Long-term and legacy effects of manure application on soil microbial community composition

We analyzed soil prokaryotic and fungal community composition in soils with varying histories of cattle manure application. The manure treatments were (i) annual application for 43 years (MF), (ii) annual application for 14 years followed by 29 years without application (MF14), and (iii) annual application for 30 years followed by 13 years without application (MF30). An annual application of chemical nitrogen (N) fertilizer (CNF) and a non-amended control (Con) were also included. Soil prokaryotic evenness and diversity significantly decreased in MF relative to other treatments in fall, but were similar to the other fertilizer treatments in spring and summer. Distinct prokaryotic and fungal community composition was observed in MF compared to other treatments across fall, spring, and summer seasons. The MF treatment significantly increased the relative abundance of Firmicutes, Gammaproteobacteria, and Gemmatimonadetes, but significantly decreased the relative abundance of Acidobacteria. In fall, the soil prokaryotic and fungal community composition with MF30 was significantly different than the other fertilization treatments. Overall, the study showed that annual manure application (MF) led to a different microbial community composition than the other fertilizer treatments. Soil without manure application for 13 years (MF30) had a significantly different microbial community composition from other fertilizer treatments in fall, while the soil without manure application for 29 years (MF14) resembled a microbial community that had never received manure.     

Ramifications of crop residue loading for soil microbial community composition,activity and nutrient supply

Variable results have been reported on the effects of crop residue loads on soil microbial properties. We investigated changes in soil bacterial composition, β-glucosidase enzyme activity and nutrient bioavailability in response to wheat residue loading. The treatments included three levels of above-ground wheat residues (removed, retained or supplemented), with or without fertilizer N. Bacteroidetes, Firmicutes and Verrucomicrobia (the first two are copiotrophs) were less abundant where residues were removed than where residues were retained or supplemented, but the reverse was true for Actinobacteria, Cyanobacteria, Chloroflexi and Nitrospirae (all oligotrophs, although some Actinobacteria can be copiotrophic). Actinobacteria were also less abundant where fertilizer N was applied, and the abundances of their genera (including Arthrobacter and Mycobacterium) increased where residues were removed, confirming that they were oligotrophic in this study. β-diversity showed similar differences in the bacterial community structures because of residue management, but α-diversity was not affected by residue management or N fertilizer. β-glucosidase enzyme activities increased as C inputs increased with residue manipulation and N fertilizer. The enzyme activities increased with increasing residue loading in the 0–15 cm soil depth, but decreased with soil depth. Soil K supply increased with increasing residue loading, but nitrate-N supply was highest with residue retention. These results demonstrate remarkable resilience of soil microbial functioning under a wide range of crop residue inputs, without adverse effects on enzyme activity attributable to inorganic N fertilizer. The increasing β-glucosidase activity with increasing residue loading probably explains why crop residue return does not always increase soil C stocks.     

Functional resilience of soil microbial communities depends on both soil structure and microbial community composition

The effects of soil structure and microbial community composition on microbial resistance and resilience to stress were found to be interrelated in a series of experiments. The initial ability of Pseudomonas fluorescens to decompose added plant residues immediately after a copper or heat stress (resistance) depended significantly on which of 26 sterile soils it was inoculated into. Subsequent studies showed that both the resistance and subsequent recovery in the ability of P. fluorescens to decompose added plant residues over 28 days after stress (resilience) varied significantly between a sandy and a clay-loam soil. Sterile, sandy and clay-loam soil was then inoculated with a complex microbial community extracted from either of the soils. The resulting microbial community structure depended on soil type rather than the source of inoculum, whilst the resistance and resilience of decomposition was similarly governed by the soil and not the inoculum source. Resilience of the clay-loam soil to heat stress did not depend on the water content of the soil at the time of stress, although the physical condition of the soil when decomposition was measured did affect the outcome. We propose that soil functional resilience is governed by the physico-chemical structure of the soil through its effect on microbial community composition and microbial physiology.     

