Microbial and enzyme properties of apple orchard soil as affected by long-term application of copper fungicide

Copper-based fungicides have been applied in apple orchards for a long time, which has resulted in increasing soil Cu concentration. However, the microbial and enzyme properties of the orchard soils remain poorly understood. This study aimed to evaluate the effect of long-term application of Cu-based fungicides on soil microbial (microbial biomass carbon (C_mic), C mineralization, and specific respiration rate) and enzyme (urease, acid phosphatase, and invertase activities) properties in apple orchards. Soil samples studied were collected from apple orchards 5, 15, 20, 30, and 45 years old, and one adjacent forest soil as for reference. The mean Cu concentrations of orchard soils significantly increased with increasing orchard ages ranging from 21.8 to 141 mg kg⁻¹, and the CaCl₂-extractable soil Cu concentrations varied from 0.00 to 4.26 mg kg⁻¹. The soil mean C_mic values varied from 43.6 to 116 mg kg⁻¹ in the orchard soils, and were lower than the value of the reference soil (144 mg kg⁻¹). The ratio of soil C_mic to total organic C (C_org) increased from 8.10 to 18.3 mg C_mic g⁻¹ C_org with decreasing orchard ages, and was 26.1 mg C_mic g⁻¹ C_org for the reference soil. A significant correlation was observed between total- or CaCl₂-extractable soil Cu and soil C_mic or C_mic/C_org, suggesting that the soil Cu was responsible for the significant reductions in C_mic and C_mic/C_org. The three enzyme activity assays also showed the similar phenomena, and declined with the increasing orchard ages. The mean soil C mineralization rates were elevated from 110 to 150 mg CO₂-C kg⁻¹ soil d⁻¹ compared with the reference soil (80 mg CO₂-C kg⁻¹ soil d⁻¹), and the mean specific respiration rate of the reference soil (0.63 mg CO₂-C mg⁻¹ biomass C d⁻¹) was significantly smaller than the orchard soils from 1.19 to 3.55 mg CO₂-C mg⁻¹ biomass C d⁻¹. The soil C mineralization rate and the specific respiration rate can be well explained by the CaCl₂-extractable soil Cu. Thus, the long-term application of copper-based fungicides has shown adverse effects on soil microbial and enzyme properties.     

Long-term effects of land use and fertiliser treatments on sulphur transformations in soils from the Broadbalk experiment

Sulphur transformations were monitored in a unique set of arable, grassland and woodland soils from the Broadbalk Classical Experiment, which started in 1843. In an open incubation experiment with periodic leaching, 14–35 mg SO₄²⁻-S kg⁻¹ was mineralised in 28 weeks at 25°C, equivalent to 4.4–8.3% soil organic S. Cumulative amounts of S mineralised increased linearly during the 28 weeks, indicating constant rates of mineralisation. The rate of mineralisation was the greatest in the woodland soil (170 μg SO₄-S kg⁻¹ day⁻¹), followed by the grassland (120 μg SO₄-S kg⁻¹ day⁻¹) and the arable soil from the farmyard manure (FYM) plot (110 μg SO₄-S kg⁻¹ day⁻¹). Three soils from arable plots receiving different inorganic fertiliser treatments but no FYM had similar rates of S mineralisation (~70 μg SO₄-S kg⁻¹ day⁻¹). In an incubation experiment with ³⁵SO₄²⁻, addition of glucose greatly enhanced S immobilisation. In 132 days, the woodland and grassland soils immobilised more S than the arable soils, with or without glucose amendment. Immobilisation and mineralisation of S occurred concurrently, and both were stimulated by glucose addition. The results show that S mineralisation and immobilisation were influenced strongly by the type of land-use and long-term organic manuring, whereas annual application of sulphate-containing fertilisers for over 150 years had few effects on short-term S transformations.     

