Long-term tillage effects on the distribution patterns of microbial biomass and activities within soil aggregates

The effects of tillage on the interaction between soil structure and microbial biomass vary spatially and temporally for different soil types and cropping systems. We assessed the relationship between soil structure induced by tillage and soil microbial activity at the level of soil aggregates. To this aim, organic C (OC), microbial biomass C (MBC) and soil respiration were measured in water-stable aggregates (WSA) of different sizes from a subtropical rice soil under two tillage systems: conventional tillage (CT) and a combination of ridge with no-tillage (RNT). Soil (0–20 cm) was fractionated into six different aggregate sizes (> 4.76, 4.76–2.0, 2.0–1.0, 1.0–0.25, 0.25–0.053, and < 0.053 mm in diameter). Soil OC, MBC, respiration rate, and metabolic quotient were heterogeneously distributed among soil aggregates while the patterns of aggregate-size distribution were similar among properties, regardless of tillage system. The content of OC within WSA followed the sequence: medium-aggregates (1.0–0.25 mm and 1.0–2.0 mm) > macro-aggregates (4.76–2.0 mm) > micro-aggregates (0.25–0.053 mm) > large aggregates (> 4.76 mm) > silt + clay fractions (< 0.053 mm). The highest levels of MBC were associated with the 1.0–2.0 mm aggregate size class. Significant differences in respiration rates were also observed among different sizes of WSA, and the highest respiration rate was associated with 1.0–2.0 mm aggregates. The C_mic/C_org was greatest for the large-macroaggregates regardless of tillage regimes. This ratio decreased with aggregate size to 1.0–0.25 mm. Soil metabolic quotient (qCO₂) ranged from 3.6 to 17.7 mg CO₂ g^− 1 MBC h^− 1. The distribution pattern of soil microbial biomass and activity was governed by aggregate size, whereas the tillage effect was not significant at the aggregate scale. Tillage regimes that contribute to greater aggregation, such as RNT, also improved soil microbial activity. Soil OC, MBC and respiration rate were at their highest levels for 1.0–2.0 mm aggregates, suggesting a higher biological activity at this aggregate size for the present ecosystem.     

Legume–barley intercropping stimulates soil N supply and crop yield in the succeeding durum wheat in a rotation under rainfed conditions

Legume–cereal intercropping is increasingly being appreciated in dryland areas, where severe climatic conditions and intensive agricultural practices, generally dominated by continuous cereal cultivation, determine depletion of soil nutrient resources and decline of soil fertility. This research aimed to assess whether and to what extent a newly introduced legume-based intercropping system is able to ameliorate the biological fertility status of an arable soil in a way that is still noticeable during the succeeding durum wheat cropping season in terms of changes in bacterial community structure, soil C and N pools, and crop yield. A field experiment was carried out under rainfed conditions in Southern Italy on a sandy clay loam soil cultivated with durum wheat following in the rotation a recently established grain legume (pea, faba bean)–barley intercropping. Soil chemical, biochemical and eco-physiological variables together with compositional shifts in the bacterial community structure by LH-PCR fingerprinting were determined at four sampling times during the durum wheat cropping season. Soil fertility was estimated by using a revised version of the biological fertility index. Results showed that even though the microbial biomass was significantly altered, the preceding legume intercrops stimulated C-related functional variables thus leading to an increased release of mineral N, which was larger in crop treatments succeeding pea-based than faba bean-based intercropping. The increased N made available in soil enabled the succeeding durum wheat to achieve an adequate grain yield with a reduced N-fertilizer use. Soil type and environmental conditions rather than crop treatments were major determinants of bacterial community structure. The biological fertility status was not varied, suggesting that in intensively managed rainfed areas long-term crop rotations with intercropped legumes are needed to consistently ameliorate it.     