Drying and rewetting of forest floors: dynamics of soluble phosphorus,microbial biomass-phosphorus,and the composition of microbial communities

Drying and rewetting (D/W) of soils often leads to a pulse of total dissolved phosphorus (TDP) by lysis of sensitive microorganisms. The relevance of D/W on the P cycle in ecosystems depends on the duration of the TDP release. In forest soils, the forest floor represents a hotspot of microbial activity and is often prone to D/W. Here, we investigated the dynamics of TDP, the microbial P pool (Pmic), and the composition of microbial communities after D/W. Samples were taken from Oi and Oe layers of a European beech and a Norway spruce site and desiccated up to ??100 MPa (pF 6) at 20 °C, while controls were kept moist. TDP and Pmic were measured 0, 1, 3, 7, and 14 days after rewetting and the composition of microbial communities was analyzed by automated ribosomal intergenic spacer analysis after 14 days. After D/W, the largest TDP net release (D/W-control) was from Oe layers with 40–50 mg P kg^?1 and inorganic P as the dominant fraction. The TDP concentrations decreased strongly in Oi layers within 1 (beech) to 4 (spruce) days, while remaining stable in Oe layers. The TDP dynamics were linked to the decrease and recovery of Pmic after D/W. Pmic dynamics differed between layers and stand types, suggesting the influence of microbial communities with different D/W sensitivities. The composition of microbial communities varied strongly among sites and layers, while D/W only affected the composition of bacterial and fungal communities in the spruce Oe layer. D/W of forest floors increases the plant available P and affects the P cycle in forest ecosystems.     

Immediate and subsequent effects of drying and rewetting on microbial biomass in a paddy soil

Many surface soils in Japan may experience more frequent and intense drying–rewetting (DRW) events due to future climate changes. Such DRW events negatively and positively affect microbial biomass carbon (MBC) through microbial stress and substrate supply mechanisms, respectively. To assess the MBC immediately after DRW and during the incubation with repeated DRW cycles, two laboratory experiments were conducted for a paddy soil. In the first experiment, we exposed the soil to different drying treatments and examined the MBC and hourly respiration rates immediately after the rewetting to evaluate the microbial stress. In the second experiment, we compared microbial growth rates during the incubation of the partially sterilized soil with a continuously moist condition and repeated DRW cycles to evaluate the contribution of the substrate supply from non-biomass soil organic C on MBC. First, all drying treatments caused a reduction in MBC immediately after the rewetting, and higher drying intensities induced higher reduction rates in MBC. A reduction of more than 20% in MBC induced the C-saturated conditions for surviving microbes because sufficient concentrations of labile substrate C were released from the dead MBC. Second, repeated DRW cycles caused increases in the microbial growth rates because substrate C was supplied from non-biomass organic C. In conclusion, MBC decreased immediately after DRW due to microbial stress, whereas MBC increased during repeated DRW cycles due to substrate C supplied from non-biomass organic C.     

Exotic earthworms alter soil microbial community composition and function

Exotic earthworms can profoundly alter soil carbon (C) and nitrogen (N) dynamics in northern temperate forests, but the mechanisms explaining these responses are not well understood. We compared the soil microbial community (SMC) composition (measured as PLFAs) and enzyme activity between paired earthworm-invaded and earthworm-free plots in northern hardwood forests of New York, USA. We hypothesized that differences in SMCs and enzyme activity between plots would correspond with differences in soil C content and C:N ratios. Relative abundance of several bacterial (mostly gram-positive) PLFAs was higher and that of two fungal PLFAs was lower in earthworm compared to reference plots, largely because of earthworm incorporation of the organic horizon into mineral soil. In surface mineral soil earthworms increased arbuscular mycorrhizal fungi (AMF) and gram-positive bacterial PLFAs, and decreased fungal (mostly saprotrophic) and several bacterial (gram-negative and non-specific) PLFAs. Earthworms also increased the activities of cellulolytic relative to lignolytic enzymes in surface mineral soil, and the relationships between enzyme activities and components of the SMC suggest a substrate-mediated effect on the SMC and its metabolism of C. A highly significant relationship between components of the SMC and soil C:N also suggests that earthworms reduce soil C:N through functional and compositional shifts in the SMC. Finally, changes in AMF abundances were linked to phosphatase activity, suggesting that earthworms do not necessarily inhibit P-acquisition by AMF-associated plants in our study system. We conclude that the combined influence of earthworm-related changes in physical structure, accessibility and chemistry of organic matter, and relative abundance of certain groups of fungi and bacteria promote C metabolism, in particular by increasing the activities of cellulolytic vs. lignolytic enzymes.     

