Evolution of avian influenza viruses

Although influenza viruses can infect a wide variety of birds and mammals, the natural host of the virus is wild waterfowl, shorebirds, and gulls. When other species of animals, including chickens, turkeys, swine, horses, and humans, are infected with influenza viruses, they are considered aberrant hosts. The distinction between the normal and aberrant host is important when describing virus evolution in the different host groups. The evolutionary rate of influenza virus in the natural host reservoirs is believed to be slow, while in mammals the rate is much higher. The higher rate of evolution in mammals is thought to be a result of selective pressure on the virus to adapt to an aberrant host species. Chickens and turkey influenza virus isolates have previously and incorrectly been lumped together with wild waterfowl, gull, and shorebird influenza viruses when determining rates of evolutionary change. To determine mutational and evolutionary rates of a virus in any host species, two primary assumptions must be met: first, all isolates included in the analysis must have descended from a single introduction of the virus, and second, the outbreak must continue long enough to determine a trend. For poultry, three recent outbreaks of avian influenza meet these criteria, and the sequences of the hemagglutinin and nonstructural genes were compared. Sequences from all three outbreaks were compared to an avian influenza virus consensus sequence, which at the amino acid level is highly conserved for all the internal viral proteins. The consensus sequence also provides a common point of origin to compare all influenza viruses. The evolutionary rates determined for all three outbreaks were similar to what is observed in mammals, providing strong evidence of adaptation of influenza to the new host species, chickens and turkeys.     

Persistence of avian influenza viruses in water

Persistence of five avian influenza viruses (AIVs) derived from four waterfowl species in Louisiana and representing five hemagglutinin and neuraminidase subtypes was determined in distilled water at 17 C and 28 C. Infectivity was determined over 60 days by microtiter endpoint titration. One AIV was tested over 91 days at 4 C. Linear regression models for these viruses predicted that an initial concentration of 1 x 10(6) TCID50/ml water could remain infective for up to 207 days at 17 C and up to 102 days at 28 C. Significant differences in slopes for AIV persistence models were detected between treatment temperatures and among viruses. Results suggest that these viruses are adapted to transmission on waterfowl wintering habitats. Results also suggest a potential risk associated with waterfowl and domestic poultry sharing a common water source.     

The susceptibility of culture cells to avian influenza viruses

The susceptibilities of culture cells to twelve avian influenza virus strains were determined with ten established cell lines including MDCK and ESK cells and three primary culture cells. The established cell lines derived from embryonic swine kidney (ESK) and chicken kidney (CK) primary culture cells were more sensitive to the avian influenza viruses than the other eleven cells. The ESK cell had a particularly higher infective titer than the MDCK cell with and without trypsin supplement in culture medium, and dispersion of the infective titers was narrower than that of the MDCK cell. The ESK cell is a suitable candidate for routine work on avian influenza viruses in laboratories.     

2013—2014年H7亚型禽流感病毒遗传进化分析

对2013—2014年15株不同来源的H7亚型禽流感病毒国内分离株进行了基因组测序与遗传进化分析。结果显示,15株H7亚型禽流感病毒具有遗传多样性,可分为2种亚型:13株为H7N9亚型,2株为H7N3亚型。HA蛋白裂解位点附近氨基酸分析显示所有H7亚型流感分离株均为低致病性毒株。基因组遗传进化分析显示,13株H7N9亚型禽流感病毒均与2013年人源分离株同源性较高,但具有2种遗传学特性,13株病毒的PB2、PA、HA、NP、NA、M和NS基因高度同源,而PB1基因来源于2个不同分支。2株H7N3亚型流感病毒与国内鸭源分离株同源性较高。15株H7亚型禽流感病毒PB2蛋白均未出现627K、701N等与哺乳动物适应性相关的氨基酸变异。13株H7N9亚型禽流感病毒HA裂解位点附近氨基酸(EIPKGR/GL)与人源H7N9病毒一致,且HA蛋白和M2蛋白分别具有与哺乳动物适应性和金刚烷胺耐药性相关的标志性变异,而2株H7N3亚型禽流感病毒未出现上述氨基酸变异。     