Contributions of soil biota to C sequestration varied with aggregate fractions under different tillage systems

It is increasingly believed that substantial soil organic carbon (SOC) can be sequestered in conservation tillage system by manipulating the functional groups of soil biota. Soil aggregates of different size provide diverse microhabitats for soil biota and consequently influence C sequestration. Our objective was to evaluate the contributions of soil biota induced by tillage systems to C sequestration among different aggregate size fractions. Soil microbial and nematode communities were examined within four aggregate fractions: large macroaggregates (>2 mm), macroaggregates (2–1 mm), small macroaggregates (1–0.25 mm) and microaggregates (<0.25 mm) isolated from three tillage systems: no tillage (NT), ridge tillage (RT) and conventional tillage (CT) in Northeast China. Soil microbial and nematode communities varied across both tillage systems and aggregate fractions. The activity and abundance of microbes and nematodes were generally higher under NT and RT than under CT. Among the four aggregate fractions, soil microbial biomass and diversity were higher in microaggregates, while soil nematode abundance and diversity were higher in large macroaggregates. Structural equation modelling (SEM) revealed that the linkage between microbial and nematode communities and their contributions to soil C accumulation in >1 mm aggregate fractions were different from those in <1 mm aggregate fractions. Higher abundance of arbuscular mycorrhizal fungi (AMF) could enhance C retention within >1 mm aggregates, while more gram-positive bacteria and plant-parasitic nematodes might increase C accumulation within <1 mm aggregates. Our findings suggested that the increase in microbial biomass and nematode abundance and the alteration in their community composition at the micro-niche within aggregates could contribute to the higher C sequestration in conservation tillage systems (NT and RT).     

Eubacterial communities in different soil macroaggregate environments and cropping systems

Different positions within soil macroaggregates, and macroaggregates of different sizes, have different chemical and physical properties which could affect microbial growth and interactions among taxa. The hypothesis that these soil aggregate fractions contain different eubacterial communities was tested using terminal restriction fragment length polymorphism (T-RFLP) of the 16S ribosomal gene. Communities were characterized from two field experiments, located at the Kellogg Biological Station (KBS), MI, USA and the Ohio Agricultural Research and Development Center (OARDC), Wooster, OH, USA. Three soil management regimes at each site were sampled and management was found to significantly affect T-RFLP profiles. The soil aggregate erosion (SAE) method was used to isolate aggregate regions (external and internal regions). Differences between eubacterial T-RFLP profiles of aggregate exteriors and interiors were marginally significant at KBS (accounting for 12.5% of total profile variance), and not significant at OARDC. There were no significant differences among macroaggregate size classes at either site. These results are in general agreement with previous studies using molecular methods to examine microbial communities among different soil macroaggregate size fractions, although further study of communities within different aggregate regions is warranted. Analysis of individual macroaggregates revealed large inter-aggregate variability in community structure. Hence the tertiary components of soil structure, e.g. arrangement of aggregates in relation to shoot residue, roots, macropores, etc., may be more important than aggregate size or intra-aggregate regions in the determination of the types of microbial communities present in aggregates. Direct microscopic counts were also used to examine the bacterial population size in aggregate regions at KBS. The proportion of bacterial cells with biovolumes >0.18 μm³ was higher in aggregate interiors than in exteriors, indicating potentially higher activity in that environment. This proportion was significantly related to percent C of the samples, while total bacterial cell counts were not.     

Contrasting development of soil microbial community structure under no-tilled perennial and tilled cropping during early pedogenesis of a Mollisol

A range of agricultural practices influence soil microbial communities, such as tillage and organic C inputs, however such effects are largely unknown at the initial stage of soil formation. Using an eight-year field experiment established on exposed parent material (PM) of a Mollisol, our objectives were to: (1) to determine the effects of field management and soil depth on soil microbial community structure; (2) to elucidate shifts in microbial community structure in relation to PM, compared to an arable Mollisol (MO) without organic amendment; and (3) to identify the controlling factors of such changes in microbial community structure. The treatments included two no-tilled soils supporting perennial crops, and four tilled soils under the same cropping system, with or without chemical fertilization and crop residue amendment. Principal component (PC) analysis of phospholipid fatty acid (PLFA) profiles demonstrated that microbial community structures were affected by tillage and/or organic and inorganic inputs via PC1 and by land use and/or soil depth via PC2. All the field treatments were separated by PM into two groups via PC1, the tilled and the no-tilled soils, with the tilled soils more developed towards MO. The tilled soils were separated with respect to MO via PC1 associated with the differences in mineral fertilization and the quality of organic amendments, with the soils without organic amendment being more similar to MO. The separations via PC1 were principally driven by bacteria and associated with soil pH and soil C, N and P. The separations via PC2 were driven by fungi, actinomycetes and Gram (−) bacteria, and associated with soil bulk density. The separations via both PC1 and PC2 were associated with soil aggregate stability and exchangeable K, indicating the effects of weathering and soil aggregation. The results suggest that in spite of the importance of mineral fertilization and organic amendments, tillage and land-use type play a significant role in determining the nature of the development of associated soil microbial community structures at the initial stages of soil formation.     