Grazing effects on microbial community composition, growth and nutrient cycling in salt marsh and sand dune grasslands

The effect of grazing by large herbivores on the microbial community and the ecosystem functions they provide are relatively unknown in grassland systems. In this study, the impact of grazing upon the size, composition and activity of the soil microbial community was measured in field experiments in two coastal ecosystems: one salt marsh and one sand dune grassland. Bacterial, fungal and total microbial biomass were not systematically affected by grazing across ecosystems, although, within an ecosystem, differences could be detected. Fungal-to-bacterial ratio did not differ with grazing for either habitat. Redundancy analysis showed that soil moisture, bulk density and root biomass significantly explained the composition of phospholipid fatty acid (PLFA) markers, dominated by the distinction between the two grassland habitats, but where the grazing effect could also be resolved. PLFA markers for Gram-positive bacteria were more proportionally abundant in un-grazed, and markers for Gram-negative bacteria in grazed grasslands. Bacterial growth rate (leucine incorporation) was highest in un-grazed salt marsh but did not vary with grazing intensity in the sand dune grassland. We conclude that grazing consistently affects the composition of the soil microbial community in semi-natural grasslands but that its influence is small (7 % of the total variation in PLFA composition), compared with differences between grassland types (89 %). The relatively small effect of grazing translated to small effects on measurements of soil microbial functions, including N and C mineralisation. This study is an early step toward assessing consequences of land-use change for global nutrient cycles driven by the microbial community.     

长期不同养分缺乏对冬油菜土壤微生物群落组成及多样性的影响

为探明长期不同养分缺乏对冬油菜根际与非根际土壤细菌和真菌群落组成结构及多样性的影响,以江汉平原中稻 -冬油菜田间定位试验为研究对象,选取施磷钾肥不施氮肥(-N)、施氮钾肥不施磷肥(-P)、施氮磷肥不施钾肥(-K)和施用氮磷钾肥(NPK)4个处理,于成熟期采集各处理冬油菜非根际土壤(标记为 0)和根际土壤(标记为 1)。基于 Illumina MiSeq高通量测序技术对土壤样本的细菌 16S rDNA和真菌 ITS进行扩增、测序,并结合生物信息学分析根际和非根际土壤中细菌和真菌群落组成和多样性。结果表明:长期养分的投入缺乏造成土壤 pH和养分含量均有不同程度的降低。相比非根际土壤,冬油菜根际土壤的有机质、有效磷和速效钾含量有富集的趋势,而缓效钾差异不显著。长期平衡施肥(NPK处理)条件下,油菜根际土壤的细菌多样性比非根际土壤高,而根际真菌多样性低于非根际土壤。门分类水平上,各处理土壤中的细菌优势物种是绿弯菌门、酸杆菌门和变形菌门,平均相对丰度分别为 30.9%、25.7%和 17.6%;真菌优势物种是子囊菌门和担子菌门,平均相对丰度分别为 52.0%和 6.3%。相比 NPK处理,-N、-P和 -K处理对冬油菜根际和非根际细菌、根际真菌群落分布有显著影响,但对非根际真菌群落分布无明显作用,从而导致各处理的优势属种类型和相对丰度差异显著。冗余分析结果表明,pH、速效钾和有效磷含量对土壤细菌群落结构的影响最为显著,而有机质和碱解氮含量对真菌群落结构的影响最为明显。可见,长期不同养分缺乏会显著改变冬油菜根际细菌和真菌群落的组成结构及其多样性,尤其是缺磷、缺氮,其次是缺钾。因此,平衡施肥仍是维持农田微生物生态系统平衡与稳定的重要措施。     

Non-target effects of entomopathogenic nematodes on soil microbial community and nutrient cycling processes: A microcosm study

