Patterns of morphometric variation in the alpine newt (Mesotriton alpestris) at the southern limit of its distribution: environmental correlates

We applied multivariate analyses to an array of body measures of alpine newt specimens derived from 11 local populations in Greece to describe, analyse and detect patterns and putative causes of within‐population and among‐population morphometric variation. The observed morphometric variation was partitioned into several independently varying aspects of the external phenotype, frequently following variation patterns in different environmental factors. The size and features of the aquatic habitat were found to affect body size, while altitude was found to affect head‐shape variation in both sexes. At the intra‐population level, variation in generalized body size and shape was found to be significantly lower when competitive newt species were present in the habitat, indicating stabilizing selection towards a decrease in inter‐specific competition. No clear discrimination on body size and shape proportions was detected between the two genetic lineages examined, implying ecogenetic or environmentally induced variation rather than phylogeny.     

Allozyme markers suitable for population genetic analysis of Fasciola hepatica

Protein electrophoresis was used to study allozyme variation in Fasciola hepatica collected from three locations in Galicia (NW Spain), an area where fascioliasis is endemic. Eleven of 16 loci showed variation in at least one population and 7 loci were polymorphic in all populations studied. Five of these markers showed expected heterozygosities ranging from 0.137 to 0.569. The Nei's unbiased genetic diversity within populations ranged from 0.146 to 0.168. Genotypic frequencies were consistent with panmixia in 25 of 28 cases. Only 2 loci showed a significant deficit of heterozygotes. Genetic distances between populations were small (D(a)=0.003-0.010). These results suggest high levels of genetic variability and low population structure. This study shows that several of the markers developed are useful for study the population genetic structure of the parasite, which is essential to investigate the evolution of drug resistance that has recently emerged in populations of the study area.     

The evolution and maintenance of polymorphism in the major histocompatibility complex

Lambs with the G2 allele at the ovine major histocompatibility complex (mhc) class II locus DRB1 has previously been shown to have lower faecal nematode egg counts than lambs with the I allele at this locus. This association has been confirmed in separate cohorts from the same farm. Other alleles within the mhc have also shown associations with nematode resistance in other breeds of sheep. Therefore, variation in the mhc is responsible for part of the observed genetic variation in resistance to nematode infection. In addition to the specific effect of particular alleles, heterozygotes are also more resistant than homozygotes. This heterozygote advantage is capable of maintaining the high levels of polymorphism observed within the mhc.     

Genetic relationships between sheep, cattle and human Echinococcus infection in Tunisia

Allozyme variation at seven polymorphic loci (GPI, EST, MDH, MPI, DIA, PEP, PGM) was studied to examine genetic variation within and between sheep, cattle and human populations of Echinococcus granulosus in Tunisia. A high degree of genetic similarity was shown between the cysts of the three host origins. Nevertheless, whereas, the ovine and human samples were highly similar, the cattle samples were slightly different genetically. We conclude that humans are mostly infected by parasites originating from sheep liver. The intense deficiency in heterozygotes was partly artefactual (Wahlund effect) and partly due to self-fertilisation.     

Balancing selection in Polish Arabian horses

Polish Arabian horses are a good example of a small population derived from a finite number of founders. Pedigree analysis showed significant reduction in the genetic diversity of the population. However, taking into account some circumstances suggesting the presence of balancing selection favouring heterozygotes in Polish breeding, it seems that this referred to pedigree uniformity rather than to a real decrease in genetic variability. The aim of the current study was to verify the hypothesis that balancing selection affects the population. The mare selection process was examined in detail regarding the polymorphism of 10 protein markers. The findings confirmed the tendency to favour the more heterozygous mares with regard to average heterozygosity in total and in relation to particular loci, studs, fathers and inbreeding ranges. The results were discussed in consideration of selection criteria, inbreeding level of Polish Arabs and heterozygosity in other populations.     

