Effect of forest and soil type on microbial biomass carbon and respiration

The aim of study was to evaluate the variation of soil microbial biomass carbon (C_mic) and microbial respiration (M_R) in three types soil (Chromic Cambisols, Chromic Luvisols and Eutric Leptosols) of mixed beech forest (Beech- Hornbeam and Beech- Maple). Soil was randomly sampled from 0–10 cm layer (plant litter removed), 90 soil samples were taken. C_mic determined by the fumigation-extraction method and M_R by closed bottle method. Soil C_org, N_tot and pH were measured. There are significant differences between the soil types concerning the C_mic content and M_R. These parameters were highest in Chromic Cambisols following Chromic Luvisols, while the lowest were in Eutric Leptosols. A similar trend of C_org and N_tot was observed in studied soils. Two-way ANOVA indicated that soil type and forest type have significantly effect on the most soil characteristics. Chromic Cambisols shows a productive soil due to have the maximum C_mic, M_R, C_org and N_tot. In Cambisols under Beech- Maple forest the C_mic value and soil C/N ratio were higher compared to Beech-Hornbeam (19.5 and 4.1 mg C g^–1, and 16.3 and 3.3, respectively). This fact might be indicated that Maple litter had more easy decomposable organic compounds than Hornbeam. According to regression analysis, 89 and 68 percentage of C_mic variability could explain by soil C_org and N_tot respectively.     

Root-derived respiration and non-structural carbon of rice seedlings

Various methods have been suggested to separate root and microbial contributions to soil respiration. However, to date there is no ideal approach available to partition below-ground CO₂ fluxes in its components although the combination of traditional methods with approaches based on isotopes seems especially promising for the future improvement of estimates. Here we provide evidence for the applicability of a new approach based on the hypothesis that root-derived (rhizomicrobial) respiration, including root respiration and CO₂ derived from microbial activity in the immediate vicinity of the root, is proportional to non-structural carbon contents (sugars and organic acids) of plant tissues. We examined relationships between root-derived CO₂ and non-structural carbon of rice (Oryza sativa) seedlings using ¹⁴C pulse labelling techniques, which partitioned the ¹⁴C fixed by photosynthesis into root-derived ¹⁴CO₂, and ¹⁴C in sugars and organic acids of roots and shoots. After the ¹⁴C pulse ¹⁴C in both sugars and organic acids of plant tissues decreased steeply during the first 12 h, and then decreased at a lower rate during the remaining 60 h. Soil ¹⁴CO₂ efflux and soil CO₂ efflux strongly depended on ¹⁴C pools in non-structural carbon of the plant tissues. Based on the linear regression between root-derived respiration and total non-structural carbon (sugars and organic acids) of roots, non-rhizomicrobial respiration (SOM-derived) was estimated to be 0.25 mg C g⁻¹ root d.w. h⁻¹. Assuming the value was constant, root-derived respiration contributed 85–92% to bulk soil respiration.     

Black carbon decomposition and incorporation into soil microbial biomass estimated by C labeling