Under microcosm conditions, changes in the soil microbial biomass, respiration rates, and nitrogen pools as indicators of potential non-target effects of entomopathogenic nematodes on soil, were evaluated. Two tests were conducted using soil collected from the field with no history of entomopathogenic nematode application. Treatments consisted of applications of Steinernema carpocapsae All strain in the presence or absence of the wax moth Galleria mellonella larva as a target insect host, compared with the untreated control (soil only). In the second experiment an insecticide treatment (trichlorfon) was added. Microbial biomass (total nitrogen), and mineral nitrogen (NH₄-N, NO₃-N) were measured using standard methods up to 32 days and soil respiration up to 64 days in both experiments. No negative effect was detected in the soil microbial biomass, respiration and nitrogen pools after application of S. carpocapsae. However, a significant increase in ammonium was measured during almost the entire period of the test in the nematode plus larva treatment, not shown in the other treatments. This high level of ammonium in the nematode plus larva treatment showed that entomopathogenic nematodes can indirectly affect system-level processes in soil and adds evidence on the importance of indirect interactions affecting functions in soil food webs. The application of the insecticide trichlorfon significantly suppressed the microbial biomass and nitrification process.     

Drying and rewetting effects on C and N mineralization and microbial activity in surface and subsurface California grassland soils

Rewetting a dry soil has long been known to cause a burst of respiration (the “Birch Effect”). Hypothesized mechanisms for this involve: (1) release of cellular materials as a result of the rapid increase in water potential stress and (2) stimulating C-supply to microbes via physical processes. The balance of these factors is still not well understood, particularly in the contexts of multiple dry/wet cycles and of how resource and stress patterns vary through the soil profile. We evaluated the effects of multiple dry/wet cycles on surface and subsurface soils from a California annual grassland. Treatments included 4, 6, and 12 cycles that varied the length of the drying period between rewetting events. Respiration was monitored after each wetting event while extractable C and N, microbial biomass, and microbial activity were assayed initially, after the first rewetting event, and at the end of the experiment. Initially, microbial biomass and activity (respiration, dehydrogenase, and N mineralization) in subsurface soils were ca. 10% and 20% of surface soil levels. After multiple cycles, however, subsurface soil microbial biomass and activity were enhanced by up to 8-fold, even in comparison to the constantly moist treatment. By comparison, surface soil microbial biomass and activity were either moderately (i.e. 1.5 times increase) or not affected by wetting and drying. Drying and rewetting led to a cascade of responses (soluble C release, biomass growth, and enhanced activity) that mobilized and metabolized otherwise unavailable soil carbon, particularly in subsurface soils.     

多糖微生物菌液对油菜吸收养分和土壤氮磷淋失的影响

为探究富含多糖微生物菌液和化肥混合使用对植物吸收养分和控制土壤氮磷淋失的影响,采用油菜盆栽试验方法,把一定体积微生物菌液和不同量化肥进行混合灌溉油菜,油菜收获后,测定油菜和上下两层土壤的理化性质。结果表明,T5 处理(50 mL 微生物菌液,1.2 g 尿素和0.72 g 磷酸二氢钠混合加入到4.5 kg 土壤中)油菜生物量最大,油菜对氮、磷、钾具有较高同化吸收能力;随着化肥用量的增加,上层土壤有效磷含量增加缓慢,下层土壤有效磷含量与对照没有显著性差异,磷的垂直淋失风险较小;当化肥用量低于T5 处理用量时,上层土壤铵态氮含量高于对照,而土壤硝态氮含量低于对照,下层土壤铵态氮和硝态氮含量与对照没有显著性差异,说明氮淋失量较小;化肥用量高于T5 处理用量时,与对照相比,上层土壤硝态氮和铵态氮含量显著增加,下层硝态氮增加不显著,但是土壤铵态氮显著增加,提高了氮垂直淋失风险。加入微生物菌液可以活化土壤中的钾元素,有利于油菜对钾的吸收。研究表明,微生物菌液与适量化肥混合使用,有助于化肥减量和油菜不减产,不但对土壤氮、磷淋失具有一定抑制作用,还可促进油菜对土壤中钾的吸收。     