Biological carbon assimilation and dynamics in a flooded rice – Soil system

Information on the input, distribution and fate of photosynthesized carbon (C) in plant–soil systems is essential for understanding their nutrient and C dynamics. Our objectives were to: 1) quantify the input to, and distribution of, photosynthesized C by rice into selected soil C pools by using a C¹⁴ continuous labelling technique and 2) determine the influence of the photosynthesized C input on the decomposition of native soil organic carbon (SOC) under laboratory conditions. The amounts of C¹⁴ in soil organic C (SOC¹⁴) were soil dependent, and ranged from 114.3 to 348.2 mg C kg⁻¹, accounting for 0.73%–1.99% of total SOC after continuous labelling for 80 days. However, the mean SOC¹⁴ concentrations in unplanted soils (31.9–64.6 mg kg⁻¹) were accounted for 21.5% of the rice-planted soils. The amounts of C¹⁴ in the dissolved organic C (DOC¹⁴) and in the microbial biomass C (MBC¹⁴), as percentages of SOC¹⁴, were 2.21%–3.54% and 9.72%–17.97%, respectively. The DOC¹⁴ and MBC¹⁴ were 6.72%–14.64% and 1.70%–7.67% of total DOC and MBC respectively after 80-d of rice growth. At 80-d of labelling, the SOC¹⁴ concentration was positively correlated with the MBC¹⁴ concentration and rice root biomass. Rice growth promotes more photosynthesized (newly-derived) C into soil C pools compared to unplanted soils, reflecting the release of root exudates from rice roots. Laboratory incubation of photosynthesized (plant-derived) C in soil decreased the decomposition of native SOC (i.e. a negative priming effect), in some, but not all cases. If this negative priming effect of the new C on native SOC also occurs in the field in the longer term, paddy soils will probably sequester more C from the atmosphere if more photosynthesized C enters them.     

Measuring rates of gross and net mineralisation of organic phosphorus in soils

The isotopic dilution method developed by Oehl et al. [2001b. Organic phosphorus mineralisation studies using isotopic dilution techniques. Soil Science Society of America Journal 65, 780-787] to measure gross mineralisation of soil organic phosphorus (P) was tested on a range of low-P sorbing soils. This isotopic dilution method relies on accurate prediction of radiolabel behaviour due to soil physicochemical processes. Based on experimental validation of the extrapolation for isotopic dilution due to physicochemical processes using autoclaved soils, a simple power function was used for extrapolation rather than the more complex equation used in the original method. For several soils, however, a potential overestimation of gross mineralisation by 0.1-2.0 mg P kg⁻¹ d⁻¹ was revealed. In addition, the detection limit of P mineralisation ranged between 0.6 and 2.6 mg P kg⁻¹ d⁻¹. The method is likely to be at the detection limit for soils that are high in available P and low in biological activity. The method was modified with respect to the extrapolation and successfully applied to a soil with relatively high microbial P (18 mg P kg⁻¹) and soil respiration rates (29 mg C kg⁻¹ d⁻¹), revealing gross mineralisation rates of organic P of 0.9-1.2 mg P kg⁻¹ d⁻¹. Measurement of uptake of ³²P by the microbial biomass allowed derivation of a net organic P mineralisation rate of 0.5-0.9 mg P kg⁻¹ d⁻¹.     

Urea fertilisation affected soil organic matter dynamics and microbial community structure in pasture soils of Southern Ecuador

In the mountain rainforest region of the South Ecuadorian Andes natural forests have often been converted to pastures by slash-and-burn practice. With advanced pasture age the pasture grasses are increasingly replaced by the tropical bracken leading to the abandonment of the sites. To improve pasture productivity a fertilisation experiment with urea was established. The effects of urea on soil organic matter (SOM) mineralisation and microbial community structure in top soil (0–5 cm depth) of an active and abandoned pasture site have been investigated in laboratory incubation experiments. Either ¹⁴C- or ¹⁵N-labelled urea (74 mg urea-N kg⁻¹ dw soil) was added to track the fate of ¹⁴C into CO₂ or microbial biomass and that of ¹⁵N into the KCl-extractable NH₄-N or NO₃-N or microbial biomass pool. The soil microbial community structure was assessed using phospholipid fatty acid analysis (PLFA). In a second experiment two levels of ¹⁴C-labelled urea (74 and 110 mg urea-N kg⁻¹ dw soil) were added to soil from 5 to 10 cm depth of the respective sites. Urea fertilisation accelerated the mineralisation of SOC directly after addition up to 17% compared to the non-fertilised control after 14 days of incubation. The larger the amount of N potentially available per unit of microbial biomass N the larger was the positive priming effect. Since in average 80% of the urea-C had been mineralised already 1 day after amendment, the priming effect was strong enough to cause a net loss of soil C. Although the structure of the microbial community was significantly different between sites, urea fertilisation induced the same alteration in microbial community composition: towards a relative lower abundance of PLFA marker characteristic of Gram-positive bacteria and a higher one of those typical of Gram-negative bacteria and fungi. This change was positively correlated with the increase in NH₄, NO₃ and DON availability. In addition to the activation of different microbial groups the abolishment of energy limitation of the microbes seemed to be an important mechanism for the enhanced mineralisation of SOM.     

