Chronic nitrogen deposition and the composition of active arbuscular mycorrhizal fungi

A growing body of evidence indicates that atmospheric nitrogen (N) deposition can alter the composition and function of arbuscular mycorrhizal fungi (AMF) associated with plant roots. We studied the community of AMF actively transcribing ribosomal genes in the forest floor of northern hardwood forests dominated by sugar maple (Acer saccharum Marsh.) that have been exposed to experimental N deposition since 1994 (30 kg NO₃⁻-N ha⁻¹ year⁻¹). Our objective was to evaluate whether previously observed declines in AM root infection and mycelial production resulted in a compositional shift in the AM fungi actively providing resources to plant symbionts under chronic N deposition. To accomplish this task, we cloned and sequenced the LSU of reverse-transcribed AM fungal rRNA extracted from the forest floor under ambient and experimental N deposition treatments. We found that experimental N deposition did not alter the active community of AMF or AMF diversity, but we did observe a significant decrease in rare taxa under chronic N deposition. Our results indicate that chronic N deposition, at levels expected by the end of this century, can exert a moderate influence on the composition and abundance of AMF associated with plant roots in a wide-spread forest ecosystem in the northeastern North America.     

Microbial communities in forest floors under four tree species in coastal British Columbia

We compare forest floor microbial communities in pure plots of four tree species (Thuja plicata, Tsuga heterophylla, Pseudotsuga menziesii, and Picea sitchensis) replicated at three sites on Vancouver Island. Microbial communities were characterised through community level physiological profiles (CLPP), and profiling of phospholipid fatty acids (PLFA).Microbial communities from cedar forest floors had higher potential C utilisation than the other species. The F layer of the forest floor under cedar contained significantly higher bacterial biomass (PLFA) than the F layer under the other three tree species. There were differences in microbial communities among the three sites: Upper Klanawa had the highest bacterial biomass and potential C utilisation; this site also had the highest N availability in the forest floors. Forest floor H layers under hemlock and Douglas-fir contained greater biomass of Gram positive, Gram negative bacteria and actinomycetes than F layers based on PLFA, and H layers under spruce contained greater biomass of Gram negative bacteria than F layers. There were no significant differences in bacterial biomass between forest floor layers under cedar. Fungal biomass displayed opposite trends to bacteria and actinomycetes, being lowest in cedar forest floors, and highest in the F layer and at the site with lowest N availability. There were also differences in community composition among species and sites, with cedar forest floors having a much lower fungal:bacterial ratio than spruce, hemlock and Douglas-fir. The least fertile Sarita Lake site had a much greater fungal:bacterial ratio than the more fertile San Juan and Upper Klanawa sites. Forest floor layer had the greatest effect on microbial community structure and potential function, followed by site, and tree species. The similarity in trends among measures of N availability and microbial communities is further evidence that these techniques provide information on microbial communities that is relevant to N cycling processes in the forest floor.     

Influence of repeated prescribed burning on incorporation of C from cellulose by forest soil fungi as determined by RNA stable isotope probing

Repeated prescribed burning is frequently used as a forest management tool and can influence soil microbial diversity and activity. Soil fungi play key roles in carbon and nutrient cycling processes and soil fungal community structure has been shown to alter with increasing burning frequency. Such changes are accompanied by changes to soil carbon and nitrogen pools, however, we know little regarding how repeated prescribed burning alters functional diversity in soil fungal communities. We amended soil with ¹³C-cellulose and used RNA stable isotope probing to investigate the effect of biennial repeated prescribed burning over a 34-year period on cellulolytic soil fungi. Results indicated that repeated burning altered fungal community structure. Moreover, fungal community structure and diversity in ¹²C and ¹³C fractions from the unburned soil were not significantly different from each other, while those from the biennial burned soils differed from each other. The data indicate that fewer active fungi in the biennially burned soil incorporated ¹³C from the labelled cellulose and that repeated prescribed burning had a significant impact on the diversity of an important functional group of soil fungi (cellulolytic fungi) that are key drivers of forest soil decomposition and carbon cycling processes.     

