P (50 mg P kg^?1) to acid and calcareous soils which were either natural soils or clay–sand mixtures free of organic matter. Forms of P after five amendments and subsequent incubation periods of 5 weeks each were analyzed by ³¹P solution nuclear magnetic resonance (NMR) spectroscopy, and the microbial community composition was assessed by selective plate counts and fatty acid methyl ester (FAME) analysis. All carbon additions induced a redistribution of P from inorganic to organic and condensed forms, which was only little affected by the addition of inorganic P. Compared to non-carbon-amended controls, the greatest increase (7–38 mg P kg^?1) in organic P was observed in the monoester region. In the acid clay–sand mixture, there was a large accumulation of pyrophosphate (101 mg P kg^?1) after glucose addition and smaller accumulations (6–25 mg P kg^?1) after addition of starch and cellulose. Carbon additions increased the microbial biomass in all cases and except in the natural calcareous soil also the proportion of fungi. Redundancy analysis with Monte Carlo permutation tests revealed that for carbon-amended soils, the microbial community composition was more strongly influenced by soil type than by carbon source. Pyrophosphate was positively related to fungi, and diester P was positively related to soil pH. A large proportion of organic and condensed forms of P may still have been in microbial cells at the time of extraction. We have shown that soil organic P consists of some discrete and simple compounds along with some more complex forms, and that organic P recently synthesized by microbes consists almost exclusively of and thus is a likely source for the simple compounds found in natural soils.     

Biochar soil amendment increased bacterial but decreased fungal gene abundance with shifts in community structure in a slightly acid rice paddy from Southwest China

Biochar’s role on greenhouse gas emission and plant growth has been well addressed. However, there have been few studies on changes in soil microbial community and activities with biochar soil amendment (BSA) in croplands. In a field experiment, biochar was amended at rates of 0, 20 and 40 t ha⁻¹ (C0, C1 and C2, respectively) in May 2010 before rice transplantation in a rice paddy from Sichuan, China. Topsoil (0–15 cm) was collected from the rice paddy while rice harvest in late October 2011. Soil physico-chemical properties and microbial biomass carbon (MBC) and nitrogen (MBN) as well as selected soil enzyme activities were determined. Based on 16S rRNA and 18S rRNA gene, bacterial and fungal community structure and abundance were characterized using terminal-restriction fragment length polymorphism (T-RFLP) combined with clone library analysis, denaturing gradient gel electrophoresis (DGGE) and quantitative real-time PCR assay (qPCR). Contents of SOC and total N and soil pH were increased but bulk density decreased significantly. While no changes in MBC and MBN, gene copy numbers of bacterial 16S rRNA was shown significantly increased by 28% and 64% and that of fungal 18S rRNA significantly decreased by 35% and 46% under BSA at 20 and 40 t ha⁻¹ respectively over control. Moreover, there was a significant decrease by 70% in abundance of Methylophilaceae and of Hydrogenophilaceae with an increase by 45% in Anaerolineae abundance under BSA at 40 t ha⁻¹ over control. Whereas, using sequencing DGGE bands of fungal 18S rRNA gene, some bands affiliated with Ascomycota and Glomeromycota were shown inhibited by BSA at rate of 40 t ha⁻¹. Significant increases in activities of dehydrogenase, alkaline phosphatases while decreased β-glucosidase were also observed under BSA. The results here indicated a shift toward a bacterial dominated microbial community in the rice paddy with BSA.     

Changes in enzyme activities and microbial biomass after “in situ” remediation of a heavy metal-contaminated soil

Microbial properties such as microbial biomass carbon (MBC), arylsulfatase, β-glucosidase and dehydrogenase activities, and microbial heterotrophic potential, together with several chemical properties such as pH, CaCl₂ soluble heavy metal concentrations, total organic carbon and hydrosoluble carbon were measured to evaluate changes in soil quality, after “in situ” remediation of a heavy metal-contaminated soil from the Aznalcóllar mine accident (Southern Spain, 1998). The experiment was carried out using containers, filled with soil from the affected area. Four organic amendments (a municipal waste compost, a biosolid compost, a leonardite and a litter) and an inorganic amendment (sugarbeet lime) were mixed with the top soil at the rate of 100 Mg ha⁻¹. Unamended soil was used as control. Agrostis stolonifera L. was sown in the containers. The soil was sampled twice: one month and six months after amendment application. In general, these amendments improved the soil chemical properties: soil pH, total organic carbon and hydrosoluble carbon increased in the amended soils, while soluble heavy metal concentrations diminished. At the same time, higher MBC, enzyme activities and maximum rate of glucose mineralization values were found in the organically amended soils. Plant cover was also important in restoring the soil chemical and microbial properties in all the soils, but mainly in those that were not amended organically. As a rule, remediation measures improved soil quality in the contaminated soils.     

