Labile, recalcitrant, and microbial carbon and nitrogen pools of a tallgrass prairie soil in the US Great Plains subjected to experimental warming and clipping

Carbon (C) and nitrogen (N) fluxes are largely controlled by the small but highly bio-reactive, labile pools of these elements in terrestrial soils, while long-term C and N storage is determined by the long-lived recalcitrant fractions. Changes in the size of these pools and redistribution among them in response to global warming may considerably affect the long-term terrestrial C and N storage. However, such changes have not been carefully examined in field warming experiments. This study used sulfuric acid hydrolysis to quantify changes in labile and recalcitrant C and N fractions of soil in a tallgrass prairie ecosystem that had been continuously warmed with or without clipping for about 2.5 years. Warming significantly increased labile C and N fractions in the unclipped plots, resulting in increments of 373 mg C kg⁻¹ dry soil and 15 mg N kg⁻¹ dry soil, over this period whilst clipping significantly decreased such concentrations in the warmed plots. Warming also significantly increased soil microbial biomass C and N in the unclipped plots, and increased ratios of soil microbial/labile C and N, indicating an increase in microbial C- and N-use efficiency. Recalcitrant and total C and N contents were not significantly affected by warming. For all measured pools, only labile and microbial biomass C fractions showed significant interactions between warming and clipping, indicating the dependence of the warming effects on clipping. Our results suggest that increased soil labile and microbial C and N fractions likely resulted indirectly from warming increases in plant biomass input, which may be larger than warming-enhanced decomposition of labile organic compounds.     

Ecosystem partitioning of N-glycine after long-term climate and nutrient manipulations, plant clipping and addition of labile carbon in a subarctic heath tundra

Low temperatures and high soil moisture restrict cycling of organic matter in arctic soils, but also substrate quality, i.e. labile carbon (C) availability, exerts control on microbial activity. Plant exudation of labile C may facilitate microbial growth and enhance microbial immobilization of nitrogen (N). Here, we studied ¹⁵N label incorporation into microbes, plants and soil N pools after both long-term (12 years) climate manipulation and nutrient addition, plant clipping and a pulse-addition of labile C to the soil, in order to gain information on interactions among soil N and C pools, microorganisms and plants. There were few effects of long-term warming and fertilization on soil and plant pools. However, fertilization increased soil and plant N pools and increased pool dilution of the added ¹⁵N label. In all treatments, microbes immobilized a major part of the added ¹⁵N shortly after label addition. However, plants exerted control on the soil inorganic N concentrations and recovery of total dissolved ¹⁵N (TD¹⁵N), and likewise the microbes reduced these soil pools, but only when fed with labile C. Soil microbes in clipped plots were primarily C limited, and the findings of reduced N availability, both in the presence of plants and with the combined treatment of plant clipping and addition of sugar, suggest that the plant control of soil N pools was not solely due to plant uptake of soil N, but also partially caused by plants feeding labile C to the soil microbes, which enhanced their immobilization power. Hence, the cycling of N in subarctic heath tundra is strongly influenced by alternating release and immobilization by microorganisms, which on the other hand seems to be less affected by long-term warming than by addition or removal of sources of labile C.     

Environmental stress response limits microbial necromass contributions to soil organic carbon

The majority of dead organic material enters the soil carbon pool following initial incorporation into microbial biomass. The decomposition of microbial necromass carbon (C) is, therefore, an important process governing the balance between terrestrial and atmospheric C pools. We tested how abiotic stress (drought), biotic interactions (invertebrate grazing) and physical disturbance influence the biochemistry (C:N ratio and calcium oxalate production) of living fungal cells, and the subsequent stabilization of fungal-derived C after senescence. We traced the fate of ¹³C-labeled necromass from ‘stressed’ and ‘unstressed’ fungi into living soil microbes, dissolved organic carbon (DOC), total soil carbon and respired CO₂. All stressors stimulated the production of calcium oxalate crystals and enhanced the C:N ratios of living fungal mycelia, leading to the formation of ‘recalcitrant’ necromass. Although we were unable to detect consistent effects of stress on the mineralization rates of fungal necromass, a greater proportion of the non-stressed (labile) fungal necromass C was stabilised in soil. Our finding is consistent with the emerging understanding that recalcitrant material is entirely decomposed within soil, but incorporated less efficiently into living microbial biomass and, ultimately, into stable SOC.     