Soil aggregation and bacterial community structure as affected by tillage and cover cropping in the Brazilian Cerrados

Microbial-based indicators of soil quality are believed to be more dynamic than those based on physical and chemical properties. Recent developments in molecular biology based techniques have led to rapid and reliable tools to characterize microbial community structures. We determined the effects of conventional and no-tillage in cropping systems with and without cover crops on bacterial community structure, total organic carbon (TOC) and soil aggregation. Tillage and rotation did not affect TOC from bulk soil. However, TOC was greater in the largest aggregate size class (7.98–19 mm), and had greater mean-weight diameter under no-tillage than under conventional tillage in the 0–5 cm soil layer. Soil bacterial community structure, based on denaturing gradient gel electrophoresis of polymerase chain reaction amplified DNA (PCR/DGGE) using two different genes as biomarkers, 16S rRNA and rpoB genes, indicated different populations in response to cultivation, tillage and depth, but not due to cover cropping. Soil bacterial community structure and meanweight diameter of soil aggregates indicated alterations in soil conditions due to tillage system.     

土壤团聚体氧化亚氮排放潜势与微生物学机制

氧化亚氮（N2O）是主要温室气体之一,土壤是N2O的重要排放源,其排放主要受N2O产生和还原的功能微生物影响。土壤团聚体是由原生颗粒（砂、粉、黏粒）、胶结物质和孔隙组成的土壤基本结构单元。土壤不同粒径团聚体之间因基质和孔隙差异形成特殊独立的微生境被视为N2O的生物化学反应器。在不同的微生境中,N2O产生和还原的功能微生物分布不同,因而土壤不同粒径团聚体N2O排放可能存在差异。目前在不同生态系统土壤全土N2O排放特征的报道较多,而对于不同粒径土壤团聚体N2O排放相对贡献尚不清楚、功能微生物分布还未知、N2O产生和还原热区尚未明确。本文综述了近年来国内外关于土壤团聚体对N2O产生和排放机制的研究,总结了土壤团聚体性状特征对N2O产生和还原的影响,阐述了不同粒径土壤团聚体对N2O排放影响的微生物学机制,进一步明确了今后需加强土壤团聚体N2O产生和还原的热区、环境因子阈值范围的确定、系列功能基因（酶）整体性的研究,以期为N2O模拟排放模型优化提供参考,为土壤N2O减排提供理论依据。     

设施种植模式对土壤细菌多样性及群落结构的影响

为了研究有机和常规设施种植模式及轮作对土壤细菌多样性和群落结构的影响,本研究采用Illumina平台Hiseq 2500高通量测序技术,于2016年6月(作物处于收获期)对北京市顺义区不同设施种植模式(分别为有机设施种植模式和常规设施种植模式下的叶菜连作、茄果连作和叶茄轮作)下土壤细菌进行16S r RNA测序。测序质控后共获得17 278个操作分类单元(operational taxonomic units,OTUs),共计318 851条有效序列。比较不同种植模式和轮作下土壤细菌多样性、细菌群落结构组成、相对丰度及土壤理化性质与细菌群落多样性关系的差异性。结果表明:土壤微生物群落结构在有机和常规设施种植模式下差异明显,有机设施种植土壤细菌多样性高于常规设施种植;有机设施种植下轮作与连作土壤细菌群落结构表现出明显差异,而常规设施种植下,两者没有明显差异;有机种植模式下,轮作土壤细菌群落多样性高于连作土壤;设施种植土壤细菌群落主要属于鞘氨醇单胞菌属(Sphingomonas,5.05%)和芽孢杆菌属(Bacillus,4.84%),相对丰度大于0.5%的共有14个属。有机设施种植土壤含有较多促进植物生长、有机质分解的细菌,常规设施种植土壤中降解化学杀虫剂、防治土壤病害、促进硝化过程的细菌较多。RDA分析结果显示土壤细菌群落主要受全磷、速效磷、有机质的影响。Tumebacillus、Candidatus Solibacter和Acidothermus都是分解有机质、利用碳源的细菌属,与土壤有机质含量呈正相关关系。由此可见,设施条件下,有机和常规种植土壤微生物群落结构的差异性主要源于肥料使用、有害生物防治措施和管理方式的不同。有机设施种植模式下,轮作更有利于发挥其改良土壤营养循环和防治土壤病虫害的作用。上述结果为在微生物水平上研究设施条件下不同种植模式的土壤生态质量差异提供了参考。     