Soil application of meat and bone meal. Short-term effects on mineralization dynamics and soil biochemical and microbiological properties

Meat and bone meal (MBM) utilization for animal production was banned in the European Union since 2000 as a consequence of the appearance of transmissive spongiform encephalopathies. Soil application could represent a lawful and effective strategy for the sustainable recycling of MBM due to its relevant content of nutritive elements and organic matter. The effectiveness of MBM as organic fertilizer needs to be thoroughly investigated since there is a lack of knowledge about the mineralization dynamics of MBM in soil and the impact of such residues, in particular the high content of lipids, on soil biochemical and microbiological properties. For this aim, a defatted (D) and the correspondent non-defatted (ND) MBM were added at two rates (200 and 400 kg N ha^?1) to two different moist soils and incubated at 15 and 20 °C for 14 d. MBM mineralization dynamics was studied by measuring CO₂ evolution. Water extractable organic C, K₂SO₄-extractable NO₃^? and NH₄⁺, microbial biomass ninhydrin-reactive N, enzymatic activities (FDA, urease, protease, alkaline phosphatase) and microbial composition (aerobic and anaerobic bacteria, fungi) were measured 2 and 14 d after MBM addition to the soil. The rate of CO₂ evolution showed a maximum 2–3 d after the addition of MBM, followed by a decrease approaching the control. MBM mineralization was fast with, on average, 54% of total CO₂ evolved in the first 4 d of incubation at 20 °C. The percentage of added C which was evolved as CO₂ at the end of the incubation period ranged between 8% and 16% and was affected by temperature, soil type and MBM treatment (ND > D). Soil amendment with MBM caused a noteworthy increase in both extractable NH₄⁺ and NO₃^? (about 50% of added N) which was higher for ND. The addition of MBM also enhanced microbial content and activity. Microbial biomass increased as a function of the rate of application and was higher for ND with respect to D. The increase in numbers of aerobic and anaerobic bacteria and fungi caused by MBM addition was, in general, more pronounced with ND. Enzymatic activity in amended soils showed an enhancement in nutrient availability and element cycling. At the rate of application of present work, lipids did not cause adverse effects on soil microorganisms.The potential of MBM as effective organic fertilizer was supported by the large increase in available N and the enhancement of the size and activity of soil microorganisms.     

Characterizing the relationships between soil organic matter components and microbial function and composition along a tillage disturbance gradient

We studied the effect of no-till (disc seeder), conventional-till (tine scarifier+disc seeder) and rotary-till (rotary hoe+disc seeder) management on soil organic matter (SOM) components, rates of carbon (C) and nitrogen (N) cycling, substrate utilization and microbial community composition. We hypothesized that labile SOM fractions are sensitive to changes in tillage techniques and, in turn mediate any tillage-induced changes in microbial function and composition. A replicated field site was established in May 1998 in the semi-arid agricultural region of Western Australia and soils were collected in September 2004. We found soil pH varied between different tillage techniques as an initial lime application was mixed to deeper soil depths in rotary-till soil than no-till and conventional-till soil. Total-C was greater in surface soil and lower in subsurface soil from no-till and conventional-till plots than from rotary-till plots, but there was no effect of tillage technique on total-C when averaged across soil depths. Light (specific density <1.0 g cm^?3) fraction organic matter (LFOM), dissolved organic matter (DOM) and microbial biomass (MB) C and N pools, and rates of C and N cycling all tended to decrease with soil depth. In general, LFOM-C and N, dissolved organic C (DOC) and microbial biomass carbon (MB-C), soil respiration, cellulase activity, gross immobilization rates were positively correlated (r>0.50) and were greater in no-till and conventional-till soil than rotary-till soil both within, and across soil depths. These soil variables generally increased (r>0.5) with increasing soil pH. Dissolved organic N and gross N mineralization were positively correlated (r>0.90) but neither was affected by tillage techniques. No-till soil had greater utilization of carboxylic acids and lower utilization of amino acids and carbohydrates than conventional-till and rotary-till soil; surface soil also had greater utilization of carboxylic acids than subsurface soil. In turn, substrate utilization differed between soil depths, and between no-till soil and conventional-till and rotary-till soil; these differences were correlated with soil pH, total-N, DOC, LFOM-N and microbial biomass nitrogen (MB-N). Bacterial and fungal biomasses generally decreased with soil depth and were greater in no-till and conventional-till soil than rotary-till soil. Microbial community composition differed between all tillage techniques and soil depths; these differences were correlated with soil textural classes, soil pH, and total, LFOM, DOM and microbial C and N pools. These results indicate that most tillage-induced changes to soil properties were associated with the greater soil disturbance under rotary-till than under no-till or conventional-till management. Our results indicate that tillage-induced changes to soil pH, and LFOM, DOM and microbial biomass pools are likely to be important regulators of the rates of C and N cycling, substrate utilization and microbial community composition in this coarse textured soil.     