Warming and grazing affect soil labile carbon and nitrogen pools differently in an alpine meadow of the Qinghai�CTibet Plateau in China

Purpose

Small but highly bioactive labile carbon (C) and nitrogen (N) pools are of great importance in controlling terrestrial C and N fluxes, whilst long-term C and N storage is determined by less labile but relatively large sizes of C and N pools. Little information is available about the effects of global warming and grazing on different forms of C and N pools in the Qinghai?CTibet Plateau of China. The aim of this study was to investigate the effects of warming and grazing on the sizes of different soil labile C and N pools and N transformation in this region.

Materials and methods

A free-air temperature enhancement system in a controlled warming?Cgrazing experiment had been implemented since May 2006. Infrared heaters were used to manipulate temperature, and a moderate grazing intensity was simulated by Tibetan sheep. After 3 years?? warming, soil samples were taken from the four treatment plots: no warming with no grazing; no warming with grazing; warming with no grazing; and warming with grazing. Concentrations of inorganic N in the 40?Ccm soil profiles were measured by a flow injection analyser. Microbial biomass C (MBC) and microbial biomass N (MBN) were measured by the fumigation?Cextraction method, and soluble organic C (SOC) and soluble organic N (SON) were determined by high-temperature catalytic oxidation. Total N (TN), C isotope composition (??¹³C) and N isotope composition (??¹⁵N) were determined using an isotope ratio mass spectrometer. Net N transformation under low temperature was studied in a laboratory incubation experiment.

Results and discussion

Warming and grazing treatments affected soil C and N pools differently, and these effects varied with soil depth. Warming significantly increased TN, MBC, MBN, and SON and decreased ??¹³C at the 10?C20 and 20?C30 cm soil depths, whilst grazing generally decreased SON at the 10?C20 and 20?C30 cm, and MBC at 20?C30 cm. At the 0?C10 cm depth, neither warming nor grazing alone affects these soil parameters significantly, indicating that there could be considerable perturbation on the soil surface. However, grazing alone increased NO ₃ ^? ?CN, total inorganic N, SOC and ??¹⁵N at the 0?C10 cm depth. Incubated at 4°C, warming (particularly with grazing) led to net immobilization of N, but no-warming treatments led to net N mineralization, whilst nitrification was strong across all these treatments. Correlations between MBC and SOC, and TN and MBN or SON were positive. However, SON was less well correlated with TN and MBN compared with the highly positive correlations between SOC and MBC.

Conclusions

It is clearly demonstrated that warming and grazing affected labile C and N pools significantly, but differently after 3 years?? treatments: Warming tended to enlarge labile C and N pools through increased litter inputs, whilst grazing tended to increase inorganic N pools, decrease SON and accelerate N cycling. Grazing might modify the mode that warming affected soil C and N pools through its strong impacts on microbial processes and N cycling. These results suggested that interactive effects of warming and grazing on C and N pools might have significant implications for the long-term C and N storage and productivity of alpine meadow ecosystem in the Qinghai?CTibet Plateau of China.     

Effects of litter addition and warming on soil carbon, nutrient pools and microbial communities in a subarctic heath ecosystem

Climatic warming leads to the expansion of deciduous shrubs and trees in the Arctic. This leads to higher leaf litter inputs, which together with warming may alter the rate of carbon and nutrient cycling in the arctic ecosystems. We assessed effects of factorial warming and additional litter on the soil ecosystem of a subarctic heath in a 7-year-long field experiment. Fine root biomass, dissolved organic carbon (DOC) and total C concentration increased in response to warming, which probably was a result of the increased vegetation cover. Litter addition increased the concentration of inorganic P in the uppermost 5 cm soil, while decreasing the pool of total P per unit area of the organic profile and having no significant effects on N concentrations or pools. Microbial biomass C and N were unaffected by the treatments, while the microbial biomass P increased significantly with litter addition. Soil ergosterol concentration was also slightly increased by the added litter in the uppermost soil, although not statistically significantly. According to a principal component analysis of the phospholipid fatty acid profiles, litter addition differed from the other treatments by increasing the relative proportion of biomarkers for Gram-positive bacteria. The combined warming plus litter addition treatment decreased the soil water content in the uppermost 5 cm soil, which was a likely reason for many interactions between the effects of warming and litter addition. The soil organic matter quality of the combined treatment was also clearly different from the control based on a near-infrared reflectance (NIR) spectroscopic analysis, implying that the treatment altered the composition of soil organic matter. However, it appears that the biological processes and the microbial community composition responded more to the soil and litter moisture conditions than to the change in the quality of the organic matter.     