Soil management effects on aggregate stability and biological binding

In order to improve our understanding of soil aggregation, we have studied the relative importance of bonding and binding mechanisms, especially how they scale according to aggregate size and how they are influenced by farming system and different management options. Topsoil samples were collected from four arable sandy loam soils found as two pairs (FP1 and FP2) of neighbouring fields. One of the fields in FP2 had been grown for decades with annual cash crops without application of organic manures, while the other three fields had been managed with diversified crop rotations and manure dressings. Aggregates were segregated from the bulk soil by promoting brittle failure. The samples of soil structural units were fractionated to 4–8 mm, 0.5–1 mm and 0.063–0.25 mm aggregates during a process of air-drying with minimum energy input (e.g. short sieving times). We measured microbial biomass, ergosterol, clay dispersibility, hot-water extractable carbohydrates, and hyphal length. Generally, all four soils showed no significant differences among aggregate size classes in the content of microbial biomass, hot-water extractable carbohydrates and hyphal length. The FP2 soil grown with annual cash crops had significantly lower values for all soil attributes than its neighbouring soil, while a more complex pattern was observed for the FP1 soils. Our results do not indicate scaling according to aggregate size of the binding and bonding mechanisms studied. Results from the three fields with diversified crop rotations indicate satisfactory levels of bonding and binding agents for creation of stable aggregates. Exhaustion of soil organic matter as found in the cash crop system seems to change the way that clay particles interact with the biotic agents in aggregation.     

Soil organic carbon and nutrient content in aggregate‐size fractions of a subtropical rice soil under variable tillage

The effects of tillage on soil organic carbon (SOC) and nutrient content of soil aggregates can vary spatially and temporally, and for different soil types and cropping systems. We assessed SOC and nutrient levels within water‐stable aggregates in ridges with no tillage (RNT) and also under conventional tillage (CT) for a subtropical rice soil in order to determine relationships between tillage, cation concentrations and soil organic matter. Surface soil (0–15 cm) was fractionated into aggregate sizes (>4.76 mm, 4.76–2.00 mm, 2.00–1.00 mm, 1.00–0.25 mm, 0.25–0.053 mm, <0.053 mm) under two tillage regimes. Tillage significantly reduced the proportion of macroaggregate fractions (>2.00 mm) and thus aggregate stability was reduced by 35% compared with RNT, indicating that tillage practices led to soil structural change for this subtropical soil. The patterns in SOC, total N, exchangeable Ca²⁺, Mg²⁺ and total exchangeable bases (TEB) were similar between tillage regimes, but concentrations were significantly higher under RNT than CT. This suggests that RNT in subtropical rice soils may be a better way to enhance soil productivity and improve soil C sequestration potential than CT. The highest SOC was in the 1.00–0.25 mm fraction (35.7 and 30.4 mg/kg for RNT and CT, respectively), while the lowest SOC was in microaggregate (<0.025 mm) and silt + clay (<0.053 mm) fractions (19.5 and 15.7 mg/kg for RNT and CT, respectively). Tillage did not influence the patterns in SOC across aggregates but did change the aggregate‐size distribution, indicating that tillage affected soil fertility primarily by changing soil structure.     