Variations in microbial community composition through two soil depth profiles

Soil profiles are often many meters deep, but with the majority of studies in soil microbiology focusing exclusively on the soil surface, we know very little about the nature of the microbial communities inhabiting the deeper soil horizons. We used phospholipid fatty acid (PLFA) analysis to examine the vertical distribution of specific microbial groups and to identify the patterns of microbial abundance and community-level diversity within the soil profile. Samples were collected from the soil surface down to 2 m in depth from two unsaturated Mollisol profiles located near Santa Barbara, CA, USA. While the densities of microorganisms were generally one to two orders of magnitude lower in the deeper horizons of both profiles than at the soil surface, approximately 35% of the total quantity of microbial biomass found in the top 2 m of soil is found below a depth of 25 cm. Principal components analysis of the PLFA signatures indicates that the composition of the soil microbial communities changes significantly with soil depth. The differentiation of microbial communities within the two profiles coincides with an overall decline in microbial diversity. The number of individual PLFAs detected in soil samples decreased by about a third from the soil surface down to 2 m. The ratios of cyclopropyl/monoenoic precursors and total saturated/total monounsaturated fatty acids increased with soil depth, suggesting that the microbes inhabiting the deeper soil horizons are more carbon limited than surface-dwelling microbes. Using PLFAs as biomarkers, we show that Gram-positive bacteria and actinomycetes tended to increase in proportional abundance with increasing soil depth, while the abundances of Gram-negative bacteria, fungi, and protozoa were highest at the soil surface and substantially lower in the subsurface. The vertical distribution of these specific microbial groups can largely be attributed to the decline in carbon availability with soil depth.     

Effects of soil frost on growth, composition and respiration of the soil microbial decomposer community

Most climate change scenarios predict that the variability of weather conditions will increase in coming decades. Hence, the frequency and intensity of freeze-thaw cycles in high-latitude regions are likely to increase, with concomitant effect on soil carbon biogeochemistry and associated microbial processes. To address this issue we sampled riparian soil from a Swedish boreal forest and applied treatments with variations in four factors related to soil freezing (temperature, treatment duration, soil water content and frequency of freeze-thaw cycles), at three levels in a laboratory experiment, using a Central Composite Face-centred (CCF) experimental design. We then measured bacterial (leucine incorporation) and fungal (acetate in ergosterol incorporation) growth, basal respiration, soil microbial phospholipid fatty acid (PLFA) composition, and concentration of dissolved organic carbon (DOC). Fungal growth was higher in soil exposed to freeze-thawing perturbations and freezing temperatures of −6 °C and −12 °C, than under more constant conditions (steady 0 °C). The opposite pattern was found for bacteria, resulting in an increasing fungal-to-bacterial growth ratio following more intensive winter conditions. Soil respiration increased with water content, decreased with treatment duration and appeared to mainly be driven by treatment-induced changes in the DOC concentration. There was a clear shift in the PLFA composition at 0 °C, compared with the two lower temperatures, with PLFA markers associated with fungi as well as a number of unsaturated PLFAs being relatively more common at 0 °C. Shifts in the PLFA pattern were consistent with those expected for phenotypic plasticity of the cell membrane to low temperatures. There were small declines in PLFA concentrations after freeze-thawing and with longer durations. However, the number of freeze-thaw events had no effect on the microbiological variables. The findings suggest that the higher frequency of freeze-thaw events predicted to follow the global warming will likely have a limited impact on soil microorganisms.     

Combined effect of biochar and soil moisture on soil chemical properties and microbial community composition in microplastic-contaminated agricultural soil

Accumulation of microplastics (MPs) in agricultural environments has caused growing concern in recent years because of its detrimental impacts on soil quality, crop productivity and ecosystem function. This study was conducted to assess the impact of biochar on soil chemical and microbial properties in a MP-contaminated soil under two moisture regimes. Soil was contaminated with 1% (w/w) of low-density polyethylene MPs. Four types of standard biochar, that is, oil seed rape (OSR) biochar produced at 550°C (OSR 550) and 700°C (OSR 700) and soft wood pellet (SWP) biochar produced at 550°C (SWP 550) and 700°C (SWP 700), were applied at a rate of 5% (w/w). The control was maintained without MP addition. The samples were incubated in soil with two moisture regimes, that is, at 30% and 70% of the water holding capacity, and the soil chemical and microbiological properties were assessed after 100 days of incubation. OSR biochar application significantly increased soil pH (8.53–8.81) and electrical conductivity (0.51–0.58 dS/m) in both moisture regimes. The effect of biochar application on soil enzyme activity and microbial community composition did not show a clear trend. However, SWP 700 biochar improved soil enzyme activity compared with that of the control and improved bacterial diversity and evenness compared with those of other biochars, which was attributed to the high surface area available for microbial colonization. Low soil moisture content significantly reduced enzyme activity and bacterial richness even with biochar amendment, except for SWP 550 biochar. This study implies the suitability of biochar for improvement of soil quality in MP contaminated soil under both moisture regimes. However, further long-term studies are needed to get a clear understanding on the impact of different types of biochar on MP-contaminated soil.     