Significance of temperature and water availability for soil phosphorus transformation and microbial community composition as affected by fertilizer sources

Little is known about the effects of temperature and drying–rewetting on soil phosphorus (P) fractions and microbial community composition in regard to different fertilizer sources. Soil P dynamics and microbial community properties were evaluated in a soil not fertilized or fertilized with KH₂PO₄ or swine manure at two temperatures (10 and 25 °C) and two soil water regimes (continuously moist and drying–rewetting cycles) in laboratory microcosm assays. The P source was the dominant factor determining the sizes of labile P fractions and microbial community properties. Manure fertilization increased the content of labile P, microbial biomass, alkaline phosphomonoesterase activity, and fatty acid contents, whereas KH₂PO₄ fertilization increased the content of labile inorganic P and microbial P. Water regimes, second to fertilization in importance, affected more labile P pools, microbial biomass, alkaline phosphomonoesterase activity, and fatty acid contents than temperature. Drying–rewetting cycles increased labile P pools, decreased microbial biomass and alkaline phosphomonoesterase activity, and shaped the composition of microbial communities towards those with greater percentages of unsaturated fatty acids, particularly at 25 °C in manure-fertilized soils. Microbial C and P dynamics responded differentially to drying–rewetting cycles in manure-fertilized soils but not in KH₂PO₄-fertilized soils, suggesting their decoupling because of P sources and water regimes. Phosphorus sources, temperature, and water regimes interactively affected the labile organic P pool in the middle of incubation. Overall, P sources and water availability had greater effects on P dynamics and microbial community properties than temperature.     

Five-year warming does not change soil organic carbon stock but alters its chemical composition in an alpine peatland

Climate warming may promote soil organic carbon(SOC) decomposition and alter SOC stocks in terrestrial ecosystems, which would in turn affect climate warming. We manipulated a warming experiment using open-top chambers to investigate the effect of warming on SOC stock and chemical composition in an alpine peatland in Zoigê on the eastern Tibetan Plateau, China. Results showed that 5 years of warming soil temperatures enhanced ecosystem respiration during the growing season, promoted above-and be...     

Responses of soil microbial communities and functions associated with organic carbon mineralization to nitrogen addition in a Tibetan grassland

Alpine grasslands with a high soil organic carbon(SOC)storage on the Tibetan Plateau are experiencing rapid climate warming and anthropogenic nitrogen(N)deposition;this is expected to substantially increase the soil N availability,which may impact carbon(C)cycling.However,little is known regarding how N enrichment influences soil microbial communities and functions relative to C cycling in this region.We conducted a 4-year field experiment on an alpine grassland to evaluate the effects of four different rates of N addition(0,25,50,and 100 kg N ha^-1 year^-1)on the abundance and community structure(phospholipid fatty acids,PLFAs)of microbes,enzyme activities,and community level physiological profiles(CLPP)in soil.We found that N addition increased the microbial biomass C(MBC)and N(MBN),along with an increased abundance of bacterial PLFAs,especially Gram-negative bacterial PLFAs,with a decreasing ratio of Gram-positive to Gram-negative bacteria.The N addition also stimulated the growth of fungi,especially arbuscular mycorrhizal fungi,reducing the ratio of fungi to bacteria.Microbial functional diversity and activity of enzymes involved in C cycling(β-1,4-glucosidase and phenol oxidase)and N cycling(β-1,4-N-acetyl-glucosaminidase and leucine aminopeptidase)increased after N addition,resulting in a loss of SOC.A meta-analysis showed that the soil C/N ratio was a key factor in the response of oxidase activity to N amendment,suggesting that the responses of soil microbial functions,which are linked to C turnover relative to N input,primarily depended upon the soil C/N ratio.Overall,our findings highlight that N addition has a positive influence on microbial communities and their associated functions,which may reduce soil C storage in alpine grasslands under global change scenarios.     