Effects of tree species and N additions on forest floor microbial communities and extracellular enzyme activities

Forest nitrogen (N) retention and soil carbon (C) storage are influenced by tree species and their associated soil microbial communities. As global change factors alter forest composition, predicting long-term C and N dynamics will require understanding microbial community structure and function at the tree species level. Because atmospheric N deposition is increasing N inputs to forested ecosystems across the globe, including the northeastern US, it is also important to understand how microbial communities respond to added N. While prior studies have examined these topics in mixed-species stands, we focused on the responses of different tree species and their associated microbial communities within a single forest type - a northern hardwood forest in the Catskills Mountains, NY. Based on prior studies, we hypothesized that N additions would stimulate extracellular enzyme activities in relatively labile litters, but suppress oxidative enzyme activities in recalcitrant litters, and tested for independent tree species effects within this context. During the 2007 growing season (May-June), we measured enzyme activities and microbial community composition (using phospholipid fatty acid analysis - PLFA) of the forest floor in single-species plots dominated by sugar maple (Acer saccharum), yellow birch (Betula alleghaniensis), red oak (Quercus rubra), American beech (Fagus grandifolia) and eastern hemlock (Tsuga canadensis), species whose litters range from relatively labile to recalcitrant. Half the plots were fertilized with N by adding NH₄NO₃ (50 kg ha⁻¹ y⁻¹) from 1997 to 2009. Non-metric multidimensional scaling (NMS) and multi-response permutation procedures (MRPP) were used to examine microbial community structure and relationship to enzyme activities.We found that in response to N additions, both microbial community composition and enzyme activities changed; however the strength of the changes were tree species-specific and the direction of these changes was and not readily predictable from prior studies conducted in mixed-species stands. For example, in contrast to other studies, we found that N additions caused a significant overall increase in fungal biomass that was strongest for yellow birch (24% increase) and weakest for sugar maple (1% increase). Contrary to our initial hypotheses and current conceptual models, N additions reduced hydrolytic enzyme activities in hemlock plots and reduced oxidative enzyme activity in birch plots, a species with relatively labile litter. These responses suggest that our understanding of the interactions between microbial community composition, enzyme activity, substrate chemistry, and nutrient availability as influenced by tree species composition is incomplete. NMS ordination showed that patterns in microbial community structure (PLFA) and function (enzyme activity) were more strongly influenced by tree species than by fertilization, and only partially agreed with the structure-function relationships found in other studies. This finding suggests that tree species-specific responses are likely to be important in determining the structure and function of northeastern hardwood forests in the future. Enhanced understanding of microbial responses to added N in single and mixed-species substrates with varying amounts of lignin and phenols may be needed for accurate predictions of future soil C and N dynamics.     

Response of the soil fungal community to multi-factor environmental changes in a temperate forest

Both environmental and climatic changes are known to influence soil microbial biomes in terrestrial ecosystems. However, there are limited data defining the interactive effects of multi-factor environmental disturbances, including N-deposition, precipitation, and air temperature, on soil fungal communities in temperate forests. A 3-year outdoor pot experiment was conducted to examine the temporal shifts of soil fungal communities in a temperate forest following N-addition, precipitation and air temperature changes. The shifts in the structure and composition of soil fungal communities were characterized by denaturing gradient gel electrophoresis and DNA sequencing. N-addition regimen induced significant alterations in the composition of soil fungal communities, and this effect was different at both higher and lower altitudes. The response of the soil fungal community to N-addition was much stronger in precipitation-reduced soils compared to soils experiencing enhanced precipitation. The combined treatment of N-addition and reduced precipitation caused more pronounced changes in the lower altitude versus those in the higher one. Certain fungal species in the subphylum Pezizomycotina and Saccharomycotina distinctively responded to N fertilization and soil water control at both altitudes. Redundancy discrimination analysis showed that changes in environmental factors and soil physicochemical properties explained 43.7% of the total variability in the soil fungal community at this forest ecosystem. Variations in the soil fungal community were significantly related to the altitude, soil temperature, total soil N content (TN) and pH value (P < 0.05). We present evidence for the interactive effects of N-addition, water manipulation and air temperature to reshape soil fungal communities in the temperate forest. Our data could provide new insights into predicting the response of soil micro-ecosystem to climatic changes.     