Egg white polymorphisms and economic characters in the domestic fowl

The possible association between genes at 4 egg white loci, Ov, II, III, and Tf and 4 production characters were studied in 3 closed populations consisting of 2 flocks of White Leghorns, each of about 1000 hens, and a Light Sussex flock of 380 hens. The characters studied were: body weight at 5 different ages, egg weight at 3 different ages, age at sexual maturity and egg number at 2 ages. Only the last two characters were studied in the Light Sussex population. Three egg white loci had statistically significant effects on production traits. With body weight and egg weight, the Ov locus had an additive effect, the Ov^A allele being superior. The influence on body weight was significant only on adults, i.e., post‐sexual maturity weights. This was shown to be partly attributable to differences in age at maturity. Locus II was significantly overdominant with respect to egg number in 2 populations while the Tf locus heterozygotes were significantly inferior to the Tf^b/Tf^b homozygotes in the Light Sussex flock. In addition to these direct effects, complex interactions involving these loci were also present on egg number. The additive genetic variance controlled by these loci was also determined. The proportion of the variance attributable to these loci (as a fraction of the additive genetic variance of the trait) was not large enough for any single trait to be of practical importance in selection.     

Sex‐specific participation in inter‐group conflicts within a multilevel society: the first evidence at the individual level

Inter‐group conflicts are common among many group‐living animals and involve potentially complex motivations and interactions. Mammals living in multilevel societies offer a good opportunity to study inter‐group conflicts. This study is the first to explore the function of sex‐specific participation during inter‐group conflicts within a multilevel society at the individual level. The Sichuan snub‐nosed monkey (Rhinopithecus roxellana) is an endangered seasonal breeding species living in a multilevel society. From Sep 2007 to May 2008 we recorded 290 inter‐group conflicts of a free‐ranging provisioned band of R. roxellana in the Qinling Mountains of China to investigate the function of individual aggression during inter‐group encounters. Our findings show that adult males were the main participants in inter‐group conflicts, while females took part in them only occasionally. The male participation rate during the mating season, when adult females were estrous, was significantly higher than that during the non‐mating season. Furthermore, males directed their aggression to other males, and directed more intense aggression towards bachelor males than towards other resident males. For both sexes, the participation rate as initiators was higher in the winter than that in the spring; and there was a significant positive correlation between group size and the participation rate as initiators. Our results suggest that inter‐group aggression in Sichuan snub‐nosed monkeys is linked to both mate defense and resource defense.     

不同品种马ELA-DQA* exon2的多态性分析

通过PCR—SSCP技术检测了7个品种300匹马ELA—DQA＊^exon2的多态性。用12％非变性聚丙烯酰胺凝胶电泳将已变性的PCR扩增产物分离，银染法显色。结果300匹马中共出现27种基因型：10种纯合子和17种杂合子；7个品种马的He和PIC值均表现为高度多态；等位基因序列分析得到10个等位基因间的Kimura双参数遗传距离为0．015～O．147，符合（dN：〉dS）的正选择检验。因此表明马的ELA—DQA＊^exon2多态性丰富。     

Use of a microsatellite-based pedigree in estimation of heritabilities for economic traits in Australian blue mussel, Mytilus galloprovincialis

This study aimed to estimate the heritabilities of three economically important traits (total weight, shell shape and meat yield) in Australian blue mussels. The estimates were derived using a pedigree reconstructed from a suite of both published and newly developed microsatellite markers. A total of 135 microsatellite loci were tested, of which 10 loci produced consistent PCR amplification and reliable results across all samples (74 full-sibling families including 74 pairs of parents and 2536 offspring). Lack of polymorphism at the non-repetitive region of the adhesive protein gene confirmed that the broodstock were derived from a single species. A total of 1538 progenies (62.5%) could be assigned to single parent pairs, and the remainder were assigned to two families or more, so were discarded from further analysis. Heritabilities for total weight, shell shape and meat yield were low (0.051 ± 0.027, 0.085 ± 0.038 and 0.049 ± 0.028, respectively) but reflected large environmental variation rather than limited genetic variation, suggesting a family-based breeding programme could improve these traits. The genetic correlation between weight and meat yield, expressed as percentage of total mussel which was not shell, was negative, while the genetic correlation between meat yield and shell shape was weakly positive.     