Nutrient management effects on organic carbon pools in a sandy loam soil under rice-wheat cropping

Agricultural management practices are known to influence soil organic C. While changes in total organic C (TOC) are relatively less discernible over short to medium-term, some extractable pools of TOC are considered early indicators of changes in TOC. Therefore, to devise nutrient management practices that can lead to C sequestration, it is important to study their effect on soil organic C pools that may respond rapidly to management. We studied the impact of balanced (NPK) and imbalanced (N, NP, NK and PK) application of fertilizer nutrients without and with farmyard manure (FYM) on total and labile pools of organic C viz. water soluble (WEOC), potassium permanganate oxidizable (KMnO₄-C), microbial biomass (MBC) and fractions of decreasing oxidizability after 5-cycles of rice-wheat cropping. Integrated use of NPK and FYM significantly increased TOC and extractable C pools in both surface (0–7.5 cm) and sub-surface (7.5–15 cm) soil. Majority of TOC (72%) was stabilized in less labile and recalcitrant fractions; the magnitude being higher under balanced (NPK+FYM) than imbalanced nutrient management (N+FYM). The results showed that balanced fertilizer application conjointly with FYM besides enlarging TOC pool favorably impacts soil organic matter composition under rice-wheat system.     

Characterizing the relationships between soil organic matter components and microbial function and composition along a tillage disturbance gradient

We studied the effect of no-till (disc seeder), conventional-till (tine scarifier+disc seeder) and rotary-till (rotary hoe+disc seeder) management on soil organic matter (SOM) components, rates of carbon (C) and nitrogen (N) cycling, substrate utilization and microbial community composition. We hypothesized that labile SOM fractions are sensitive to changes in tillage techniques and, in turn mediate any tillage-induced changes in microbial function and composition. A replicated field site was established in May 1998 in the semi-arid agricultural region of Western Australia and soils were collected in September 2004. We found soil pH varied between different tillage techniques as an initial lime application was mixed to deeper soil depths in rotary-till soil than no-till and conventional-till soil. Total-C was greater in surface soil and lower in subsurface soil from no-till and conventional-till plots than from rotary-till plots, but there was no effect of tillage technique on total-C when averaged across soil depths. Light (specific density <1.0 g cm^?3) fraction organic matter (LFOM), dissolved organic matter (DOM) and microbial biomass (MB) C and N pools, and rates of C and N cycling all tended to decrease with soil depth. In general, LFOM-C and N, dissolved organic C (DOC) and microbial biomass carbon (MB-C), soil respiration, cellulase activity, gross immobilization rates were positively correlated (r>0.50) and were greater in no-till and conventional-till soil than rotary-till soil both within, and across soil depths. These soil variables generally increased (r>0.5) with increasing soil pH. Dissolved organic N and gross N mineralization were positively correlated (r>0.90) but neither was affected by tillage techniques. No-till soil had greater utilization of carboxylic acids and lower utilization of amino acids and carbohydrates than conventional-till and rotary-till soil; surface soil also had greater utilization of carboxylic acids than subsurface soil. In turn, substrate utilization differed between soil depths, and between no-till soil and conventional-till and rotary-till soil; these differences were correlated with soil pH, total-N, DOC, LFOM-N and microbial biomass nitrogen (MB-N). Bacterial and fungal biomasses generally decreased with soil depth and were greater in no-till and conventional-till soil than rotary-till soil. Microbial community composition differed between all tillage techniques and soil depths; these differences were correlated with soil textural classes, soil pH, and total, LFOM, DOM and microbial C and N pools. These results indicate that most tillage-induced changes to soil properties were associated with the greater soil disturbance under rotary-till than under no-till or conventional-till management. Our results indicate that tillage-induced changes to soil pH, and LFOM, DOM and microbial biomass pools are likely to be important regulators of the rates of C and N cycling, substrate utilization and microbial community composition in this coarse textured soil.     