Economic and Soil Environmental Benefits of Using Controlled‐Release Bulk Blending Urea in the North China Plain

Crop production must be increased in order to ensure a sustainable food supply for the growing world population. Controlled‐release urea (CRU) improves nutrient use efficiency and saves labor, but its use in crop production is limited due to its high cost. Bulk blending urea (BBU) consists of both CRU and conventional urea and could be an excellent substitute or replacement for CRU. Nevertheless, its economic benefits and soil environment impact are unknown. A 3‐year field experiment was conducted to investigate the effects of two different nitrogen management practices in terms of economic benefits, soil mineral nitrogen availability, aggregate stability, and soil microbial communities. Split applications of conventional urea (UREA) and a single application of BBU were tested on winter wheat (Triticum aestivum L.) and summer maize (Zea mays L.) in the North China Plain between 2010 and 2013. Crop yields were measured after each harvest, and soil environmental parameters were determined after the 3‐year crop sequence. Relative to UREA, BBU significantly increased net revenue, soil inorganic nitrogen concentration, and the functional diversity of the soil microbial community without adverse effects on the soil bacterial community composition. On the other hand, BBU reduced the amount of soil macro‐aggregates and the mean weight diameter value of soil water‐stable aggregates. Although BBU showed great potential for improving wheat–maize cropping systems in the North China Plain, future studies should focus on optimizing the nitrogen dosage and the CRU ratio in BBU to decrease nitrogen leaching, avoid soil aggregate deterioration, and maintain crop yield. Copyright © 2017 John Wiley & Sons, Ltd.     

Different crop rotation systems as drivers of change in soil bacterial community structure and yield of rice, <Emphasis Type="Italic">Oryza sativa</Emphasis>

Intensive cropping, especially of rice, is considered to contribute to negative effects not only on soil chemical and biological properties but also on long-term grain yield. Appropriate crop rotation is often practiced as an alternative strategy to overcome the negative side effects of intensive cropping. Although soil microbial diversity and community structure have been shown to respond differently to altered agricultural management practices, little is known about possible links between crop rotation and grain yield on bacterial communities in rice paddy soil. In this study, we investigated the impact of specific rotational crops and compared it with intensive rice cultivation. The main crop rice (Oryza sativa) was rotated with maize (Zea mays) and mungbean (Phaseolus aureus) in different combinations in a system cultivating three crops per year. Soil bacterial communities were studied in two different cropping periods using pyrosequencing of the variable V4 region of the 16S rRNA. Our results showed that rotation with alternative crops increased rice yield by 24–46% depending on rotation structure and that bacterial community structure was altered in the presence of mungbean and/or maize compared to that in rice monoculture. In the crop rotation systems, composition, abundance, and diversity of soil bacterial communities were significantly different and higher than those in rice monoculture. Our results show that effects of crop rotation relate to changes in soil bacterial community structure suggesting that appropriate crop rotations provide a feasible practice to maintain the equilibrium in soil microbial environment for sustainable rice cultivation.     

种植方式对玉米不同生长期土壤微生物群落功能多样性的影响

为探讨玉米不同种植方式下土壤微生物群落功能多样性的差异,进行田间定点试验,采用Biolog方法分别研究了4行轮作、4行连作、8行轮作和8行连作的种植方式对玉米种植前、拔节期、抽穗期和收获期土壤微生物功能多样性的影响。结果表明:4种种植方式的土壤微生物均在种植前代谢活性最弱、功能多样性最低,在玉米抽穗期土壤微生物代谢活性最强,功能多样性最高。在种植玉米前,轮作的土壤微生物代谢活性和功能多样性高于连作,8行轮作和4行轮作土壤微生物的物种多样性指数分别比相应的连作高22.93%和11.42%;4行轮作的土壤微生物物种多样性指数比8行轮作低3.17%,而4行连作比8行连作高6.83%。在玉米拔节期、抽穗期及收获期连作土壤微生物功能多样性略高于轮作,且有4行连作大于8行连作的趋势,但差异均未达显著水平。种植前,4种种植模式的土壤微生物对6大类碳源的利用程度整体上都较低,降解碳水化合物类、羧酸类和聚合物类碳源的微生物是种植方式影响的主要土壤微生物类群;随着玉米的生长,土壤微生物对6大类碳源的利用都逐渐增强,玉米拔节期、抽穗期和收获期之间土壤微生物特征碳源没有较大差异,4种种植方式的土壤微生物对聚合物类碳源利用程度差异都不显著。PLS-EDA分析结果表明种植方式对土壤微生物产生较大影响,种植前8行轮作和4行连作的土壤微生物碳源利用模式具有相似性;种植玉米后4种种植方式的土壤微生物对碳源的利用模式存在较大差异,其中4行连作的土壤微生物在玉米拔节期和收获期对碳源的利用模式与其他3种种植方式差异最大。试验说明作物长期连作栽培会影响土壤微生物群落功能,降低土壤微生物物种多样性,引起土壤微生物群落结构与功能的失调。     