Microbial community response to nitrogen deposition in northern forest ecosystems

The productivity of temperate forests is often limited by soil N availability, suggesting that elevated atmospheric N deposition could increase ecosystem C storage. However, the magnitude of this increase is dependent on rates of soil organic matter formation as well as rates of plant production. Nonetheless, we have a limited understanding of the potential for atmospheric N deposition to alter microbial activity in soil, and hence rates of soil organic matter formation. Because high levels of inorganic N suppress lignin oxidation by white rot basidiomycetes and generally enhance cellulose hydrolysis, we hypothesized that atmospheric N deposition would alter microbial decomposition in a manner that was consistent with changes in enzyme activity and shift decomposition from fungi to less efficient bacteria. To test our idea, we experimentally manipulated atmospheric N deposition (0, 30 and 80 kg NO₃⁻-N) in three northern temperate forests (black oak/white oak (BOWO), sugar maple/red oak (SMRO), and sugar maple/basswood (SMBW)). After one year, we measured the activity of ligninolytic and cellulolytic soil enzymes, and traced the fate of lignin and cellulose breakdown products (¹³C-vanillin, catechol and cellobiose).In the BOWO ecosystem, the highest level of N deposition tended to reduce phenol oxidase activity (131±13 versus 104±5 μmol h⁻¹ g⁻¹) and peroxidase activity (210±26 versus 190±21 μmol h⁻¹ g⁻¹) and it reduced ¹³C-vanillin and ¹³C-catechol degradation and the incorporation of ¹³C into fungal phospholipids (p<0.05). Conversely, in the SMRO and SMBW ecosystems, N deposition tended to increase phenol oxidase and peroxidase activities and increased vanillin and catechol degradation and the incorporation of isotope into fungal phospholipids (p<0.05). We observed no effect of experimental N deposition on the degradation of ¹³C-cellulose, although cellulase activity showed a small and marginally significant increase (p<0.10). The ecosystem-specific response of microbial activity and soil C cycling to experimental N addition indicates that accurate prediction of soil C storage requires a better understanding of the physiological response of microbial communities to atmospheric N deposition.     

Impact of inorganic nitrogen additions on microbes in biological soil crusts

Many studies have shown that changes in nitrogen (N) availability affect the diversity and composition of soil microbial community in a variety of terrestrial systems, but less is known about the responses of microbes specific to biological soil crusts (BSCs) to increasing N additions. After seven years of field experiment, the bacterial diversity in lichen-dominated crusts decreased linearly with increasing inorganic N additions (ambient N deposition; low N addition, 3.5 g N m⁻² y⁻¹; medium N addition, 7.0 g N m⁻² y⁻¹; high N addition, 14.0 g N m⁻² y⁻¹), whereas the fungal diversity exhibited a distinctive pattern, with the low N-added crust containing a higher diversity than the other crusts. Pyrosequencing data revealed that the bacterial community shifted to more Cyanobacteria with modest N additions (low N and medium N) and to more Actinobacteria and Proteobacteria and much less Cyanobacteria with excess N addition (high N). Our results suggest that soil pH, together with soil organic carbon (C), structures the bacterial communities with N additions. Among the fungal communities, the relative abundance of Ascomycota increased with modest N but decreased with excess N. However, increasing N additions favored Basidiomycota, which may be ascribed to increases in substrate availability with low lignin and high cellulose contents under elevated N conditions. Bacteria/fungi ratios were higher in the N-added samples than in the control, suggesting that the bacterial biomass tends to dominate over that of fungi in lichen-dominated crusts after N additions, which is especially evident in the excess N condition. Because bacteria and fungi are important components and important decomposers in BSCs, the alterations of the bacterial and fungal communities may have implications in the formation and persistence of BSCs and the cycling and storage of C in desert ecosystems.     