Rewetting and litter addition influence mineralisation and microbial communities in soils from a semi-arid intermittent stream

Nitrogen (N) and carbon (C) mineralisation are triggered by pulses of water availability in arid and semi-arid systems. Intermittent streams and their associated riparian communities are obvious ‘hot spots’ for biogeochemical processes in arid landscapes where water and often C are limiting. Stream landscapes are characterized by highly heterogeneous soils that may respond variably to rewetting. We used a laboratory incubation to quantify how N and C mineralisation in rewetted soils and sediments from an intermittent stream in the semi-arid Pilbara region of north-west Australia varied with saturation level and substrate addition (as ground Eucalyptus litter). Full (100%) saturation was defined as the maximum gravimetric moisture content (%) achieved in free-draining soils and sediments after rewetting, with 50% saturation defined as half this value. We estimated rates and amounts of N mineralised from changes in inorganic N and microbial respiration as CO₂ efflux throughout the incubation. In soils and sediments subject to 50% saturation, >90% of N mineralised accumulated within the first 7 d of incubation, compared to only 48% when soils were fully saturated (100% saturation). Mineralisation rates and microbial respiration were similar in riparian and floodplain soils, and channel sediments. N mineralisation rates in litter-amended soils and sediments (0.73 mg N kg⁻¹ d⁻¹) were only one-third that of unamended samples (3.04 mg N kg⁻¹ d⁻¹), while cumulative microbial respiration was doubled in litter-amended soils, suggesting N was more rapidly immobilized. Landscape position was less important in controlling microbial activity than soil saturation when water-filled pore space (% WFPS) was greater than 40%. Our results suggest that large pulses of water availability resulting in full soil saturation cause a slower release of mineralisation products, compared to small pulse events that stimulate a rapid cycle of C and N mineralisation-immobilization.     

Organic nitrogen stimulates the heterotrophic nitrification rate in an acidic forest soil

Many previous studies have demonstrated that heterotrophic nitrification processes play an important role in the production of NO₃⁻ in acidic soils. However, it is not clear whether a low concentration of nitrogenous organic compounds support heterotrophic nitrification processes in natural soils. In this study, we performed an ¹⁵N tracer experiment with a glycine concentration gradient (20, 40, 80, and 160 mg N kg⁻¹) to investigate the effect of the organic nitrogen concentration on the heterotrophic nitrification rate and its relative contribution to the total nitrification of the studied acidic forest soil. This experiment demonstrated that ¹⁵N–NO₃⁻ accumulated over time with all nitrogen treatments in the presence of acetylene, confirming that heterotrophic nitrification occurred even at a low organic nitrogen concentration (20 mg kg⁻¹) in the studied acidic forest soil. In the presence of acetylene, the ¹⁵N–NO₃⁻ concentration in the 20 and 40 mg kg⁻¹ glycine-N treatments was significantly lower than in the 80 and 160 mg kg⁻¹ glycine-N treatments (p < 0.05), indicating that a high organic nitrogen concentration stimulated the heterotrophic nitrification rate. There was no significant difference in the average contribution of heterotrophic nitrification to total nitrification among the different nitrogen treatments, suggesting that the organic nitrogen concentration did not affect the relative contribution of heterotrophic nitrification to total nitrification in the studied acidic soil. Our results confirmed that a low concentration of organic N (20 mg kg⁻¹) supported heterotrophic nitrification in the studied soil. The organic nitrogen concentration stimulates the heterotrophic nitrification rate, but does not affect the relative contribution of heterotrophic nitrification to total nitrification in the studied acidic soil.     