Pathogenicity of avian influenza viruses isolated from wild mallard ducks and domestic turkeys

Groups of turkeys were exposed to different isolates of avian influenza virus from wild mallard ducks and domestic turkeys by the intracerebral, intravenous, intratracheal, and intra-airsac routes, and pathogenicity indices were calculated. For the intracerebral pathogenicity study, body weight was also measured. For intravenous, intratracheal, and intra-airsac pathogenicity studies, necropsy lesions were scored and serological responses were recorded. Only the intracerebral pathogenicity index and body weight gain post intracerebral infection demonstrated any differences between isolates. The other procedures failed to demonstrate any pathogenicity whatsoever. There was a correlation (R = 0.73) between intracerebral pathogenicity index and reduced weight gain postinfection. These studies suggest that growth suppression may be an objective measure of pathogenic potential of influenza viruses found to be nonpathogenic by other methods.     

类人猪H3N2流感病毒与禽H5流感病毒重组:一个潜在的公共威胁

将2007年7月-2008年10月从吉林省猪群中分离到的3株H3N2亚型流感病毒,分别命名为A/swine/Jilin/A/2007(Sw/Jilin/A/07),A/swine/Jilin/B/2007(Sw/Jilin/B/07)和A/swine/Jilin/C/2008(Sw/Jmn/C/08).结合已知猪流感病毒(SIV)内部基因序列,设计合成6时特异性引物,通过RT-PCR技术分别扩增出6段内部基因,并与GenBank中相关序列进行比较,分析3株流感病毒内部基因的遗传进化关系.结果表明:在PB2、PB1、PA和NP的进化树上,3株H3N2分离株处于近代人源谱系内;在M和NS进化树中,Sw/Jilin/A/07和Sw/Jilin/B/07处于近代人源谱系内,而Sw/Jilin/C/08与禽源谱系内的H5亚型病毒亲缘关系最近.     

Intracerebral pathogenicity for chickens of avian influenza viruses isolated from free-living waterfowl in Japan

The pathogenicity for chickens of 91 strains of avian influenza A virus isolated from such free-living waterfowl as whistling swan, pintail, tufted duck, mallard and black-tailed gull in Japan was tested. The majority of the virus strains infected and were pathogenic for the chickens. The virulence of these viruses seemed not to be as high as that of fowl plague virus. There were no significant differences in the intracerebral index score among the viruses belonging to the same subtype, irrespective of year of isolation or host.     

近年来中国H9亚型禽流感分离株谱系分析

从GenBank中下载所有来自中国（含港、澳、台）的H9亚型禽流感病毒血凝素基因885条核苷酸序列（长度≥900bp）,用MEGA5.0软件进行谱系分析。结果表明我国近年来H9亚型禽流感病毒以第h9.4.2.5分支为主（代表株为A/chicken/Guangxi/55/2005）,而不是WHO新近报告所列出的4株病毒（A/Quail/HongKong/G1/97、A/chicken/HongKong/G9/97、A/duck/HongKong/Y280/97、A/HongKong/33982/2009）所代表的分支。此分析结果对于研制针对这一病毒感染的疫苗有重要指导意义。     

Relationships of influenza a viruses with avian subtype 1 hemagglutinin including the fowl plague viruses

Seven influenza A viruses with avian subtype 1 hemagglutinin (Hav1) were compared on the basis of neutralization in embryonated chicken eggs, hemagglutination-inhibition, neuraminidase-inhibition, and plaque size determination in a MVPK-1 cell line. One virus, influenza A/turkey/Oregon/71 was avirulent, whereas the other six isolates were virulent for avian species. The seven viruses were placed into four groups based on the above criteria: Group 1. Influenza A/FPV/Dutch/27, A/FPV/Brescia/02, and A/FPV/Steele/59; Group 2. A/FPV/Rostock/34, and A/FPV/Alexandria/45; Group 3. A/turkey/England/63; and Group 4. A/turkey/Oregon/71. The similarities and dissimilarities provide information as to the antigenic spectrum of the viruses that will be of importance in future vaccination studies.     