Recovery of soil organic matter,organic matter turnover and nitrogen cycling in a post-mining forest rehabilitation chronosequence

Recovery of soil organic matter, organic matter turnover and mineral nutrient cycling is critical to the success of rehabilitation schemes following major ecosystem disturbance. We investigated successional changes in soil nutrient contents, microbial biomass and activity, C utilisation efficiency and N cycling dynamics in a chronosequence of seven ages (between 0 and 26 years old) of jarrah (Eucalyptus marginata) forest rehabilitation that had been previously mined for bauxite. Recovery was assessed by comparison of rehabilitation soils to non-mined jarrah forest references sites. Mining operations resulted in significant losses of soil total C and N, microbial biomass C and microbial quotients. Organic matter quantity recovered within the rehabilitation chronosequence soils to a level comparable to that of non-mined forest soil. Recovery of soil N was faster than soil C and recovery of microbial and soluble organic C and N fractions was faster than total soil C and N. The recovery of soil organic matter and changes to soil pH displayed distinct spatial heterogeneity due to the surface micro-topography (mounds and furrows) created by contour ripping of rehabilitation sites. Decreases in the metabolic quotient with rehabilitation age conformed to conceptual models of ecosystem energetics during succession but may have been more indicative of decreasing C availability than increased metabolic efficiency. Net ammonification and nitrification rates suggested that the low organic C environment in mound soils may favour autotrophic nitrifier populations, but the production of nitrate (NO₃^?) was limited by the low gross N ammonification rates (≤1 μg N g^?1 d^?1). Gross N transformation rates in furrow soils suggested that the capacity to immobilise N was closely coupled to the capacity to mineralise N, suggesting NO₃^? accumulation in situ is unlikely. The C:N ratio of the older rehabilitation soils was significantly lower than that of the non-mined forest soils. However, variation in ammonification rates was best explained by C and N quantity rather than C:N ratios of whole soil or soluble organic matter fractions. We conclude that the rehabilitated ecosystems are developing a conservative N cycle as displayed by non-mined jarrah forests. However, further investigation into the control of nitrification dynamics, particularly in the event of further ecosystem disturbance, is warranted.     

Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil

The substrate availability for microbial biomass (MB) in soil is crucial for microbial biomass activity. Due to the fast microbial decomposition and the permanent production of easily available substrates in the rooted top soil mainly by plants during photosynthesis, easily available substrates make a very important contribution to many soil processes including soil organic matter turnover, microbial growth and maintenance, aggregate stabilization, CO₂ efflux, etc. Naturally occurring concentrations of easily available substances are low, ranging from 0.1 μM in soils free of roots and plant residues to 80 mM in root cells. We investigated the effect of adding ¹⁴C-labelled glucose at concentrations spanning the 6 orders of magnitude naturally occurring concentrations on glucose uptake and mineralization by microbial biomass. A positive correlation between the amount of added glucose and its portion mineralized to CO₂ was observed: After 22 days, from 26% to 44% of the added 0.0009 to 257 μg glucose C g^?1 soil was mineralized. The dependence of glucose mineralization on its amount can be described with two functions. Up to 2.6 μg glucose C g^?1 soil (corresponds to 0.78% of initial microbial biomass C), glucose mineralization increased with the slope of 1.8% more mineralized glucose C per 1 μg C added, accompanied by an increasing incorporation of glucose C into MB. An increased spatial contact between micro-organisms and glucose molecules with increasing concentration may be responsible for this fast increase in mineralization rates (at glucose additions <2.6 μg C g^?1). At glucose additions higher than 2.6 μg C g^?1 soil, however, the increase of the glucose mineralization per 1 μg added glucose was much smaller as at additions below 2.6 μg C g^?1 soil and was accompanied by decreasing portions of glucose ¹⁴C incorporated into microbial biomass. This supports the hypothesis of decreasing efficiency of glucose utilization by MB in response to increased substrate availability in the range 2.6–257 μg C g^?1 (=0.78–78% of microbial biomass C). At low glucose amounts, it was mainly stored in a chloroform-labile microbial pool, but not readily mineralized to CO₂. The addition of 257 μg glucose C g^?1 soil (0.78 μg C glucose μg^?1 C micro-organisms) caused a lag phase in mineralization of 19 h, indicating that glucose mineralization was not limited by the substrate availability but by the amount of MB which is typical for 2nd order kinetics.     

Soil enzyme activities,microbial community composition and function after 47 years of continuous green manuring

Green manuring practices can influence soil microbial community composition and function and there is a need to investigate the influence compared with other types of organic amendment. This study reports long-term effects of green manure amendments on soil microbial properties, based on a field experiment started in 1956. In the experiment, various organic amendments, including green manure, have been applied at a rate of 4 t C ha⁻¹ every second year. Phospholipid fatty acid analysis (PLFA) indicated that the biomass of bacteria, fungi and total microbial biomass, but not arbuscular mycorrhizal (AM) fungi, generally increased due to green manuring compared with soils receiving no organic amendments. Some differences in abundance of different microbial groups were also found compared with other organic amendments (farmyard manure and sawdust) such as a higher fungal biomass and consequently a higher fungal/bacterial ratio compared with amendment with farmyard manure. The microbial community composition (PLFA profile) in the green manure treatment differed from the other treatments, but there was no effect on microbial substrate-utilization potential, determined using the Biolog EcoPlate. Protease and arylsulphatase activities in the green manure treatment were comparable to a mineral fertilized treatment receiving no additional C, whereas acid phosphatase activity increased. It can be concluded that green manuring had a beneficial impact on soil microbial properties, but differed in some aspects to other organic amendments which might be attributed to differences in quality of the amendments.