Assessing biogas digestate,pot ale,wood ash and rockdust as soil amendments: effects on soil chemistry and microbial community composition

Applying by-products as soil amendments to agricultural systems is growing in popularity. We aimed to assess the efficacy of some contemporary by-products to provide nutrients to crops as well as the potential harm of adding toxic elements to the environment. Four different by-products widely available in Northern Europe were tested for their effects on two nutrient-poor agricultural soils in terms of increasing available macro- and micro-nutrients as well as toxic elements. Assessing soil microbial community as a sensitive tool for evaluating soil quality was conducted with the focus on microbial activity, carbon metabolism and on Rhizobium/Agrobacterium. Wood ash increased pH and Ca_EDTA, K_EDTA and Mg_EDTA in the soils. The only increase in EDTA-extractable micronutrients in the soils was observed by applying pot ale, increasing Cu. None of the amendments increased the availability of Pb and Cd in the soils. Soils amended with the by-products thus remained similar to the unamended control but were quite different from fully mineral fertilised soils. There were no detectable adverse effects on the physiological and genetic profiles of microbial communities. The by-products were moderately beneficial and did not change the soil microbial community as much as the fully fertilised treatment with mineral fertilisers. Changes in the microbial community profiles were probably due to direct effects on microbes limited by K, Ca and N as opposed to indirect effects on plant growth. This is potentially significant in understanding how to improve impoverished and marginal soils as microbial activity affects many other ecosystem functions.     

模拟增温和降水调控对土壤微生物碳氮、群落基质利用模式及群落组成的短期影响

Soil microorganisms are major drivers of soil carbon(C) cycling;however,the response of these microorganisms to climate change remains unclear.In the present study,we investigated how 18 months of multifactor climate treatments(warmed air temperature by 3℃ and decreased or increased precipitation manipulation by 30%) affected soil microbial biomass C and nitrogen(N),community substrate utilization patterns,and community composition.Decreased and increased precipitation significantly reduced microbial biomass C by 13.5% and 24.9% and microbial biomass N by 22.9% and 17.6% in unwarmed plots,respectively(P0.01).Warming enhanced community substrate utilization by 89.8%,20.4%,and 141.4% in the natural,decreased,and increased precipitation plots,respectively.Particularly,warming significantly enhanced the utilization of amine and carboxylic acid substrates among all precipitation manipulation plots.Compared with the natural air temperature with natural precipitation treatment,other treatments affected fungal community richness by -0.9% to 33.6% and reduced the relative abundance of the dominant bacterial and fungal groups by 0.5% to 6.8% and 4.3% to 10.7%,respectively.The warming and/or precipitation manipulation treatments significantly altered Zygomycota abundance(P0.05).Our results indicate that climate change drivers and their interactions may cause changes in soil microbial biomass C and N,community substrate utilization patterns,and community composition,particularly for the fungal community,and shifts in the microorganism community may further shape the ecosystems function.     

Short-term effects of soil amendment with meadowfoam seed meal on soil microbial composition and function

Meadowfoam (Limnanthes alba Hartw. ex Benth) seed meal (MSM), a by-product of meadowfoam oil extraction, has a secondary metabolite known as glucosinolate glucolimnanthin. MSM applied as a soil amendment has been reported to have herbicidal and fertilizer properties. Experiments were conducted over 28 days to evaluate short-term effects of a MSM application on soil microbial communities. MSM was applied to soil as either a full or a split application. In addition to MSM and untreated control treatments, urea was used as a N source to account for the fertilizer effect of the seed meal. Urea was applied either as a full or a split rate on the same schedule as MSM. Soil microbial activities were not different between the full and the split rate applications of MSM. After day 7 following MSM application, carbon-source utilization of microbial communities of MSM was different from the urea and control treatments. Microbial communities in MSM treatments utilized complex carbon sources to a relatively greater degree than microbial communities in urea or control treatments. The C and N inputs from MSM increased the gross metabolic activity of the mixed microbial population. Basal respiration was stimulated and microbes reallocated carbon input to biomass and enzyme production. Within 7 and 14 days after MSM application, the reallocation occurred quickly and microbial biomass increased by at least 80% for C and 95% for N compared to the untreated control. In the short-term, MSM treatments affected nutrient dynamics, and the soil microbial structure and function. The effects of MSM application on the composition of bacterial and fungal communities warrant additional study.     