Chronic N deposition does not apparently alter the biochemical composition of forest floor and soil organic matter

Future rates of atmospheric N deposition have the potential to slow litter decay and increase the accumulation of soil organic matter by repressing the activity of lignolytic soil microorganisms. We investigated the relationship between soil biochemical characteristics and enzymatic responses in a series of sugar maple (Acer saccharum)-dominated forests that have been subjected to 16 yrs of chronic N deposition (ambient + 3 g NO₃⁻–N m⁻² yr⁻¹), in which litter decay has slowed and soil organic matter has accumulated in sandy spodosols. Cupric-oxide-extractable lignin-derived phenols were quantified to determine the presence, source, and relative oxidation state of lignin-like compounds under ambient and experimental N deposition. Pools of respired C and mineralized N, along with rate constants for these processes, were used to quantify biochemically labile substrate pools during a 16-week laboratory incubation. Extracellular enzymes mediating cellulose and lignin metabolism also were measured under ambient and experimental N deposition, and these values were compared with proxies for the relative oxidation of lignin in forest floor and surface mineral soil. Chronic N deposition had no influence on the pools or rate constants for respired C and mineralized N. Moreover, neither the total amount of extractable lignin (forest floor, P = 0.260; mineral soil, P = 0.479), nor the relative degree of lignin oxidation in the forest floor or mineral soil (forest floor P = 0.680; mineral soil P = 0.934) was influenced by experimental N deposition. Given their biochemical attributes, lignin-derived molecules in forest floor and mineral soil appear to originate from fine roots, rather than leaf litter. Under none of the studied circumstances was the presence or relative oxidation of lignin correlated with the activity of cellulolytic and lignolytic extracellular enzymes. Although chronic atmospheric N deposition has slowed litter decay and increased organic matter in our experiment, it had little effect on biochemical composition of lignin-derived molecules in forest floor and surface mineral soil suggesting organic matter has accumulated by other means. Moreover, the specific dynamics of lignin phenol decay is decoupled from short-term organic matter accumulation under chronic N deposition in this ecosystem.     

Distinctive fungal and bacterial communities are associated with mats formed by ectomycorrhizal fungi

The distinct rhizomorphic mats formed by ectomycorrhizal Piloderma fungi are common features of the organic soil horizons of coniferous forests of the Pacific Northwest. These mats have been found to cover 25-40% of the forest floor in some Douglas-fir stands, and are associated with physical and biochemical properties that distinguish them from the surrounding non-mat soils. In this study, we examined the fungal and bacterial communities associated with Piloderma mat and non-mat soils. Each mat and non-mat area was repeatedly sampled at four times throughout the year. Characterization of the mat activity and community was achieved using a combination of N-acetylglucosaminidase (NAGase) enzyme assays, and molecular analysis of fungal and bacterial communities using T-RFLP profiles, clone libraries, and quantitative PCR. Piloderma mats had consistently greater NAGase activity across all dates, although the magnitude of the difference varied by season. Furthermore, we found distinct fungal and bacterial communities associated with the Piloderma mats, yet the size of the microbial populations differed little between the mat and non-mat soils. Significant temporal variation was seen in the NAGase activity and in the sizes of the fungal and bacterial populations, but the community composition remained stable through time. Our results demonstrate the presence of two distinct microbial communities occupying the forest floor of Douglas-fir stands, whose populations and activities fluctuate seasonally but with little change in composition, which appears to be related to the physiochemical nature of mat and non-mat habitats.     

Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils

Key physicochemical factors associated with microbial community composition and functions in Australian agricultural soils were identified. Soils from seven field sites, with varying long-term agricultural management regimes, were characterised physicochemically, on the basis of their bacterial and fungal community structures (using PCR-DGGE), and by assessing potential catabolic functions (MicroResp?). Soil type, rather than agricultural management practice, was the key determinant of microbial community structure and catabolic function (P<0.05). Following multivariate analysis, soil pH was identified as the key habitat-selective physicochemical soil property associated with variation in biological diversity and profiles of organic substrate utilisation. In particular, the capacity of soils to catabolise different C-substrates was closely correlated (ρ=0.604, P=0.001) to pH. With decreasing pH, the catabolism of common low molecular weight organic compounds (especially cysteine and aspartic acid) declined, however catabolism of two others (lysine and arginine) increased. Shifts in the capacity of soil microbiota to cycle common organic compounds have implications for overall geochemical cycling of C and N in acidifying soils. The genetic structure of the bacterial communities in soil strongly correlated with pH (ρ=0.722; P=0.001) and that of soil fungi with pH and % sand (ρ=0.323; P=0.006). Catabolic function was more closely associated with the structure of the bacterial than fungal communities. This work has shown that soil pH is a primary driver of microbial diversity and function in soil. Agricultural management practices thereby act to selectively shift populations and functions against this background.     