禽流感病毒对人类健康的危险

本文根据近年来国内外大量相关研究报道,从流感病毒的生物学特性、人类流感病毒的历史与禽流感病毒的关系、近年人类感染禽流感病毒H5N1的发生情况与H5N1病毒的进化、实验室诊断和防治技术现状等方面,系统论述并提出禽流感病毒对人类健康已经构成危险,再次强调必须及时监测和识别新的流感毒株,以有效预防和控制该病发生和传播。     

Molecular characterization of low pathogenic avian influenza viruses, isolated from food products imported into Singapore

We have completed the genetic characterization of all eight gene segments for four low pathogenic avian influenza (LPAI) viruses. The objective of this study was to detect the presence of novel signatures that may serve as early warning indicators of the conversion of LPAI viruses to high pathogenic avian influenza (HPAI) viruses. This study included three H5N2 and one H5N3 viruses that were isolated from live poultry imported into Singapore as part of the national avian influenza virus (AIV) surveillance program. Based on the molecular criterion of the World Organisation for Animal Health (OIE), sequence analysis with the translated amino acid (aa) sequence of the hemagglutinin (HA) gene revealed the absence of multibasic aa at the HA cleavage site, identifying all four virus isolates as LPAI. Detailed phylogenetic tree analyses using the HA and neuraminidase (NA) genes clustered these isolates in the Eurasian H5 lineage, but away from the HPAI H5 subtypes. This analysis further revealed that the internal genes clustered to different avian and swine subtypes, suggesting that the four isolates may possibly share their ancestry with these different influenza subtypes. Our results suggest that the four LPAI isolates in this study contained mainly avian signatures, and the phylogenetic tree for the internal genes further suggests the potential for reassortment with other different circulating avian subtypes. This is the first comprehensive report on the genetic characterization of LPAI H5N2/3 viruses isolated in South-East Asia.     

The non-specific stimulation of avian peripheral blood lymphocytes from uninfected chickens by paramyxoviruses and influenza viruses

Avian paramyxovirus-3 was mitogenic to peripheral blood lymphocytes (PBL) from about half the normal birds sampled from 3 inbred flocks. Eight other myxoviruses including Newcastle disease virus, Sendai virus and influenza virus were also irregularly mitogenic. This could complicate in vitro assays for specific immunity.     

两株鸭源H5N1亚型禽流感病毒的序列分析及致病性研究

本研究对2010年在湖北活禽市场监测分离到的两株鸭源H5N1亚型禽流感病毒(AIV) (HuB/495/10和HuB/513/10)进行了序列分析和致病性试验研究,以了解湖北地区H5N1亚型AIV的生物学特性差异.序列分析显示:2株病毒全基因组核苷酸同源性在97.3 ％～98.6％,2株病毒的8个节段基因均与青海和香港分离的野鸟源病毒A/great crested-grebe/Qinghai/1/2009 (H5N1)和A/black-crowned night heron/Hong Kong/659/2008 (H5N1)的核苷酸高度同源,HA蛋白裂解位点序列基序为341RRRKR345,呈现典型的高致病力分子特征.以105 EID50/100 μL病毒剂量感染4周龄SPF鸭发现:HuB/495/10和HuB/513/10对鸭的致死率分别为100％和20％,病毒在鸭体内呈全身性复制并可通过呼吸道和消化道向外排毒;不同滴度的病毒感染6周龄BALB/c小鼠,HuB/495/10和HuB/513/10的MLD50分别为1.38 log10 EID50和1.68 log10 EID50,对小鼠表现为高致病力,均在肺脏中高拷贝复制.