Incomplete combustion of organics such as vegetation or fossil fuel led to accumulation of charred products in the upper soil horizon. Such charred products, frequently called pyrogenic carbon or black carbon (BC), may act as an important long-term carbon (C) sink because its microbial decomposition and chemical transformation is probably very slow. Direct estimations of BC decomposition rates are absent because the BC content changes are too small for any relevant experimental period. Estimations based on CO₂ efflux are also unsuitable because the contribution of BC to CO₂ is too small compared to soil organic matter (SOM) and other sources.We produced BC by charring ¹⁴C labeled residues of perennial ryegrass (Lolium perenne). We then incubated this ¹⁴C labeled BC in Ah of a Haplic Luvisol soil originated from loess or in loess for 3.2 years. The decomposition rates of BC were estimated based on ¹⁴CO₂ sampled 44 times during the 3.2 years incubation period (1181 days). Additionally we introduced five repeated treatments with either 1) addition of glucose as an energy source for microorganisms to initiate cometabolic BC decomposition or 2) intensive mixing of the soil to check the effect of mechanical disturbance of aggregates on BC decomposition. Black carbon addition amounting to 20% of C_org of the soil or 200% of C_org of loess did not change total CO₂ efflux from the soil and slightly decreased it from the loess. This shows a very low BC contribution to recent CO₂ fluxes. The decomposition rates of BC calculated based on ¹⁴C in CO₂ were similar in soil and in loess and amounted to 1.36 10⁻⁵ d⁻¹ (=1.36 10⁻³% d⁻¹). This corresponds to a decomposition of about 0.5% BC per year under optimal conditions. Considering about 10 times slower decomposition of BC under natural conditions, the mean residence time (MRT) of BC is about 2000 years, and the half-life is about 1400 years. Considering the short duration of the incubation and the typical decreasing decomposition rates with time, we conclude that the MRT of BC in soils is in the range of millennia.The strong increase in BC decomposition rates (up to 6 times) after adding glucose and the decrease of this stimulation after 2 weeks in the soil (and after 3 months in loess) allowed us to conclude cometabolic BC decomposition. This was supported by higher stimulation of BC decomposition by glucose addition compared to mechanical disturbance as well as higher glucose effects in loess compared to the soil. The effect of mechanical disturbance was over within 2 weeks. The incorporation of BC into microorganisms (fumigation/extraction) after 624 days of incubation amounted to 2.6 and 1.5% of ¹⁴C input into soil and loess, respectively. The amount of BC in dissolved organic carbon (DOC) was below the detection limit (<0.01%) showing no BC decomposition products in water leached from the soil.We conclude that applying ¹⁴C labeled BC opens new ways for very sensitive tracing of BC transformation products in released CO₂, microbial biomass, DOC, and SOM pools with various properties.     

Determination of the soil microbial biomass carbon using the method of substrate-induced respiration

Specific features of determining the carbon content in the soil microbial biomass using the method of substrate-induced respiration (MB_SIR) were studied as related to the conditions of the incubation (the glucose concentration and temperature) and pre-incubation (the duration and temperature) of the soil samples collected in the summer (tundra gley and soddy-podzolic soils and chernozems) and in different seasons (for the gray forest soil). The glucose concentration providing the highest substrate-induced respiration (SIR) in the soils studied was shown to be 2–15 mg/g. The MB_SIR in the soil samples collected in summer and in the soils pre-incubated for 10 and 22°C (7 days) did not significantly differ. The MB_SIR in the gray forest soil pre-incubated at 3, 6, and 10°C (winter, spring/autumn, and summer, respectively) and at 22°C (recommended by the authors of the SIR method) was similar for the cropland in all the seasons. For the meadow, it was the same in the winter, summer, and autumn, and, in summer, it did not differ only for the forest. For the comparative assessment of the MB_SIR, soil samples from different ecosystems are recommended to be collected in the autumn or in the summer. Soil samples of 100–500 g should be pre-incubated for 7 days at 22°C and moisture of 60% of the total water capacity; then, 1-2 g soil should be incubated with glucose (10 mg/g) at 22°C for 3–5 hours.     

Estimating the active and total soil microbial biomass by kinetic respiration analysis

 A model describing the respiration curves of glucose-amended soils was applied to the characterization of microbial biomass. Both lag and exponential growth phases were simulated. Fitted parameters were used for the determination of the growing and sustaining fractions of the microbial biomass as well as its specific growth rate (μ _max). These microbial biomass characteristics were measured periodically in a loamy silt and a sandy loam soil incubated under laboratory conditions. Less than 1% of the biomass oxidizing glucose was able to grow immediately due to the chronic starvation of the microbial populations in situ. Glucose applied at a rate of 0.5 mg C g^–1 increased that portion to 4–10%. Both soils showed similar dynamics with a peak in the growing biomass at day 3 after initial glucose amendment, while the total (sustaining plus growing) biomass was maximum at day 7. The microorganisms in the loamy silt soil showed a larger growth potential, with the growing biomass increasing 16-fold after glucose application compared to a sevenfold increase in the sandy loam soil. The results gained by the applied kinetic approach were compared to those obtained by the substrate-induced respiration (SIR) technique for soil microbial biomass estimation, and with results from a simple exponential model used to describe the growth response. SIR proved to be only suitable for soils that contain a sustaining microbial biomass and no growing microbial biomass. The exponential model was unsuitable for situations where a growing microbial biomass was associated with a sustaining biomass. The kinetic model tested in this study (Panikov and Sizova 1996) proved to describe all situations in a meaningful, quantitative and statistically reliable way. Received: 19 July 1999     