Evidence that plant diversity and site productivity confer stability to forest floor microbial biomass

The ability of soil microbial communities to withstand punctual disturbance or chronic stress is important for the stability of ecosystem processes. Factors controlling microbial community composition or soil resource availability should be regarded as potential determinants of this stability. Here, we explored the effects of three stand types (jack pine, aspen and mixed-wood) and two geologic parent materials (clay and till), on the stability of the microbial biomass in the forest floor. We hypothesised that microbial communities in mixed-wood stands or on the clay soil would show greater resistance to, and resilience from, a dry-wet disturbance, and a higher tolerance to incremental additions of HCl or Cu, than microbial communities in mono-specific stands or on the till soil. We also surveyed the understory vegetation, and measured chemical properties and microbial phospholipid fatty acid profiles in the forest floor, so as to gain insights into the factors regulating microbial stability. Microbial resistance to disturbance was found to be higher in mixed-wood than in mono-specific stands. Microbial communities from mixed-wood stands also showed a high tolerance to HCl and Cu stress over both geologic parent materials, as opposed to those in mono-specific stands that showed a high tolerance to stress on only one type of parent material. Some forest floor properties in mixed-wood stands (e.g. Ca on clay, mineralisable N and C/N ratio on till) were more similar to the more productive aspen, than to jack pine stands. Other properties (understory plant communities, pH, actinomycete and arbuscular mycorrhizae) of mixed-wood stands were transitional between those in aspen and jack pine stands, suggesting that both tree species contribute in structuring the forest floor microbial pool in mixed-wood stands. We put forward that this may provide a more diverse capability to resist disturbance and tolerate stress than in mono-specific stands. We found no effect of stand type on microbial resilience to disturbance, but resilience was higher on clay than on till plots. This could be due to a higher fungal/bacterial ratio on till plots, as slower fungal growth rates may hinder resilience, or to lower carbon and nutrient availability limiting the growth rate of resistant microbial cells. We conclude that plant diversity and site productivity are important drivers of forest floor microbial stability in the southern boreal forest of eastern Canada.     

Forest floor development and biochemical properties in reconstructed boreal forest soils

Following resource extraction by surface mining in the oil sands region of northeastern Alberta, sites are reclaimed by reconstructing soils using a variety of salvaged organic and mineral materials, and planted to native tree species. This study assessed the influence of three distinct stand types (Populus tremuloides Michx., Pinus banksiana Lamb., and Picea glauca (Moench) Voss) on forest floor development (thickness, morphology, total carbon and nitrogen contents), soil organic matter composition, and associated soil microbial communities. Forest floor and top mineral soil (0–5 cm) samples were collected from 32 sites reclaimed 16–33 years ago. Soil organic matter composition was measured using ramped-cross-polarization ¹³C nuclear magnetic resonance, and microbial communities were characterized using phospholipid fatty acid analysis. Morphological characteristics indicated little mesofaunal or fungal activities within the forest floors. Stands dominated by P. tremuloides fostered more rapid forest floor development than the coniferous (P. banksiana and P. glauca) stands, and showed a significant increase in forest floor thickness with time since reclamation. Within the P. tremuloides stands, forest floor development was accompanied by temporal changes in soil organic matter composition that reflected inputs from the canopy. Soil microbial community composition differed among reclamation treatments of the reconstructed soils, specifically as a function of their subsoil mineral textures, when canopy cover was below 30%. Above 30%, significant differences became apparent among stand types. Taken together, our results document how canopy cover and stand type were both important factors for the reestablishment of plant–soil relationships at these sites. Furthermore, achieving a canopy cover of 30% emerged as a critical threshold point during soil reclamation.     