Soil organic carbon buffers heavy metal contamination on semiarid soils: Effects of different metal threshold levels on soil microbial activity

Traditionally, three threshold levels have been accepted for heavy metal concentrations in agricultural soils, depending on soil pH. The aim of this work was to ascertain how the three threshold values proposed for Cd (3, 6.5, and 12.5 mg kg^?1) and Zn (300, 650, and 1300 mg kg^?1) really affect soil microbial activity. Two soils, a scrubland soil and a forest soil, differing widely in their organic C content, were used in this study. Despite the different soil characteristics, the fractions of Cd and Zn extracted with a solution of diethylenetriaminepentaacetic acid (DTPA) showed little difference between soils. Parameters, such as microbial biomass C (C_mic), soil basal respiration (BR), adenosine triphosphate (ATP) content, dehydrogenase activity (DHA), urease activity (UA), alkaline phosphatase activity (APA), and β-glucosidase (β-GA), were less affected by heavy metals in the forest soil than in the scrubland soil. In general, the simultaneous addition of both metals had a synergistic effect on microbial activity, and this treatment produced a significant decrease of microbial activity of both soils with respect to control. The highest level (L3) of Cd, Zn and Cd + Zn treatments produced significant decrease of microbial and biochemical parameters in both soils.     

Carbon pulses but not phosphorus pulses are related to decreases in microbial biomass during repeated drying and rewetting of soils

Drying and rewetting cycles are known to be important for the turnover of carbon (C) in soil, but less is known about the turnover of phosphorus (P) and its relation to C cycling. In this study the effects of repeated drying-rewetting (DRW) cycles on phosphorus (P) and carbon (C) pulses and microbial biomass were investigated. Soil (Chromic Luvisol) was amended with different C substrates (glucose, cellulose, starch; 2.5 g C kg⁻¹) to manipulate the size and community composition of the microbial biomass, thereby altering P mineralisation and immobilisation and the forms and availability of P. Subsequently, soils were either subjected to three DRW cycles (1 week dry/1 week moist) or incubated at constant water content (70% water filled pore space). Rewetting dry soil always produced an immediate pulse in respiration, between 2 and 10 times the basal rates of the moist incubated controls, but respiration pulses decreased with consecutive DRW cycles. DRW increased total CO₂ production in glucose and starch amended and non-amended soils, but decreased it in cellulose amended soil. Large differences between the soils persisted when respiration was expressed per unit of microbial biomass. In all soils, a large reduction in microbial biomass (C and P) occurred after the first DRW event, and microbial C and P remained lower than in the moist control. Pulses in extractable organic C (EOC) after rewetting were related to changes in microbial C only during the first DRW cycle; EOC concentrations were similar in all soils despite large differences in microbial C and respiration rates. Up to 7 mg kg⁻¹ of resin extractable P (P_resin) was released after rewetting, representing a 35-40% increase in P availability. However, the pulse in P_resin had disappeared after 7 d of moist incubation. Unlike respiration and reductions in microbial P due to DRW, pulses in P_resin increased during subsequent DRW cycles, indicating that the source of the P pulse was probably not the microbial biomass. Microbial community composition as indicated by fatty acid methyl ester (FAME) analysis showed that in amended soils, DRW resulted in a reduction in fungi and an increase in Gram-positive bacteria. In contrast, the microbial community in the non-amended soil was not altered by DRW. The non-selective reduction in the microbial community in the non-amended soil suggests that indigenous microbial communities may be more resilient to DRW. In conclusion, DRW cycles result in C and P pulses and alter the microbial community composition. Carbon pulses but not phosphorus pulses are related to changes in microbial biomass. The transient pulses in available P could be important for P availability in soils under Mediterranean climates.     

Field-applying an inexpensive, 13C-depleted,labile carbon source to study in situ fate and short-term effects on soils

Background

Labile carbon (C_labile) limits soil microbial growth and is critical for soil functions like nitrogen (N) immobilization. Most experiments evaluating C_labile additions use laboratory incubations. We need to field-apply C_labile to fully understand its fate and effects on soils, especially at depth, but high cost and logistical difficulties hinder this approach.

Aims

Here, we evaluated the impact of adding an in situ pulse of an inexpensive and ¹³C-depleted source of C_labile—crude glycerol carbon (C_glyc), a by-product from biodiesel production—to agricultural soils under typical crop rotations in Iowa, USA.

Methods

We broadcast-applied C_glyc at three rates (0, 216, and 866 kg C ha⁻¹) in autumn after soybean harvest, tracked its fate, and measured its impact on soil C and N dynamics to four depths (0–5, 5–15, 15–30, and 30–45 cm). Nineteen days later, we measured C_glyc in microbial biomass carbon (MBC), salt-extractable organic C, and potentially mineralizable C pools. We paired these measurements with nitrate N (NO₃⁻–N) and potential net N mineralization to examine short-term effects on N cycling.