Fumigation-extraction and substrate-induced respiration derived microbial biomass C,and respiration rate in limed soil of Scots pine sapling stands

The effect of liming on microbial biomass C and respiration activity was studied in four liming experiments on young pine plantations. One of the experimental sites had been limed and planted 12 years before, two 5 years before, and one a year before soil sampling. The youngest experimental site was also treated with ash fertilizer. Liming raised the pH_KCl of the humus layer by 1.5 units or less. Microbial biomass was measured using the fumigation-extraction and substrate-induced respiration methods. Liming did not significantly affect microbial biomass C, except in the experiment which had been limed 11 years ago, where there was a slight biomass increase. Basal respiration, which was measured by the evolution of CO₂, increased in the limed soils, except for the youngest experiment, where there was no effect. Ash fertilization raised the soil pH_KCl by about 0.5 unit, but did not influence microbial biomass C or basal respiration. Fumigation-extraction and substrate-induced respiration derived microbial biomass C values were correlated positively with each other (r=0.65), but substrate-induced respiration gave approximately 1.3 times higher results. In addition, the effect of storing the soil samples at +6 and -18°C was evaluated. The effects were variable but, generally, the substrate-induced respiration derived microbial biomass C decreased, and the fumigation-extraction derived microbial biomass C and basal respiration decreased or were not affected by storage.     

Grazing and plant-canopy effects on semiarid soil microbial biomass and respiration

The major objectives of this study were to determine the influence of grazing on the soil microbial biomass and activity in semiarid grassland and shrubland areas and to quantify the canopy effect (the differences in soil microbial biomass and activities between soils under plant canopies and soils in the open between plants). We also quantified changes in microbial biomass and activity during seasonal transition from dry to moist conditions. Chronosequences of sites withdrawn from grazing for 0, 11, and 16 years were sampled in a grassland (Bouteloua spp.) area and a shrubland (Atriplex canescens) area on and near the Sevilleta National Wildlife Reguge in central New Mexico, USA. Samples were obtained from beneath the canopies of plants (Yucca glauca in the grassland and A. canescens in the shrubland) and from open soils; they were collected three times during the spring and summer of a single growing season. Organic C, soil microbial biomass C, and basal respiration rates (collectively called the soil C triangle) were measured. We also calculated the microbial: organic C ratio and the metabolic quotient (ratio of respiration to microbial C) as measures of soil organic C stability and turnover. Although we had hypothesized that individual values of the soil C triangle would increase and that the ratios would decrease with time since grazing, differences in microbial parameters between sites located along the chronosequences were generally not significant. Grazing did not have a consistion effect on organic C, microbial C, and basal respiration in our chronosequences. The microbial: organic C ratio and the metabolic quotient generally increased with time since grazing on the shrubland chronosequence. The microbial: organic C ratio decreased with time since grazing and the metabolic quotient increased with time since grazing on the grassland chronosequence. The canopy effect was observed at all sites in nearly all parameters including organic C, microbial C, basal respiration, the microbial: organic C ratio, and the metabolic quotient which were predominantly higher in soils under the canopies of plants than in the open at all sites. Microbial biomass and activity did not increase during the experiment, even though the availability of moisture increased dramatically. The canopy effects were approximately equal on the shrubland and grassland sites. The microbial: organic C ratios and the metabolic quotients were generally higher in the shrubland soils than in the grassland soils.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.     