Changes in enzyme activities and soil microbial community composition along carbon and nutrient gradients at the Franz Josef chronosequence, New Zealand

During primary succession, the abundance of carbon (C) and nitrogen (N) in soil increases, while phosphorus (P) declines. These changes in nutrient concentrations in organic matter are likely to play an important role in controlling enzyme-mediated nutrient mineralization. We examined how enzyme activity and efficiency changed with successional time in organic and mineral soils taken from the 120 000-year-old Franz Josef soil development sequence, New Zealand, and the relationship between enzyme activity and efficiency and soil nutrient concentrations. We found that the activity of enzymes involved in P mineralization increased with site age across the Franz Josef chronosequence, while the activity of enzymes regulating C and N mineralization declined in organic but not mineral soil. Sulfatase activity peaked at an intermediate-aged site, possibly indicating a transient period of S limitation. The activity of phosphatase enzymes was negatively correlated with the concentration of P in the soil, whereas activity of C-, N- and S-hydrolyzing enzymes was not strongly dependent on nutrient concentrations. When assessed as efficiency (activity per unit microbial biomass), there were strong patterns of increasing efficiency of P-, and decreasing efficiency of C- and N-hydrolyzing enzymes with site age. We suggest that activity patterns for C-, N- and S-hydrolyzing enzymes were obscured by simultaneous and opposing changes in enzyme efficiency and microbial biomass. In mineral soil, efficiency of enzymes was negatively correlated with soil nutrient availability. In contrast, in organic soil, efficiency of C-, N- and S-hydrolyzing enzymes was positively correlated with soil P, while efficiency of P-hydrolyzing enzymes was negatively correlated with soil P. The increase in efficiency of P-hydrolyzing enzymes, and decrease in efficiency of C-, N- and S-hydrolyzing enzymes with site age was accompanied by a shift in microbial community composition towards higher relative abundances of fungi. Changes in enzyme efficiency with site age are likely to be due to both constitutive differences in enzyme production, and down-regulation of enzyme expression.     

Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties

The response of soil microbial communities following changes in land-use is governed by multiple factors. The objectives of this study were to investigate (i) whether soil microbial communities track the changes in aboveground vegetation during succession; and (ii) whether microbial communities return to their native state over time. Two successional gradients with different vegetation were studied at the W. K. Kellogg Biological Station, Michigan. The first gradient comprised a conventionally tilled cropland (CT), mid-succession forest (SF) abandoned from cultivation prior to 1951, and native deciduous forest (DF). The second gradient comprised the CT cropland, early-succession grassland (ES) restored in 1989, and long-term mowed grassland (MG). With succession, the total microbial PLFAs and soil microbial biomass C consistently increased in both gradients. While bacterial rRNA gene diversity remained unchanged, the abundance and composition of many bacterial phyla changed significantly. Moreover, microbial communities in the relatively pristine DF and MG soils were very similar despite major differences in soil properties and vegetation. After >50 years of succession, and despite different vegetation, microbial communities in SF were more similar to those in mature DF than in CT. In contrast, even after 17 years of succession, microbial communities in ES were more similar to CT than endpoint MG despite very different vegetation between CT and ES. This result suggested a lasting impact of cultivation history on the soil microbial community. With conversion of deciduous to conifer forest (CF), there was a significant change in multiple soil properties that correlated with changes in microbial biomass, rRNA gene diversity and community composition. In conclusion, history of land-use was a stronger determinant of the composition of microbial communities than vegetation and soil properties. Further, microbial communities in disturbed soils apparently return to their native state with time.