Experimental warming effects on the microbial community of a temperate mountain forest soil

Soil microbial communities mediate the decomposition of soil organic matter (SOM). The amount of carbon (C) that is respired leaves the soil as CO₂ (soil respiration) and causes one of the greatest fluxes in the global carbon cycle. How soil microbial communities will respond to global warming, however, is not well understood. To elucidate the effect of warming on the microbial community we analyzed soil from the soil warming experiment Achenkirch, Austria. Soil of a mature spruce forest was warmed by 4 °C during snow-free seasons since 2004. Repeated soil sampling from control and warmed plots took place from 2008 until 2010. We monitored microbial biomass C and nitrogen (N). Microbial community composition was assessed by phospholipid fatty acid analysis (PLFA) and by quantitative real time polymerase chain reaction (qPCR) of ribosomal RNA genes. Microbial metabolic activity was estimated by soil respiration to biomass ratios and RNA to DNA ratios. Soil warming did not affect microbial biomass, nor did warming affect the abundances of most microbial groups. Warming significantly enhanced microbial metabolic activity in terms of soil respiration per amount of microbial biomass C. Microbial stress biomarkers were elevated in warmed plots. In summary, the 4 °C increase in soil temperature during the snow-free season had no influence on microbial community composition and biomass but strongly increased microbial metabolic activity and hence reduced carbon use efficiency.     

Changes of labile and recalcitrant carbon pools under nitrogen addition in a city lawn soil

Purpose

Carbon (C) flux is largely controlled by the highly bio-reactive labile C (LC) pool, while long-term C storage is determined by the recalcitrant C (RC) pool. Soil nitrogen (N) availability may considerably affect changes of these pools. The aim of this study was to investigate the effects of N treatments on soil LC and RC pools.

Materials and methods

A field experiment was conducted in a city lawn soil for 600 days with three N treatments, i.e., the control (0 kg N ha^?1 year^?1), low-N (100 kg N ha^?1 year^?1), and high-N (200 kg N ha^?1 year^?1) treatments. As the N source, NH₄NO₃ solution was added to soil surface monthly. Measurements of LC, RC, and other soil biochemical properties, including pH, soil respiration rates, microbial biomass, and enzymes activities, were taken during the experiment period.

Results and discussion

The low-N and high-N treatments increased 6.3 and 13% of the LC pool, respectively, which was caused by decreased microbial biomass and soil respiration rates under the N treatments. By contrary, the low-N and high-N treatments decreased 5.9 and 12% of the RC pool, respectively. The N addition treatments enhanced phenol oxidase activities. The enhanced oxidase activities decreased new RC input and the increased dissolved organic C stimulated RC pool decomposition. The LC and RC pools were highly influenced by the N treatments, whereas effect of the N treatments on soil organic C was not significant. The N addition treatments also caused soil acidification and reduced bacterial biomass proportion in the soil microbial composition.

Conclusions

The N addition increased the LC pool but decreased the RC pool in the soil. These changes should greatly impact soil long-term C storage.     

Temporal variability in plant and soil nitrogen pools in a high-Arctic ecosystem

This study determined temporal variability in N pools, both aboveground and belowground, across two contrasting plant communities in high-Arctic Spitsbergen, Svalbard (78°N). We measured N pools in plant material, soil microbial biomass and soil organic matter in moist (Alopecurus borealis dominated) and dry (Dryas octopetala dominated) meadow communities at four times during the growing season. We found that plant, microbial and dissolved inorganic and organic N pools were subject to significant, but surprisingly low, temporal variation that was controlled primarily by changes in temperature and moisture availability over the short growing season. This temporal variability is much less than that experienced in other seasonally cold ecosystems such as alpine tundra where strong seasonal partitioning of N occurs between plant and soil microbial pools. While only a small proportion of the total ecosystem N, the microbial biomass represented the single largest of the dynamic N pools in both moist and dry meadow communities (3.4% and 4.6% of the total ecosystem N pool, respectively). This points to the importance of soil microbial community dynamics for N cycling in high-Arctic ecosystems. Microbial N was strongly and positively related to soil temperature in the dry meadow, but this relationship did not hold true in the wet meadow where other factors such as wetter soil conditions might constrain biological activity. Vascular live belowground plant parts represented the single largest plant N pool in both dry and moist meadow, constituting an average of 1.6% of the total N pool in both systems; this value did not vary across the growing season or between plant communities. Overall, our data illustrate a surprisingly low growing season variability in labile N pools in high-Arctic ecosystems, which we propose is controlled primarily by temperature and moisture.     