Results

C_glyc was found to at least 45-cm depth with the majority in MBC (18%–23% of total C_glyc added). The δ¹³C values of the other measured C pools were too variable to accurately track the C_labile fate. NO₃⁻–N was decreased by 13%–57% with the 216 and 866 kg C ha⁻¹ rates, respectively, and was strongly related to greater microbial uptake of C_glyc (i.e., immobilization via microbial biomass). Crude glycerol application had minor effects on soil pH—the greatest rate decreased pH 0.18 units compared to the control.

Conclusions

Overall, glycerol is an inexpensive and effective way to measure in situ, C_labile dynamics with soil depth—analogous to how mobile, dissolved organic C might behave in soils—and can be applied to rapidly immobilize NO₃⁻–N.     

Effect of temperature on biochar priming effects and its stability in soils

Recent studies have shown both increased (positive priming) and decreased (negative priming) mineralisation of native soil organic carbon (SOC) with biochar addition. However, there is only limited understanding of biochar priming effects and its C mineralisation in contrasting soils at different temperatures, particularly over a longer period. To address this knowledge gap, two wood biochars (450 and 550 °C; δ¹³C −36.4‰) were incubated in four soils (Inceptisol, Entisol, Oxisol and Vertisol; δ¹³C −17.3 to −28.2‰) at 20, 40 and 60 °C in the laboratory. The proportions of biochar- and soil-derived CO₂–C were quantified using a two-pool C-isotopic model.Both biochars caused mainly positive priming of native SOC (up to +47 mg CO₂–C g⁻¹ SOC) in the Inceptisol and negative priming (up to −22 mg CO₂–C g⁻¹ SOC) in the other soils, which increased with increasing temperature from 20 to 40 °C. In general, positive or no priming occurred during the first few months, which remained positive in the Inceptisol, but shifted to negative priming with time in the other soils. The 550 °C biochar (cf. 450 °C) caused smaller positive priming in the Inceptisol or greater negative priming in the Entisol, Oxisol and Vertisol at 20 and 40 °C. At 60 °C, biochar caused positive priming of native SOC only in the first 6 months in the Inceptisol. Whereas, in the other soils, the native SOC mineralisation was increased (Entisol and Oxisol) and decreased (Vertisol) only after 6 months, relative to the control. At 20 °C, the mean residence time (MRT) of 450 °C and 550 °C biochars in the four soils ranged from 341 to 454 and 732−1061 years, respectively. At 40 and 60 °C, the MRT of both 450 °C biochar (25−134 years) and 550 °C biochar (93−451 years) decreased substantially across the four soils. Our results show that biochar causes positive priming in the clay-poor soil (Inceptisol) and negative priming in the clay-rich soils, particularly with biochar ageing at a higher incubation temperature (e.g. 40 °C) and for a high-temperature (550 °C) biochar. Furthermore, the 550 °C wood biochar has been shown to persist in soil over a century or more even at elevated temperatures (40 or 60 °C).     

Toxicity of imidacloprid to the earthworm Eisenia andrei and collembolan Folsomia candida in three contrasting tropical soils

Purpose

Imidacloprid is a widely used seed dressing insecticide in Brazil. However, the effects of this pesticide on non-target organisms such as soil fauna still present some knowledge gaps in tropical soils. This study aimed to assess the toxicity and risk of imidacloprid to earthworms Eisenia andrei and collembolans Folsomia candida in three contrasting Brazilian tropical soils.

Materials and methods

Acute and chronic toxicity assays were performed in the laboratory with both species in a tropical artificial soil (TAS) and in two natural soils (Oxisol and Entisol), at room temperature of 25 °C. The ecological risk was calculated for each species and soil by using the toxicity exposure ratio (TER) and hazard quotient (HQ) approaches.

Results and discussion

Acute toxicity for collembolans and earthworms was higher in Entisol (LC₅₀?=?4.68 and 0.55 mg kg^?1, respectively) when compared with TAS (LC₅₀?=?10.8 and 9.18 mg kg^?1, respectively) and Oxisol (LC_{50collembolans}?=?25.1 mg kg^?1). Chronic toxicity for collembolans was similar in TAS and Oxisol (EC_{50 TAS}?=?0.80 mg kg^?1; EC_{50 OXISOL}?=?0.83 mg kg^?1), whereas higher toxicity was observed in Entisol (EC₅₀?=?0.09 mg kg^?1). In chronic assays with earthworms, imidacloprid was also more toxic in Entisol (EC₅₀?=?0.21 mg kg^?1) when compared to TAS (EC₅₀?=?1.89 mg kg^?1). TER and HQ values indicated a significant risk of exposure of the species to imidacloprid in all soils tested, and the risk in Entisol was at least six times higher than in Oxisol or TAS.