Evaluating biodegradability of soil organic matter by its thermal stability and chemical composition

The stability of soil organic matter (SOM) as it relates to resistance to microbial degradation has important implications for nutrient cycling, emission of greenhouse gases, and C sequestration. Hence, there is interest in developing new ways to quantify and characterise the labile and stable forms of SOM. Our objective in this study was to evaluate SOM under widely contrasting management regimes to determine whether the variation in chemical composition and resistance to pyrolysis observed for various constituent C fractions could be related to their resistance to decomposition. Samples from the same soil under permanent pasture, an arable cropping rotation, and chemical fallow were physically fractionated (sand: 2000-50 μm; silt: 50-5 μm, and clay: <5 μm). Biodegradability of the SOM in size fractions and whole soils was assessed in a laboratory mineralization study. Thermal stability was determined by analytical pyrolysis using a Rock-Eval pyrolyser, and chemical composition was characterized by X-ray absorption near-edge structure (XANES) spectroscopy at the C and N K-edges. Relative to the pasture soil, SOM in the arable and fallow soils declined by 30% and 40%, respectively. The mineralization bioassay showed that SOM in whole soil and soil fractions under fallow was less susceptible to biodegradation than that in other management practices. The SOM in the sand fraction was significantly more biodegradable than that in the silt or clay fractions. Analysis by XANES showed a proportional increase in carboxylates and a reduction in amides (protein) and aromatics in the fallow whole soil compared to the pasture and arable soils. Moreover, protein depletion was greatest in the sand fraction of the fallow soil. Sand fractions in fallow and arable soils were, however, relatively enriched in plant-derived phenols, aromatics, and carboxylates compared to the sand fraction of pasture soils. Analytical pyrolysis showed distinct differences in the thermal stability of SOM among the whole soil and their size fractions; it also showed that the loss of SOM generally involved preferential degradation of H-rich compounds. The temperature at which half of the C was pyrolyzed was strongly correlated with mineralizable C, providing good evidence for a link between the biological and thermal stability of SOM.     

Cultivation effects on temporal changes of organic carbon and aggregate stability in desert soils of Hexi Corridor region in China

Sustainable agricultural use of cultivated desert soils has become a concern in Hexi Corridor in Gansu Province of China, because loss of topsoil in dust storms has been recently intensified. We chose four desert sites to investigate the effects of cultivation (cropping) on (i) soil organic C and its size fractions and (ii) soil aggregate stability (as a measure of soil erodibility). These parameters are of vital importance for evaluating the sustainability of agricultural practices.

Total organic C as well as organic C fractions in soil (coarse organic C, 0.1–2 mm; young organic C, 0.05–0.1 mm; stable organic C, <0.05 mm) generally increased with the duration of the cultivation period from 0 (virgin soil, non-cultivated) to more than 30 years (p < 0.05). Compared to total organic C in virgin soils (2.3–3.5 g kg⁻¹ soil), significantly greater values were found after 10 to >20 years of cultivation (6.2–7.1 g kg⁻¹ soil). The increase in organic C in desert soils following prolonged cultivation was mainly the consequence of an increase in the coarse organic C. The increase in total organic C in soil was also dependent on clay content [total organic C = 0.96 + 0.249 clay content (%) + 0.05 cultivation year, R² = 0.48, n = 27, p < 0.001]. This indicates that clay protected soil organic C from mineralization, and also contributed to the increase in soil organic C as time of cultivation increased.

There was a significant positive correlation between aggregate stability and total organic C across all field sites. The water stability of aggregates was low (with water-stable aggregate percentage 4% of dry-sieved aggregates of size 1–5 mm). There was no consistent pattern of increase in the soil aggregate stability with time of cultivation at different locations, suggesting that desert soils might remain prone to wind erosion even after 50 years of cultivation. Alternative management options, such as retaining harvested crop residues on soil surface and excluding or minimizing tillage, may permit sustainable agricultural use of desert soils.     