Relationship between soil microbial biomass determined by SIR and PLFA analysis in floodplain soils

Purpose  

Although the challenge of linking pedology and hydrology has been identified recently, the microbial diversity in floodplain soils has been studied little in comparison to terrestrial soils. In terrestrial soils, the relationship between soil microbial biomass (SMB) determined by substrate-induced respiration (SIR) and phospholipid fatty acids (PLFA) was examined in several studies. Floodplain soils reveal substantially different properties; they are exposed to drastic changes in water regime from flooded to dry conditions. The relation between SMB determined by SIR and PLFA has, up to the present, not been adequately proved in floodplain soils. Thus, this study was conducted to elucidate the relationship between SMB determined with both methods in a set of floodplain soils of eleven study sites from three study areas along the Elbe River (Germany).     

不同农田生态系统土壤微生物生物量碳的变化研究

试验研究不同农田生态系统土壤微生物生物量碳的变化结果表明,长期单施N、P肥处理对土壤有机碳和微生物生物量碳的影响不明显,施有机肥处理土壤微生物生物量碳及微生物生物量碳/有机碳值均高于其他施肥处理,轮作中引入豆科作物或豆科连作均对土壤微生物生物量碳的积累有显著作用。     

Soil respiration is not limited by reductions in microbial biomass during long-term soil incubations

Declining rates of soil respiration are reliably observed during long-term laboratory incubations. However, the cause of this decline is uncertain. We explored different controls on soil respiration to elucidate the drivers of respiration rate declines during long-term soil incubations. Following a long-term (707 day) incubation (30 °C) of soils from two sites (a cultivated and a forested plot at Kellogg Biological Station, Hickory Corners, MI, USA), soils were significantly depleted of both soil carbon and microbial biomass. To test the ability of these carbon- and biomass-depleted (“incubation-depleted”) soils to respire labile organic matter, we exposed soils to a second, 42 day incubation (30 °C) with and without an addition of plant residues. We controlled for soil carbon and microbial biomass depletion by incubating field fresh (“fresh”) soils with and without an amendment of wheat and corn residues. Although respiration was consistently higher in the fresh versus incubation-depleted soil (2 and 1.2 times higher in the fresh cultivated and fresh forested soil, respectively), the ability to respire substrate did not differ between the fresh and incubation-depleted soils. Further, at the completion of the 42 day incubation, levels of microbial biomass in the incubation-depleted soils remained unchanged, while levels of microbial biomass in the field-fresh soil declined to levels similar to that of the incubation-depleted soils. Extra-cellular enzyme pools in the incubation-depleted soils were sometimes slightly reduced and did not respond to addition of labile substrate and did not limit soil respiration. Our results support the idea that available soil organic matter, rather than a lack microbial biomass and extracellular enzymes, limits soil respiration over the course of long-term incubations. That decomposition of both wheat and corn straw residues did not change after major changes in the soil biomass during extended incubation supports the omission of biomass values from biogeochemical models.     

土壤微生物生物量和呼吸强度对大气CO2浓度升高的响应

随着全球环境变化对陆地生态系统的影响逐渐成为公众和科学界关注的热点,CO2作为一种重要的温室气体受到格外重视.大气CO2浓度升高将直接影响陆地植物的光合作用[1].植物的光合产物约有20% ～ 50%被运送到地下,通过根系分泌及死亡输入土壤[2],因此大气CO2浓度升高将会间接影响土壤生态系统.长期以来,关于大气CO2浓度升高对农作物地上部分的研究较多,但关于大气CO2浓度升高对土壤特别是土壤微生物的影响的研究报道较少.     