Dynamics of labile and recalcitrant soil carbon pools in a sorghum free-air CO2 enrichment (FACE) agroecosystem

Experimentation with dynamics of soil carbon pools as affected by elevated CO₂ can better define the ability of terrestrial ecosystems to sequester global carbon. In the present study, 6 N HCl hydrolysis and stable-carbon isotopic analysis (δ¹³C) were used to investigate labile and recalcitrant soil carbon pools and the translocation among these pools of sorghum residues isotopically labeled in the 1998-1999 Arizona Maricopa free air CO₂ enrichment (FACE) experiment, in which elevated CO₂ (FACE: 560 μmol mol⁻¹) and ambient CO₂ (Control: 360 μmol mol⁻¹) interact with water-adequate (wet) and water-deficient (dry) treatments. We found that on average 53% of the final soil organic carbon (SOC) in the FACE plot was in the recalcitrant carbon pool and 47% in the labile pool, whereas in the Control plot 46% and 54% of carbon were in recalcitrant and labile pools, respectively, indicating that elevated CO₂ transferred more SOC into the slow-decay carbon pool. Also, isotopic mixing models revealed that increased new sorghum residue input to the recalcitrant pool mainly accounts for this change, especially for the upper soil horizon (0-30 cm) where new carbon in recalcitrant soil pools of FACE wet and dry treatments was 1.7 and 2.8 times as large as that in respective Control recalcitrant pools. Similarly, old C in the recalcitrant pool under elevated CO₂ was higher than that under ambient CO₂, indicating that elevated CO₂ reduces the decay of the old C in recalcitrant pool. Mean residence time (MRT) of bulk soil carbon at the depth of 0-30 cm was significantly longer in FACE plot than Control plot by the averages of 12 and 13 yr under the dry and wet conditions, respectively. The MRT was positively correlated to the ratio of carbon content in the recalcitrant pool to total SOC and negatively correlated to the ratio of carbon content in the labile pool to total SOC. Influence of water alone on the bulk SOC or the labile and recalcitrant pools was not significant. However, water stress interacting with CO₂ enhanced the shift of the carbon from labile pool to recalcitrant pool. Our results imply that terrestrial agroecosystems may play a critical role in sequestrating atmospheric CO₂ and mitigating harmful CO₂ under future atmospheric conditions.     

Labile pools of organic matter and microbial biomass in the surface soils under shifting cultivation in northern Thailand

In order to analyze the N mineralization process under shifting cultivation in northern Thailand, labile pools of soil organic matter were studied, which were considered to be the factors contributing to the N mineralization process. Organic C, (organic + NH₄ ⁺)-N, and hexose-C were extracted from fresh soils in the surface 0–5 cm layers with a 0.5 M K₂S₀. solution at 110°C in an autoclave (fraction A) or at room temperature with a reciprocal shaker (fraction B), and analyzed as labile pools of organic matter. In the traditional shifting cultivation system, the content of organic C in fraction A in the fallow fields for 8 to 15 y was 3,710 mg kg^-1 while that in the fallow fields for 1 y and 3 to 5 y was 2,640 and 2,600 mg kg^-1, respectively. A high correlation was observed between the contents of the labile pool in fraction A and total soil organic matter. The ratio of the pool in fraction A to total soil organic matter apparently remained constant through the input-output balance in the pool. The content of the labile pool in fraction B was the highest among the fields cultivated for 1 y after the slash and burn practice and it decreased in the course of the fallow period. The content of organic C was 548 mg kg^-1 in the fields cultivated for 1 y and 235 mg kg^-1 in the fallow fields for 8-15 y, respectively. There was a reverse relation between the contents of the pool in fraction B and microbial biomass. Therefore, the origin of the pool in fraction B was attributed to the microbial debris associated mainly with a decrease in the soil moisture content in the dry season. On the other hand, in the relatively intensive cultivation system, there was no significant difference in the contents of the labile pools both in fractions A and B among the land use stages, suggesting that the preservation mechanism of these pools, which was observed in the traditional cultivation system, did not operate well in the intensive system. In alternative farming systems in future, it will be essential to apply organic materials to soils to supply organic matter and to maintain the microbial biomass.     