Conclusions

The toxicity and risk of imidacloprid varied significantly between tropical soils, being the species exposure to this pesticide particularly hazardous in very sandy natural soils such as Entisol.

     

Assessment of gross and net mineralization rates of soil organic phosphorus – A review

The quantification of net soil organic P mineralization rates is hampered by the potentially rapid sorption of released phosphate. Here, isotopic dilution approaches to assess gross and net organic P mineralization rates under steady-state conditions are reviewed, including different analytical and numerical solutions to assess P transformation rates based on incubation experiments with ³²P- or ³³P-labeled soils. Non-isotopic approaches are also commented on. Published isotopic dilution studies show that isotopically exchangeable P during incubation can partly or even predominantly (20–90%) result from biological and biochemical rather than physicochemical processes. The relative contribution of biological and biochemical processes tends to be lower in arable soils than under grassland and forests and is negatively related to the availability of inorganic P and positively to concentrations of soil organic carbon. Typical basal gross organic P mineralization rates range between 0.1 and 2.5 mg P kg⁻¹ d⁻¹, but rates up to 12.6 mg P kg⁻¹ d⁻¹ have been observed in grassland and forest soils. The further partitioning of gross organic P mineralization remains uncertain, but a dominance of microbial immobilization and remineralization is likely under most conditions, at least during the initial weeks of incubation. Over longer time periods, the relative importance of mineralization of non-living soil organic P increases, with the contribution of extracellular hydrolysis remaining to be elucidated. This requires other approaches than enzyme activity assays, since measurements of phosphomonoesterase activity in soil render organic P mineralization rates that are one to two orders of magnitude greater than those determined by isotopic dilution. The numerical modeling approach will enable assessment of soil P transformation rates under non-steady-state conditions, where P fluxes are likely to be greater than under steady-state conditions. Ultimately, an improved understanding of the biological and biochemical processes in soil P dynamics may help to improve P management in agroecosystems.     

Carbon and net nitrogen mineralisation in two forest soils amended with different concentrations of biuret

Biuret is a known contaminant of urea fertilisers that might be useful as a slow release N fertiliser for forestry. We studied carbon (C), net nitrogen (N) mineralisation and soil microbial biomass C and N dynamics in two forest soils (a sandy loam and a silt loam) during a 16-week long incubation following application of biuret (C 23.3%, N 40.8%, O 30.0% and H 4.9%) at concentrations of 0, 2, 10, 100 and 1000 mg kg⁻¹ (oven-dried) soil to assess the potential of biuret as a slow-release N fertiliser. Lower concentrations of biuret specifically increased C mineralisation and soil microbial biomass C in the sandy loam soil, but not in the silt loam soil. A significant decrease of microbial biomass C was found in both soils at week 16 after biuret was applied at higher concentrations. C mineralisation declined with duration of incubation in both soils due to decreased C availability. Biuret at concentrations from 10 to 100 mg kg⁻¹ soil had a significantly positive priming effect on soil organic N mineralisation in both soils. The causes for the priming effects were related to the stimulation of microbial growth and activity at an early stage of the incubation and/or the death of microbes at a later stage, which was biuret-concentration-dependent. The patterns in NH₄⁺-N accumulation differed markedly between the two soils. Net N mineralisation and nitrification were much greater in the sandy loam soil than in the silt loam soil. However, the onset of net nitrification was earlier in the silt loam soil. Biuret might be a potential slow-release N source in the silt loam soil.     

The role of lignin and cellulose in the carbon-cycling of degraded soils under semiarid climate and their relation to microbial biomass