Genetic diversity of Indian native cattle breeds as analysed with 20 microsatellite loci

The aim of the present study was to assess the genetic variation and establish the relationship amongst the three Indian zebu cattle breeds using 20 bovine‐specific microsatellite markers. A total of 136 unrelated DNA samples from Sahiwal (SC), Hariana (HC) and Deoni (DC) breeds of cattle were genotyped to estimate within and between breed genetic diversity indices. The estimated mean allelic diversity was 5.2, 6.5 and 5.9 in SC, HC and DC, respectively, with a total of 167 alleles. The average observed and expected heterozygosity for the population varied from 0.42 (SC) to 0.59 (DC), and from 0.61 (SC) to 0.70 (DC), respectively. Low values of genetic variability estimates were observed in SC when compared with DC and HC, indicating some loss of variability because of its relatively small population size. From global F‐statistics a significant deficit of heterozygotes of 24.2% (p < 0.05) was observed for each one of the analysed breeds whereas the total population had a 32.8% (p < 0.05) deficit of heterozygotes. The F_ST estimates demonstrated that approximately 88.7% of the total genetic variation was because of the genetic differentiation within each breed. Pair‐wise breed differentiation, Nei's standard and D_A genetic distance estimates revealed relatively close genetic similarity between HC and DC in comparison with SC. In the UPGMA‐based phylogenetic tree constructed from the genetic distances, HC and DC were grouped together in one cluster and SC in the other. The estimated time of divergence suggested a separation time of approximately 776 years between DC and HC, and a comparatively longer period (1296 years) between DC and SC.     

Genetic population structure of red snapper (Lutjanus malabaricus) and orange‐spotted grouper (Epinephelus coiodes) in Brunei and Sabah

The genetic population structure of red snapper Lutjanus malabaricus and orange‐spotted grouper Epinephelus coiodes in Brunei and Sabah was investigated using allozyme electrophoresis. Samples were collected from three sites in Brunei for E. coiodes and from three sites in Brunei and Sabah for L. malabaricus. A total of 22 loci and 16 loci were scored, respectively. The index of fixation (F_ST) for the E. coiodes population was 0.176 but, in general, it lacked within‐population structuring. The F_ST was particularly high between Brunei Bay/Jerudong and Brunei Bay/ Kuala Belait, suggesting genetic subdivision on a small spatial scale. Isolation of Brunei Bay from the South China Sea may constrain the movement of adult fishes and larval dispersal, thereby reducing homogeneity among subpopulations. All variable loci for E. coiodes were in Hardy‐Weinberg equilibrium except for MDH* and GTDHP* (P < 0.01), in which two subpopulations showed an excess of heterozygotes (P < 0.01). The study on the L. malabaricus population showed a heterozygote deficit of approximately 60% in variable loci (F_ST genetic variation within population = 0.45; P < 0.05); however, the mean observed heterozygosity for the population far exceeded L. malabaricus populations in Australia and Indonesia. A F_ST value of 0.076 revealed moderate genetic differentiation among subpopulations of L. malabaricus. The genotypes were likely to be drawn from the same distribution in Jerudong and Kuala Belait. This study infers that sustainable management of snapper and grouper resources in Brunei waters must take into account the presence of a single stock and two stocks, respectively.     