Decomposition temperature sensitivity of isolated soil organic matter fractions

The general consensus is that a warming climate will result in the acceleration of soil organic matter (SOM) decomposition, thus acting as a potential positive feedback mechanism. However, the debate over the relative temperature sensitivity of labile versus recalcitrant SOM has not been fully resolved. We isolated acid hydrolysis residues to represent a recalcitrant pool of SOM and particulate organic matter (POM) to represent a labile pool of SOM, and incubated each at different temperatures to determine temperature sensitivity of decomposition. Short-term incubations of POM generated results consistent with published experiments (i.e., greater proportion of C respired and lower Q₁₀ than whole soil), while incubations of acid hydrolysis residues did not. The contrasting results illustrate the difficulty in assessing temperature sensitivity of labile versus stable SOM decomposition, partly because of the inability to quantitatively isolate labile versus stable SOM pools and to be sufficiently certain that respiration responses to temperature are not masked by processes such as enhanced stabilization or microbial inhibition/adaptation. Further study on the temperature sensitivity of decomposition of isolated SOM fractions is necessary to better explain and predict temperature responses of bulk SOM decomposition.     

Soil organic matter and the extracellular microbial matrix show contrasting responses to C and N availability

An emerging paradigm in soil science suggests microbes can perform ‘N mining’ from recalcitrant soil organic matter (SOM) in conditions of low N availability. However, this requires the production of extracellular structures rich in N (including enzymes and structural components) and thus defies stoichiometric expectation. We set out to extract newly synthesised peptides from the extracellular matrix in soil and compare the amino acid (AA) profiles, N incorporation and AA dynamics in response to labile inputs of contrasting C/N ratio. Glycerol was added both with and without an inorganic source of N (10% ¹⁵N labelled NH₄NO₃) to a soil already containing a large pool of refractory SOM and incubated for 10 days. The resulting total soil peptide (TSP) and extracellular pools were compared using colorimetric methods, gas chromatography, and isotope ratio mass spectrometry. N isotope compositions showed that the extracellular polymeric substance (EPS) contained a greater proportion of products formed de novo than did TSP, with hydrophobic EPS-AAs (leucine, isoleucine, phenylalanine, hydroxyproline and tyrosine) deriving substantially more N from the inorganic source provided. Quantitative comparison between extracts showed that the EPS contained greater relative proportions of alanine, glycine, proline, phenylalanine and tyrosine. The greatest increases in EPS-peptide and EPS-polysaccharide concentrations occurred at the highest C/N ratios. All EPS-AAs responded similarly to treatment whereas the responses of TSP were more complex. The results suggest that extracellular investment of N (as EPS peptides) is a microbial survival mechanism in conditions of low N/high C which, from an evolutionary perspective, must ultimately lead to the tendency for increased N returns to the microbial biomass. A conceptual model is proposed that describes the dynamics of the extracellular matrix in response to the C/N ratio of labile inputs.     

Incorporation of 13C-labelled rice rhizodeposition carbon into soil microbial communities under different water status

The overall processes by which carbon is fixed by plants in photosynthesis then released into the soil by rhizodeposition and subsequently utilized by soil micro-organisms, links the atmospheric and soil carbon pools. The objective of this study was to determine the plant derived ¹³C incorporated into the phospholipid fatty acid (PLFA) pattern in paddy soil, to test whether utilization of rice rhizodeposition carbon by soil micro-organisms is affected by soil water status. This is essential to understand the importance of flooded conditions in regulating soil microbial community structure and activity in wetland rice systems. Rice plants were grown in soil derived from a paddy system under controlled irrigation (CI), or with continuous waterlogging (CW). Most of the ¹³C-labelled rice rhizodeposition carbon was distributed into the PLFAs 16:0, 18:1ω7 and 18:1ω9 in both the CW and CI treatments. The bacterial PLFAs i15:0 and a15:0, both indicative of gram positive bacteria, were relatively more abundant in the treatments without rice plants. When rice plants were present rates of ¹³C-incorporation into i15:0 and a15:0 was slow; the microbes containing these PLFAs may derive most of their carbon from more recalcitrant C (soil organic matter). PLFAs, 18:1ω7 and 16:1ω7c, indicative of gram negative bacteria showed a greater amount incorporation of labelled plant derived carbon in the CW treatment. In contrast, 18:2ω6,9 indicative of fungi and 18:1ω9 indicative of aerobes but also potentially fungi and plant roots had greater incorporation in the CI treatment. The greater root mass concomitant with lower incorporation of ¹³C into the total PLFA pool in the CW treatment suggests that the microbial communities in wetland rice soil are limited by factors other than substrate availability in flooded conditions. In this study differing soil microbial communities were established through manipulating the water status of paddy soils. Steady state ¹³C labelling enabled us to determine that the microbial community utilizing plant derived carbon was also affected by water status.     