A high level of biological degradation is usually observed in soils under semiarid climate where the low inputs of vegetal debris constraint the development of microbiota. Among vegetal inputs, cellulose and lignin are dominant substrates but their assimilation by the microbial community of semiarid soils is yet not understood. In the present study, ¹³C-labeled cellulose and ¹³C-labeled lignin (75 μg ¹³C g⁻¹ soil) were added to two semiarid soils with different properties and degradation level. Abanilla soil is a bare, highly degraded soil without plant cover growing on it and a total organic C content of 5.0 g kg⁻¹; Santomera soil is covered by plants (20% coverage) based on xerophytic shrubs and has a total organic C content of 12.0 g kg⁻¹. The fate of added carbon was evaluated by analysis of the carbon isotope signature of bulk soil-derived carbon and extractable carbon fractions (water and sodium-pyrophosphate extracts). At long-term (120 days), we observed that the stability of cellulose- and lignin-derived carbon was dependent on their chemical nature. The contribution of lignin-derived carbon to the pool of humic substances was higher than that of cellulose. However, at short-term (30 days), the mineralization of the added substrates was more related to the degradation level of soils (i.e. microbial biomass). Stable isotope probing (SIP) of phospholipid fatty acids (PLFA-SIP) analysis revealed that just a minor part of the microbial community assimilated the carbon derived from cellulose and lignin. Moreover, the relative contribution of each microbial group to the assimilation of lignin-derived carbon was different in each soil.     

Tea plantation destroys soil retention of NO3− and increases N2O emissions in subtropical China

The intensive conversion from woodland to tea plantation in subtropical China might significantly change the potential supply processes and cycling of inorganic Nitrogen (N). However, few studies have been conducted to investigate the internal N transformations involved in the production and consumption of inorganic N and N₂O emissions in subtropical soils under tea plantations. In a ¹⁵N tracing experiment, nine tea fields with different plantation ages (1-y, 5-y and 30-y) and three adjacent woodlands were sampled to investigate changes in soil gross N transformation rates in humid subtropical China. Conversion of woodland to tea plantation significantly altered soil gross N transformation rates. The mineralization rate (M_Norg) was much lower in soils under tea plantation (0.53–0.75 mg N kg⁻¹ d⁻¹) than in soil sampled from woodland (1.71 mg N kg⁻¹ d⁻¹), while the biological inorganic N supply (INS), defined as the sum of organic N mineralized into NH₄⁺ (M_Norg) and heterotrophic nitrification (O_Nrec), was not significantly different between soils under woodland and tea plantation, apart from soil under 30-y tea plantation which had the largest INS. Interestingly, the contribution of O_Nrec to INS increased from 19.6% in soil under woodland to 65.0–82.4% in tea-planted soils, suggesting O_Nrec is the dominant process producing inorganic N in tea-planted soils. Meanwhile, the conversion from woodland to tea plantation destroyed soil NO₃⁻ retention by increasing O_Nrec, autotrophic nitrification (O_NH4) and abiotic release of stored NO₃⁻ while decreasing microbial NO₃⁻ immobilization (I_NO3), resulting in greater NO₃⁻ production in soil. In addition, long-term tea plantation significantly enhanced the potential release of N₂O. Soil C/N was positively correlated with M_Norg and I_NO3, suggesting that an increase in soil C/N from added organic materials (e.g. rice hull) is likely to reduce the increased production of NO₃⁻ in the soils under tea plantation.     

Importance of heterotrophic nitrification and dissimilatory nitrate reduction to ammonium in a cropland soil: Evidences from a 15N tracing study to literature synthesis

Future climate change is predicted to influence soil moisture regime, a key factor regulating soil nitrogen (N) cycling. To elucidate how soil moisture affects gross N transformation in a cultivated black soil, a ¹⁵N tracing study was conducted at 30%, 50% and 70% water-filled pore space (WFPS). While gross mineralization rate of recalcitrant organic N (N_rec) increased from 0.56 to 2.47 mg N kg⁻¹ d⁻¹, the rate of labile organic N mineralization declined from 4.23 to 2.41 mg N kg⁻¹ d⁻¹ with a WFPS increase from 30% to 70%. Similar to total mineralization, no distinct moisture effect was found on total immobilization of ammonium, which primarily entered the N_rec pool. Nitrate (NO₃⁻) was mainly produced via autotrophic nitrification, which was significantly stimulated by increasing WFPS. Unexpectedly, heterotrophic nitrification was observed, with the highest rate of 1.06 mg N kg⁻¹ d⁻¹ at 30% WFPS, contributing 31.8% to total NO₃⁻ production, and decreased with WFPS. Dissimilatory nitrate reduction to ammonium (DNRA) increased from near zero (30% WFPS) to 0.26 mg N kg⁻¹ d⁻¹ (70% WFPS), amounting to 16.7–92.9% of NO₃⁻ consumption. A literature synthetic analysis from global multiple ecosystems showed that the rates of heterotrophic nitrification and DNRA in test soil were comparative to the forest and grassland ecosystems, and that heterotrophic nitrification was positively correlated with precipitation, soil organic carbon (SOC) and C/N, but negatively with pH and bulk density, while DNRA showed positive relationships with precipitation, clay, SOC, C/NO₃⁻ and WFPS. We suggested that low pH and bulk density and high SOC and C/N in test soil might favor heterotrophic nitrification, and that C and NO₃⁻ availability together with anaerobic condition were crucial for DNRA. Overall, our study highlights the role of moisture in regulating gross N turnover and the importance of heterotrophic nitrification for NO₃⁻ production under low moisture and DNRA for NO₃⁻ retention under high moisture in cropland.     