Pharmacokinetics of low‐dose methotrexate in healthy beagle dogs

Methotrexate may be an alternative to ciclosporin in the treatment of canine atopic dermatitis (cAD) as suggested by recent data. The aim of the study was to investigate both the tolerance and the pharmacokinetic behavior of methotrexate (MTX) in plasma, following intravenous (i.v.), subcutaneous (s.c.) or oral (OR) administration over several weeks. Six healthy dogs were given oral MTX once a week, respectively, per dog at 2.5 mg/1 week, 5 mg/4 weeks, 7.5 mg/3 weeks, 10 mg/6 weeks and 12.5 mg/5 weeks. No clinically relevant abnormalities of laboratory parameters were noticed. A high inter‐individual variation of MTX plasma concentration was observed with a suspicion of saturation phenomenon in absorption. To compare with other routes of administration, six healthy beagle dogs followed a crossover design study at 7.5 mg per dog MTX. The absolute bioavailability was 93% for SC injection and 30% for the oral route. The inter‐individual variability was quite low following SC administration compared to oral route. Just as in human, given the substantial variability of oral absorption, clinicians cannot assume consistent oral bioavailability of MTX. Therefore, they may consider switching dogs to the SC route in case of absence of clinical response with a weekly oral dose.     

Identification of halothane gene carriers by use of in vivo 31P nuclear magnetic resonance spectroscopy in pigs.

In vivo muscle 31P nuclear magnetic resonance spectroscopy was performed on 12 homozygous halothane-nonsensitive female pigs and 13 female pigs heterozygous with respect to the halothane gene. Fifteen female pigs of a third line, consisting of heterozygotes and halothane-nonsensitive homozygotes, were also available. Body weight ranged from 12 to 18 kg. Mean decrease in phosphocreatine concentration in the biceps femoris of anesthetized pigs was significantly lower for heterozygous vs homozygous pigs (3.46% vs 5.94%, P less than 0.01) after 40 minutes of halothane exposure (3%; oxygen flow, 3 L/min). Also, a statistically significant difference, with respect to the initial (7.21 vs 7.11, P less than 0.008) and end muscle pH values (7.18 vs 7.06, P less than 0.0002), was observed for homozygous vs heterozygous pigs. By means of canonical discriminant analysis, it was possible to distinguish nonsensitive homozygotes from heterozygotes (P less than 0.0001). When applying this classification method to pigs of the same strain, 2 populations (nonsensitive homozygotes, heterozygotes) emerged, with a proportion of pigs corresponding to the expected value on the basis of breeding records. In contrast to the phenotypic expression of muscular rigidity related to the malignant hyperthermia syndrome, the expression of metabolic variables (phosphocreatine, pH) was shown to be dominant.     

假俭草抗寒性状与低温胁迫响应EST分子标记的关联分析

为深入研究抗寒分子机理以及为分子标记辅助育种奠定基础,以具有代表性的96份种源为材料,利用假俭草(Eremochloa ophiuroides)抗寒品种TifBlair低温诱导后所得的EST及其近缘种高粱NCBI中低温胁迫响应的EST开发分子标记,对假俭草抗寒指标LT₅₀观测值和EST分子标记位点进行关联分析.结果表明:开发的17对引物在假俭草群体共扫描到46个多态遗传位点,其中CINAU114-900,CINAU115-1500和CINAU116-400位点与抗寒指标LT₅₀有显著关联,其表型变异的解释率分别为5.10%, 4.04%和4.59%;其LT₅₀表型效应分别为0.2518℃,-0.3121℃和0.2449℃.CINAU114-900和CINAU116-400位点提高假俭草对低温的敏感性,而CINAU115-1500位点可提高其抗寒性.     

内蒙古典型草原禾本科牧草生态适应综合评价

通过对96份禾本科牧草的引种试验及其在内蒙古典型草原区生态适应性的研究,结果表明,根据供试草种对当地气候(主要是低温和干旱)的适应能力和生产潜力以及可持续利用时间等三项指标衡量其生态适应性。其中耐低温者有无芒雀麦、新麦草和羊草等月份材料。耐干旱者有新麦草、羊草和草地早熟禾等10份材料。5年内持续生产力较高者有无芒雀麦、紫羊茅、诺丹冰草等14份材料。持续利用时间较长者有无芒雀麦、羊单。草地早熟禾等17份材料。综合分析结果表明,供试草种在典型草原区的生态适应度,从高到低分成三个组:①无芒雀麦、雀麦和紫羊茅。②野大麦、老芒麦、诺丹冰草、杂种冰草、新麦草、羊草、草、草地早熟禾与蒙古冰草等。③冰草、中间冰草、长穗偃麦草和碱茅。     