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

Although soil microorganisms play a central role in the soil processes that determine nutrient availability and productivity of forest ecosystems, we are only beginning to understand how microbial communities are shaped by environmental factors and how the structure and function of soil microbial communities in turn influence rates of key soil processes. Here we compare the structure and function of soil microbial communities in seven mature, undisturbed forest types across a range of regional climates in British Columbia and Alberta, and examine the variation in community composition within forest types. We collected the forest floor fermentation (F) and humus (H) layers and upper 10 cm of mineral soil at 3 sites in each of seven forest types (corresponding to seven Biogeoclimatic zones) in both spring and summer. Phospholipid fatty acid analysis was used to investigate the structure of soil microbial communities and total soil microbial biomass; potential activities of extra-cellular enzymes indicated the functional potential of the soil microbial community in each layer at each site.Multivariate analysis indicated that both structure and enzyme activities of soil microbial communities differed among the forest types, and significantly separated along the regional climate gradient, despite high local variation. Soil moisture and organic matter contents were most closely related to microbial community characteristics. Forests in the Ponderosa Pine and Mountain Hemlock zones were distinct from other forests and from each other when comparing potential enzyme activities and had the most extreme moisture and temperature values. Forest floors from the hot and dry Ponderosa Pine forests were associated with enzymes characteristic of water-stress and high concentrations of phenols and other recalcitrant compounds. The wet and cold Mountain Hemlock forests were associated with low enzyme activity.An influence of tree species was apparent at the three sites within the Coastal Western Hemlock zone; high bacterial:fungal biomass ratios were found under western redcedar (Thuja plicata) which also had high pH and base-cation levels, and under Douglas-fir (Pseudotsuga menziesii), which had high N availability. Potential activities enzymes differed among soil layers: potential activities of phenol oxidase and peroxidase were highest in mineral soil, whereas phosphatase, betaglucosidase, NAGase, sulfatase, xylosidase and cellobiohydrolase were highest in the forest floors.     

降水变化和氮沉降对荒漠草原土壤丛枝菌根真菌群落结构的影响

降水变化和氮沉降是影响植物、微生物和土壤环境变化的两个重要方面。尽管丛枝菌根（AM）真菌在陆地生态系统中起着至关重要的作用，但人们对降水变化和氮添加如何交互影响AM真菌群落仍知之甚少。本研究以短花针茅荒漠草原为研究对象，采用裂区设计，主区为自然降雨(CK)、增雨30%(W)和减雨30%(R)三个水分梯度，副区为0(N0)，30(N30)，50(N50)和100(N100) kg?hm-2?a-1 四个氮素梯度共12个处理，通过高通量测序分析了土壤中AM真菌群落的多样性和组成。结果发现，水分处理对土壤AM真菌的Alpha多样性有促进作用，氮素处理抑制了土壤AM真菌的Alpha多样性，水分增加和氮素添加的交互作用促进了AM真菌的Alpha多样性增加，并改变了土壤AM真菌群落组成。水分和氮素刺激了各功能型植物生物量的增加，氮添加使多年生杂草和半灌木、小半灌木生物量显著增加，多年生禾草生物量显著减少。此外，多型孢子菌科的相对丰度与一二年生植物和半灌木、小半灌木生物量呈显著正相关，一二年生植物和半灌木、小半灌木生物量在氮添加和增雨处理下增加。本研究证明了AM真菌群落在短期气候变化下的稳定性。此外，AM真菌在科水平上的丰度与各生活型植物地上生物量的相关性证明了地上和地下生态系统的连通性。     

Nitrogen and water addition regulate soil fungal diversity and co-occurrence networks

Purpose

A field experiment was conducted to assess the role of nitrogen (N) and water addition in shaping soil fungal communities and co-occurrence networks in temperate grassland, northern China.

Materials and methods

We measured soil fungal and plant community compositions, and also soil properties including available N, phosphorus, potassium concentrations, soil pH, and soil moisture. Soil fungal co-occurrence networks were constructed using a random matrix theory–based network inference approach.