Effect of paclobutrazol on microbial biomass,respiration and cellulose decomposition in soil

Paclobutrazol is a plant growth regulator largely utilized in mango cultivation and usually applied directly to soil. The aim of this study was to examine the effect of paclobutrazol on soil microbial biomass, soil respiration and cellulose decomposition in Brazilian soils under laboratory conditions. Soil samples were collected from fields with and without a reported history of paclobutrazol application. A solution of paclobutrazol (8 mg of active ingredient kg^?1 of soil) was added to soils, which were then incubated at 28 °C for 30 days. Paclobutrazol decreased soil microbial biomass, soil respiration and cellulose decomposition in soil with and without a report of paclobutrazol application, while significant increase was observed in the respiratory quotient (qCO₂). Our results show that the soil microbiological attributes were negatively affected by paclobutrazol in short-term experiment.     

Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA

We studied the distribution of the indigenous bacterial and fungal communities in a forest soil profile. The composition of bacterial and fungal communities was assessed by denaturing gradient gel electrophoresis (DGGE) of total and extracellular DNA extracted from all the soil horizons. Microbial biomass C and basal respiration were also measured to assess changes in both microbial biomass and activity throughout the soil profile. The 16S rDNA-DGGE revealed composite banding patterns reflecting the high bacterial diversity as expected for a forest soil, whereas 18S rDNA-DGGE analysis showed a certain stability and a lower diversity in the fungal communities. The banding patterns of the different horizons reflected changes in the microbial community structure with increasing depth. In particular, the DGGE analysis evidenced complex banding patterns for the upper A1 and A2 horizons, and a less diverse microflora in the deeper horizons. The low diversity and the presence of specific microbial communities in the B horizons, and in particular in the deeper ones, can be attributed to the selective environment represented by this portion of the soil profile. The eubacterial profiles obtained from the extracellular DNA revealed the presence of some bands not present in the total DNA patterns. This could be interpreted as the remainders of bacteria not any more present in the soil because of changes of edaphic conditions and consequent shifting in the microbial composition. These characteristic bands, present in all the horizons with the exception of the A1, should support the concept that the extracellular DNA is able to persist within the soil. Furthermore, the comparison between the total and extracellular 16S rDNA-DGGE profiles suggested a downwards movement of the extracellular DNA.     

Significance of microbial biomass for carbon and nitrogen mineralization in soil

C and N mineralization was quantified in an incubation experiment with two samples containing different amounts of microbial biomass. The samples from two layers (0–20, 20–30 cm) of an arable luvisol from loess were fertilized with nitrate, mixed with ¹⁴C-labelled straw and incubated for 52 days at different O₂ levels. Decreasing O₂ concentrations (21, 2, 1 and 0% O₂) in soil conducted a decrease in C and N mineralization. More C and N were mineralized in samples with a higher initial microbial biomass. The differences in microbial biomass were still present at the end of the experiment, but more proliferation was detected in samples with the lower initial microbial biomass, leading to equal ratios between microbial biomass-C and soil organic C in both soils.     

添加黏土及植物残体混合物对沙质土壤中呼吸作用和微生物量碳、氮有效性的影响

Crop yields in sandy soils can be increased by addition of clay-rich soil, but little is known about the effect of clay addition on nutrient availability after addition of plant residues with different C/N ratios. A loamy sandy soil(7% clay) was amended with a clay-rich subsoil(73% clay) at low to high rates to achieve soil mixtures of 12%, 22%, and 30% clay, as compared to a control(sandy soil alone) with no clay addition. The sandy-clay soil mixtures were amended with finely ground plant residues at 10 g kg~(-1): mature wheat(Triticum aestivum L.) straw with a C/N ratio of 68, mature faba bean(Vicia faba L.) straw with a C/N ratio of 39, or their mixtures with different proportions(0%–100%, weight percentage) of each straw. Soil respiration was measured over days 0–45 and microbial biomass C(MBC), available N, and p H on days 0, 15, 30, and 45. Cumulative respiration was not clearly related to the C/N ratio of the residues or their mixtures, but C use efficiency(cumulative respiration per unit of MBC on day 15) was greater with faba bean than with wheat and the differences among the residue mixtures were smaller at the highest clay addition rate. The MBC concentration was lowest in sole wheat and higher in residue mixtures with 50% of wheat and faba bean in the mixture or more faba bean. Soil N availability and soil p H were lower for the soil mixtures of 22% and 30% clay compared to the sandy soil alone. It could be concluded that soil cumulative respiration and MBC concentration were mainly influenced by residue addition, whereas available N and p H were influenced by clay addition to the sandy soil studied.     