Addition of organic and inorganic P sources to soil – Effects on P pools and microorganisms

Phosphorus deficiency is wide-spread due to the poor solubility of soil P and the rapid formation of poorly available P after P addition. Microbes play a key role in soil P dynamics by P uptake, solubilisation and mineralisation. Therefore a better understanding of the relationship between type of P amendment, microbial activity and changes in soil P pools is important for a better management of soil P. A P deficient soil was amended with two composts (low P or high P), two crop residues (low P or high P), and inorganic P (KH₂PO₄) at low and high P, and incubated for 56 days. Composts were added at 20 g kg⁻¹ resulting in a total P addition of 4.1 mg kg⁻¹ soil with the low P compost and 33.2 mg kg⁻¹ soil with the high P compost. The same amount of P was added with the other amendments (residues and inorganic P). All amendments increased cumulative respiration, but microbial biomass and the abundance of bacteria and fungi (assessed by phospholipid fatty acid analysis) increased significantly only in soils with organic amendments, with greater increases with residues. The concentration of the inorganic P pools NaHCO₃-P_i, NaOH-P_i and HCl-P increased significantly within 5 h after amendment, particularly with high P amendments. Over the following 56 days, labile inorganic P was converted mainly into non-labile inorganic P with inorganic P addition whereas labile and non-labile organic P was formed with organic amendments. It is concluded that organic P sources, particularly those with high P concentration can stimulate the formation of organic P forms in soils which may provide a long-term slow release P source for plants and soil organisms.     

Influence of acetamiprid on soil enzymatic activities and respiration

The effect of a new pesticide, acetamiprid, applied at normal field concentration (0.5 mg kg⁻¹ dried soil) and at high concentration (5 and 50 mg kg⁻¹ dried soil), on soil enzyme activities and soil respiration in upland soil was studied. The results showed that acetamiprid had a strong negative influence on soil respiration and phosphatase activity, and the enzyme activities in soil treated with 5 and 50 mg kg⁻¹ dry soil were significantly (P < 0.05) lower than the CK over the course of incubation. The 7-, 14-, and 35-day EC10 for phosphatase were 11, 15, and 11 mg kg⁻¹ dry soil, respectively. The 21-day EC10 and EC50 for soil respiration was 0.005 and 83 mg kg⁻¹ dry soil. The activity of dehydrogenase was enhanced after acetamiprid application for 2 weeks and the enzyme activities in samples treated with 0.5, 5 and 50 mg kg⁻¹ dry soil was about 2.5-, 1.5- and 2-fold to that of the control on sample day 28. Variance of urease and catalase had no distinct relationship with the application concentration. The activity of proteinase was not significantly affected within the first 2 weeks but inhibited from the fourth week after acetamiprid application and was only 0.45-fold to that of the control on sample day 28. Overall, acetamiprid at normal field dose would not pose a toxicological threat to soil enzymes, but a certain potential threat to soil respiration.     

Microbial characteristics of soils from graves: an investigation at the interface of soil microbiology and forensic science

Very little is known about the microbiology of graves. We have taken the opportunity to investigate this subject by taking advantage of the unusual opportunity afforded by the experimental burial of pigs in a forensic experiment. Selected microbial characteristics of soils from the 0–15 and 15–30 cm depths of the graves of three pigs and of control soils have been determined 430 days after burial. The grave soils contained more total C, microbial biomass C and total N, and showed increased rates of respiration and N mineralisation compared to the control soils. The grave soils also had larger amino acid and NH₄⁺ concentrations, which was consistent with the increases in both net N mineralisation and pH values. Nitrification was not detected in any of the soils and the limited NO₃⁻ supply restricted the rate of denitrification, but the large alkali-soluble S²⁻ concentration of soils from the graves indicated reducing conditions in the graves.