Results and discussion

Plant species richness was decreased by N addition but increased by water addition, whereas fungal richness was decreased by N addition. The fungal community composition was significantly changed by both N addition and water addition. Soil fungal α diversity and β diversity were explained by a combination of variations in plant species richness and plant functional composition, and also by changes in soil pH via the soil acidification pathway induced by N and water addition. The fungal co-occurrence networks were more complex and clustered under water addition than that in ambient precipitation.

Conclusions

Our results suggested that plant functional composition, plant species richness, and soil acidification should be incorporated into ecosystem models for predicting soil fungal communities under future climate changes in terrestrial ecosystems.

     

Effects of ecological restoration on microbial activity,microbial functional diversity,and soil organic matter in mixed-oak forests of southern Ohio,USA

As a result of many decades of fire suppression and atmospheric deposition the deciduous forests of eastern North America have changed significantly in stem density, basal area, tree size-frequency distribution, and community structure. Consequently, soil organic matter quality and quantity, nutrient availability, and microbial activity have likely been altered. This study evaluated the effects of four alternative forest ecosystem restoration strategies on soil microbial activity, microbial functional diversity, soil organic C, and soil N status in two mixed-oak (Quercus spp.) forests in southern Ohio, USA. The soils of these forests were sampled during the fourth growing season after application of (1) prescribed fire, (2) thinning of the understory and midstory to pre-settlement characteristics, (3) the combination of fire and thinning, and (4) an untreated control. Prescribed fire, with or without thinning, resulted in increased bacterial but not fungal activity when assessed using Biolog^®. In contrast, assays of acid phosphatase and phenol oxidase activity indicated greater microbial activity in the thinning treatment than in the other three treatments. Functional diversity of both bacteria and fungi was affected by restoration treatment, with the bacterial and fungal assemblages present in the thin + burn sites and the fungal assemblage present in the thinned sites differing significantly from those of the control and burned sites. Treatments did not result in significant differences in soil organic C content among experimental sites; however, the soil C:N ratio was significantly greater in thinned sites than in sites given the other three treatments. Similarly, there were no significant differences in dissolve inorganic N, dissolved organic N, or microbial biomass N among treatments. Bacterial and fungal functional diversity was altered significantly. Based on Biolog^® utilization treatments the bacterial assemblage in the thin-only treatment appeared to be relatively N-limited and the fungal assemblage relatively C-limited, whereas in the thin + burn treatment this was reversed. Although effects of restoration treatments on soil organic matter and overall microbial activity may not persist through the fourth post-treatment year, effects on microbial functional diversity are persistent.     

The microbial communities of aspen and spruce forest floors are resistant to changes in litter inputs and microclimate

Previous studies have shown that forest floors from stands dominated by trembling aspen (ASPEN; Populus tremuloides Michx.) tend to support a greater microbial biomass with a different microbial community structure than forest floors from stands dominated by white spruce (SPRUCE; Picea glauca (Moench) Voss). A reciprocal transfer experiment, in concert with coarse and fine mesh bags that allowed or excluded fine root in-growth, was used to examine how the composition of these forest floor microbial communities respond to changes in belowground inputs from fine roots, aboveground inputs (e.g. from litter and through-fall) and soil microclimatic conditions over 1 year. Neither the microbial biomass nor the microbial community structure (assessed using phospholipid fatty acid analyses and substrate-induced respiration techniques) of forest floors of ASPEN or SPRUCE origin were altered by reciprocal transfer to SPRUCE or ASPEN stands, with or without fine root inputs. Despite the lack of changes in microbial community structure, the stand type during incubation had a strong effect on forest floor moisture content and concentrations of nitrate, while mesh size had a significant effect on forest floor pH and the abundance of mesofauna. Thus, changes in microbial community structure did not co-occur with changes in other characteristics of these forest floors. The resistance of the forest floor microbial communities to change may be a function of the high C contents of these soils. Further treatment effects may have been detected if the study had been extended beyond 1 year. Reciprocal transfer studies using coarse and fine mesh bags allow transferred soils to respond to fluctuations in microclimate, organic inputs and soil biota and, therefore, hold considerable promise for studies examining the influence of disturbances on soil properties.     