Near-infrared characteristics of forest humus are correlated with soil respiration and microbial biomass in burnt soil

Near-infrared spectroscopy and soil physicochemical determinations (pH_H2O, organic matter content, total C content, NH _inf4 ^sup+ , total N content, cation-exchange capacity, and base saturation) were used to characterize fire-or wood ash-treated humus samples. The spectroscopic and the soil physicochemical analysis data from the humus samples were used separately to explain observed variations in soil respiration and microbial biomass C by partial least-square regression. The first regression component obtained from the physicochemical and spectroscopic characterization explained 10–12% and 60–80% of the biological variation, respectively. This suggests that information on organic material collected from near-infrared spectra is very useful for explaining biological variations in forest humus.     

Relationships of soil respiration to microbial biomass, substrate availability and clay content

The roles of microbial biomass (MBC) and substrate supply as well as their interaction with clay content in determining soil respiration rate were studied using a range of soils with contrasting properties. Total organic C (TOC), water-soluble organic carbon, 0.5 M K₂SO₄-extractable organic C and 33.3 mM KMnO₄-oxidisable organic carbon were determined as C availability indices. For air-dried soils, these indices showed close relationship with flush of CO₂ production following rewetting of the soils. In comparison, MBC determined with the chloroform fumigation-extraction technique had relatively weaker correlation with soil respiration rate. After 7 d pre-incubation, soil respiration was still closely correlated with the C availability indices in the pre-incubated soils, but poorly correlated with MBC determined with three different techniques—chloroform fumigation extraction, substrate-induced respiration, and chloroform fumigation-incubation methods. Results of multiple regression analyses, together with the above observations, suggested that soil respiration under favourable temperature and moisture conditions was principally determined by substrate supply rather than by the pool size of MBC. The specific respiratory activity of microorganisms (CO₂-C/MBC) following rewetting of air-dried soils or after 7 d pre-incubation was positively correlated with substrate availability, but negatively correlated with microbial pool size. Clay content had no significant effect on CO₂ production rate, relative C mineralization rate (CO₂-C/TOC) and specific respiratory activity of MBC during the first week incubation of rewetted dry soils. However, significant protective effect of clay on C mineralization was shown for the pre-incubated soils. These results suggested that the protective effect of clay on soil organic matter decomposition became significant as the substrate supply and microbial demand approached to an equilibrium state. Thereafter, soil respiration would be dependent on the replenishment of the labile substrate from the bulk organic C pool.     

C and N natural abundance of the soil microbial biomass

Stable isotope analysis is a powerful tool in the study of soil organic matter formation. It is often observed that more decomposed soil organic matter is ¹³C, and especially ¹⁵N-enriched relative to fresh litter and recent organic matter. We investigated whether this shift in isotope composition relates to the isotope composition of the microbial biomass, an important source for soil organic matter. We developed a new approach to determine the natural abundance C and N isotope composition of the microbial biomass across a broad range of soil types, vegetation, and climates. We found consistently that the soil microbial biomass was ¹⁵N-enriched relative to the total (3.2 ‰) and extractable N pools (3.7 ‰), and ¹³C-enriched relative to the extractable C pool (2.5 ‰). The microbial biomass was also ¹³C-enriched relative to total C for soils that exhibited a C3-plant signature (1.6 ‰), but ¹³C-depleted for soils with a C4 signature (−1.1 ‰). The latter was probably associated with an increase of annual C3 forbs in C4 grasslands after an extreme drought. These findings are in agreement with the proposed contribution of microbial products to the stabilized soil organic matter and may help explain the shift in isotope composition during soil organic matter formation.