Short-term effects of tillage on mineralization of nitrogen and carbon in soil

Tillage is known to decrease soil organic nitrogen (N) and carbon (C) pools with negative consequences for soil quality. This decrease is thought partly to be caused by exposure of protected organic matter to microbial degradation by the disturbance of soil structure. Little is known, however, about the short-term effects of tillage on mineralization of N and C, and microbial activity. We studied the short-term effects of two types of tillage (conventional plough- and a non-inverting-tillage) on mineralization and microbial N and C pools in a sandy loam under organic plough-tillage management. The release of active and protected (inactive) N by tillage was further studied in the laboratory by use of ¹⁵N labelling of the active pool of soil N followed by simulation of tillage by sieving through a 2 mm sieve. Results showed that the two types of tillage as well as the simulation of tillage had very few effects on mineralization and microbial pools. The simulation of tillage caused, however, a small release of N from a pool which was otherwise protected against microbial degradation. The use of soil crushing for disruption of larger macroaggregates (>425 μm) and chloroform fumigation for perturbation of the microbial biomass increased the release from both active and protected N pools. The relative contribution from the protected N pool was, however, similar in the three treatments (22-27%), thus the pools subjected to mineralization were characterised by similar degree of protection. On the basis of isotopic composition the pools of N mineralised were indistinguishable. This suggests that the released N originated from the same pool, that is the soil microbial biomass. The study points to the microbial pool as the main source of labile N which may be released by tillage, and thus to its importance for sustained soil fertility in agricultural systems.     

Shifts in microbial community and water-extractable organic matter composition with biochar amendment in a temperate forest soil

Biochar amendment in soil has been proposed as a carbon sequestration strategy which may also enhance soil physical and chemical properties such as nutrient and water holding capacity as well as soil fertility and plant productivity. However, biochar may also stimulate microbial activity which may lead to increased soil CO₂ respiration and accelerated soil organic matter (OM) degradation which could partially negate these intended benefits. To investigate short-term soil microbial responses to biochar addition, we conducted a 24 week laboratory incubation study. Biochar produced from the pyrolysis of sugar maple wood at 500 °C was amended at concentrations of 5, 10 and 20 t/ha in a phosphorus-limited forest soil which is under investigation as a site for biochar amendment. The cumulative soil CO₂ respired was higher for biochar-amended samples relative to controls. At 10 and 20 t/ha biochar application rates, the concentration of phospholipid fatty acids (PLFAs) specific to Gram-positive and Gram-negative bacteria as well as actinomycetes were lower than controls for the first 16 weeks, then increased between weeks 16–24, suggesting a gradual microbial adaptation to altered soil conditions. Increases in the ratio of bacteria/fungi and lower ratios of Gram-negative/Gram-positive bacteria suggest a microbial community shift in favour of Gram-positive bacteria. In addition, decreasing ratios of cy17:0/16:1ω7 PLFAs, a proxy used to examine bacterial substrate limitation, suggest that bacteria adapted to the new conditions in biochar-amended soil over time. Concentrations of water-extractable organic matter (WEOM) increased in all samples after 24 weeks and were higher than controls for two of the biochar application rates. Solution-state ¹H NMR analysis of WEOM revealed an increase in microbial-derived short-chain carboxylic acids, lower concentrations of labile carbohydrate and peptide components of soil OM and potential accumulation of more recalcitrant polymethylene carbon during the incubation. Our results collectively suggest that biochar amendment increases the activity of specific microorganisms in soil, leading to increased CO₂ fluxes and degradation of labile soil OM constituents.