Increased N availability in grassland soils modifies their microbial communities and decreases the abundance of arbuscular mycorrhizal fungi

Two complementary studies were performed to examine (1) the effect of 18 years of nitrogen (N) fertilization, and (2) the effects of N fertilization during one growing season on soil microbial community composition and soil resource availability in a grassland ecosystem. N was added at three different rates: 0, 5.44, and 27.2 g N m⁻² y⁻¹. In both studies, Schizachyrium scoparium was the dominant plant species before N treatments were applied. Soil microbial communities from each experiment were characterized using fatty acid methyl ester (FAME) analysis. Discriminant analysis of the FAMEs separated the three N fertilizer treatments in both experiments, indicating shifts in the composition of the microbial communities. In general, plots that received N fertilizer at low or high application rates for 18 years showed increased proportions of bacterial FAMEs and decreased fungal FAMEs. In particular, control plots contained a significantly higher proportion of fungal FAMEs C18:1(cis9) and C18:2(cis9,12) and of the arbuscular mycorrhizal fungal (AMF) FAME, C16:1(cis11), than both of the N addition treatment plots. A significant negative effect of N fertilization on the AMF FAME, C16:1(cis11), was measured in the short-term experiment. Our results indicate that high rates of anthropogenic N deposition can lead to significant changes in the composition of soil microbial communities over short periods and can even disrupt the relationship between AMF and plants.     

Ectomycorrhizal community and extracellular enzyme activity following simulated atmospheric N deposition

Ectomycorrhizal (EM) fungi are abundant in temperate and boreal ecosystems and are understood to be an important means whereby plants can fulfill their nutrition requirements. The extent of the EM fungal involvement in accessing organic sources of N, however, remains unknown. Some EM fungi have been found to produce lignolytic and proteolytic enzymes which are necessary to depolymerize organic substrates, but this ability varies by species. Both EM fungal communities and the activities of lignolytic and proteolytic enzymes may be sensitive to changes in inorganic N availability such as through increased atmospheric deposition. Our objectives were to simulate an ecologically relevant increase in atmospheric N deposition in areas currently receiving very little exogenous N and examine changes in EM community composition, lignin degrading enzyme activity, and soil protein depolymerization. We found a distinct shift in the EM community composition following simulated atmospheric N deposition. Likewise, we found a significant decrease in the activity of lignin degrading enzymes, which could have important implications on ecosystem N and C cycling. Contrary to our hypotheses, proteolysis increased following N addition. The fact that lignolytic and proteolytic enzymes exhibit opposite responses is counterintuitive and suggests much is yet to be learned about how N addition affects global C storage by affecting the decomposition of organic matter. Our data suggest small increases in atmospheric N deposition could produce significant changes in communities of EM fungi and N and C cycles.     

森林土壤氧化亚氮排放对大气氮沉降增加的响应研究进展

森林土壤N2O来源于土壤氮素的氧化还原反应,硝化、反硝化、硝化细菌反硝化以及化学反硝化是其产生的四个关键过程。当前,氮素富集条件下森林土壤N2O排放存在硝化和反硝化主导作用之争,对大气氮沉降增加的响应模式以及微生物驱动机制尚不清楚。综述了森林土壤N2O来源的稳定性同位素拆分,森林土壤总氮转化和N2O排放对增氮的响应规律,增氮对N2O产生菌群落活性和组成的影响,并指出研究的薄弱环节与未来的研究重点。总体而言,森林土壤N2O排放对大气氮沉降增加的响应呈现非线性,包括初期无明显响应、中期缓慢增加和后期急剧增加三个阶段,取决于森林生态系统"氮饱和"程度。施氮会引起森林土壤有效氮由贫氮向富氮的转变,相应地改变了土壤硝化细菌和反硝化细菌群落丰度与组成,进而影响土壤N2O排放。由于森林土壤N2O排放监测、土壤总氮转化和N2O产生菌群落动态研究多为独立进行的,难以阐明微生物功能群与N2O排放之间的耦合关系。未来研究应该有机结合15N-18O标记和分子生物学技术,准确量化森林土壤N2O的来源,揭示森林土壤N2O排放对增氮的非线性响应机理。