Effects of cover crops,compost, and manure amendments on soil microbial community structure in tomato production systems

Soil microbial community structure and crop yield was investigated in field tomato production systems that compared black polyethylene mulch to hairy vetch mulch and inorganic N to organic N. The following hypotheses were tested: (1) hairy vetch cover cropping increases crop yield and significantly affects soil microbial community structure when compared to the standard plastic mulch and synthetic fertilizer-based system; (2) within plastic mulch systems, organic amendments will increase crop yield and significantly affect soil microbial community structure when compared to synthetic fertilizer; (3) crop yields and microbial community structure will be similar in the hairy vetch cover cropping and the organic amended plasticulture systems. Treatments consisted of ammonium nitrate (control), hairy vetch cover crop, hairy vetch cover crop and poultry manure compost (10 Mg/ha), three levels of poultry manure compost (5, 10, and 20 Mg/ha), and two levels of poultry manure (2.5 and 5 Mg/ha). Black polyethylene mulch was used in all treatments without hairy vetch. Fatty acid analysis was used to characterize the total soil microbial community structure, while two substrate utilization assays were used to investigate the community structure of culturable bacteria and fungi. Crop yield was not significantly increased by hairy vetch cover cropping when compared to black polyethylene mulch, although microbial community structure was significantly affected by cover cropping. Under black polyethylene mulch, crop yields were significantly increased by the highest levels of compost and manure when compared to inorganic fertilizer, but there was no detectable effect on soil microbial community structure. When cover cropping was compared to organic amended plasticulture systems, crop yields were similar one year but dissimilar the next. However, hairy vetch cover cropping and organic amendments under black plastic mulch produced significantly different soil microbial community structure.     

Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil?

Re-vegetation of eroded soil restores organic carbon concentrations and improves the physical stability of the soil, which may then extend the range of microhabitats and influence soil microbial activity and functional stability through its effects on soil bacterial community structure. The objectives of this study were (i) to evaluate the restorative effect of re-vegetation on soil physical stability, microbial activity and bacterial community structure; (ii) to examine the effects of soil physical microhabitats on bacterial community structure and diversity and on soil microbial functional stability. Soil samples were collected from an 18-year-old eroded bare soil restored with either Cinnamomum camphora (“Eroded Cc”) or Lespedeza bicolour (“Eroded Lb”). An uneroded soil planted with Pinus massoniana (“Uneroded Pm”) and an eroded bare soil served as references. The effect of microhabitats was assessed by physical destruction with a wet shaking treatment. Soil bacterial community structure and diversity were measured using a terminal restriction fragment length polymorphism (T-RFLP) approach, while soil microbiological stability (resistance and resilience) was determined by measuring short-term (28 days) decomposition rate of added barley (Hordeum vulgare) powder following copper and heat perturbations. The results demonstrated that re-vegetation treatment affected the recovery of physical and biological stability, microbial decomposition and the bacterial community structure. Although the restored soils overshot the Uneroded Pm sample in physical stability, they had lower microbial decomposition and less resilience to copper and heat perturbations than the Uneroded Pm samples. Soil physical destruction by shaking had the same effect on soil physical stability, but different effects on soil microbial functional stability. There were significant effects of vegetation treatment and perturbation type, and interactive effects among vegetation treatment, shaking and perturbation type on bacterial community structure. The destruction of aggregate structure increased resilience of the Eroded Lb sample and also altered its bacterial community structure. Both copper and heat perturbations resulted in significantly different community structure from the unperturbed controls, with a larger effect of copper than heat perturbation. Bacterial diversity (Shannon index) increased following the perturbations, with a more profound effect in the Uneroded Pm sample than in the restored soils. The interactive effects of vegetation treatment and shaking on microbial community and stability suggest that soil aggregation may contribute to the generation of bacterial community structure and mediation of biological stability via the protection afforded by soil organic carbon. Differential effects of re-vegetation treatment suggest that the long-term effects are mediated through changes in the quality and quantity of C inputs to soil.     

长期垄作免耕对不同大小土壤团聚体中几种氮素形态分布的影响

在西南大学国家紫色土肥力定位监测点,研究了长期（18年）垄作免耕和常规轮作两种耕作方式下,不同大小土壤团聚体中几种形态氮素含量及脲酶活性分布模式。结果表明,两种轮作方式下全氮、微生物体氮、NO3--N含量及脲酶活性在水稳性土壤团聚体中具有相似的分布模式。全氮和微生物体氮含量主要分布在 0.25 mm粒级的大团聚体中,其次是0.25~0.053 mm粒级的微团聚体中,粉砂与粘粒组分(0.053 mm)中分布最少;2.0~0.25 mm粒级团聚体中脲酶活性最高,0.25~0.053 mm的微团聚体中脲酶活性最低;NH4+-N和NO3-N在2.0 mm粒级团聚体中的含量均比其它粒级高。垄作免耕下各级团聚体中全氮、微生物体氮、NO3--N含量及脲酶活性均高于常规轮作。其中,2.0~0.25 mm粒级团聚体中的全氮含量高23.1%;2.0 mm粒级团聚体中NO3--N含量高26.7％。表明垄作免耕下各团聚体中全氮、微生物氮含量及脲酶活性显著高于常规轮作,但氮素含量及脲酶活性在不同粒径大小的土壤水稳性团聚体中的分布模式决定于土壤结构体本身,耕作方式的影响不显著。     

Effects of past and current crop management on soil microbial biomass and activity

Because soil biota is influenced by a number of factors, including land use and management techniques, changing management practices could have significant effects on the soil microbial properties and processes. An experiment was conducted to investigate differences in soil microbiological properties caused by long- and short-term management practices. Intact monolith lysimeters (0.2 m² surface area) were taken from two sites of the same soil type that had been under long-term organic or conventional crop management and were then subjected to the same 2.5-year crop rotation [winter barley (Hordeum vulgare L.), maize (Zea mais L.), lupin (Lupinus angustifolius L.), and rape (Brassica napus L. ssp. oleifera)] and two fertilizer regimes (following common organic and conventional practices). Soil samples were taken after crop harvest and analyzed for microbial biomass C and N, microbial activity (fluorescein diacetate hydrolysis, arginine deaminase activity, and dehydrogenase activity), and total C and N. The incorporation of the green manure stimulated growth and activity of the microbial communities in soils of both management histories. Soil microbial properties did not show any differences between organically and conventionally fertilized soils, indicating that crop rotation and plant type had a larger influence on the microbial biomass and enzyme activities than fertilization. Initial differences in microbial biomass declined, while the effects of farm management history were still evident in enzyme activities and total C and N. Links between enzyme activities and microbial biomass C varied depending on treatment, indicating differences in microbial community composition.     

Organic matter accumulation and fertilizer-induced acidification interact to affect soil microbial and enzyme activity on a long-term sugarcane management experiment

The effects of crop residue management and fertilizer applications on the size and activity of the microbial community and the activity of exocellular enzymes involved in mineralization of C, N, P and S were examined on a long-term (60 years) field trial under sugarcane situated at Mount Edgecombe, South Africa. Treatments at the site included pre-harvest burning with harvest residues removed (B), burning with harvest residues (unburnt tops) left on the soil surface (B_t) and green cane harvesting with retention of a trash blanket (T). Plots were either fertilized annually with N, P and K or unfertilized. The size and activity of the microbial community and the activity of soil enzymes assayed increased with increasing inputs of crop residues (B < B_t < T) and this effect was evident to a depth of 30 cm. The metabolic quotient was decreased by inputs of both crop residues and fertilizers. Annual fertilizer additions did not affect basal respiration, increased fluorescein diacetate (FDA) hydrolysis rate and acid phosphatase, invertase and protease activities and decreased arginine ammonification rate and dehydrogenase, alkaline phosphatase, arylsulphatase and histidase activities. These effects were attributed to an interaction between the positive effect of fertilizer in increasing the size of the microbial biomass and the negative effect of fertilizer-N-induced soil acidification on microbial activity and on the activity of exocellular enzymes. Such results demonstrate the importance of using a range of measurements of microbial and enzyme activity when determining the effects of management on soil microbial and biochemical properties.