微卫星分子标记分析四川绵羊群体遗传多样性

为探究四川省6个绵羊群体的遗传多样性,实验应用12个微卫星标记计算基因频率、有效等位基因数、杂合度及多态信息含量来评估群体内遗传多样度,通过遗传距离聚类图、群体结构推测图、主成分分析及群体间分子方差分析来评估群体间遗传关系。结果表明:6个绵羊群体在12个微卫星位点的平均有效等位基因数为3.006~3.176,平均多态信息含量变化为0.559~0.612,平均期望遗传杂合度为0.610~0.670;6个绵羊群体间的遗传关系与地理分布情况及育成史实不完全一致,但遗传距离聚类图、群体结构推测图和主成分分析结果均显示,6个绵羊群体中布拖黑绵羊类群与贾洛绵羊类群遗传关系更近;6个绵羊群体间方差组分F统计量结果为0.112 39,处于中度分化水平。     

Egg trait variation in a large hawk‐cuckoo (Hierococcyx sparverioides) host population of Chinese babax (Babax lanceolatus)

Mutual interaction between brood parasites and their hosts is a well‐known model system for studying host–parasite coevolution. Both parties have acted reciprocally, resembling an evolutionary arms race, in which adaptations and counter‐adaptations have evolved as a result of host–parasite dynamics, such as the classical cuckoo–host system. Discrimination among parasite and cuckoo eggs and rejection of foreign eggs is regarded as an important anti‐parasitism strategy. The Chinese babax (Babax lanceolatus) is a large hawk‐cuckoo (Hierococcyx sparverioides) host distributed in southwest China. A previous study shows that the babax is an intermediate egg rejector, and most cuckoo eggs are accepted by the Chinese babax, although a small proportion of hosts reject cuckoo eggs. Interestingly, the large hawk‐cuckoo lays non‐mimetic eggs in contrast to the uniform blue eggs of babaxes. Because egg coloration is a critical cue used by host species in favor of the recognition of parasitic eggs by hosts, we used a spectrometer to quantify egg color variation to understand the differentiation in discrimination ability between the egg rejectors and acceptors. We found that the chroma of intra‐clutch variation of babax eggs was more consistent in egg rejectors than in acceptors. However, no statistical significance was found in inter‐clutch variation between these two types of hosts. Our results suggest that hosts lay eggs with a low level of intra‐clutch variation without the necessity of a high level of inter‐clutch variation simultaneously as predicted by the egg signature hypothesis. This study may further indicate that selection pressures from evolutionarily recent parasites can drive individual‐based differences in an anti‐parasitism strategy.     

Adjusting for heterogeneity of variance for carcass traits affects single and multiple trait selections in genetic evaluation of Japanese Black cattle

Heterogeneity of variance among subclasses of an effect is a potential source of bias in genetic evaluation. Degrees of the heterogeneity of variance among farm‐market‐year‐sex (FMYS) subclasses for carcass weight, beef marbling standard number, rib‐eye area, rib thickness and subcutaneous fat thickness were investigated in Japanese Black cattle. Consequences of adjusting for the heterogeneity on the predicted breeding values (PBVs) or on the genetic indexes derived from the PBVs of the five carcass traits were assessed. A total of 57 461 records were collected between 1997 and 2002 from steers and heifers fattened at farms across Japan. These records were grouped into 1591 FMYS subclasses. Bartlett's test showed that the degree of the heterogeneity of variance among the FMYS subclasses was sizeable in all traits (P < 0.0001). By applying a two‐step adjustment procedure it was possible to reduce the standard deviation, the coefficient of variation and the Gini coefficient of the phenotypic variances by 67.5% to 75.0% in the different traits. The applied adjustment caused a substantial re‐ranking of elite dams in the PBV for each trait as well as in the genetic index. This study provided evidence that the applied adjustment reduces the bias in the PBVs due to heterogeneous variances and increases the accuracy of bull‐dam selection.     

Comparative Genomics Approach to Identify Candidate Genetic Loci for Male Fertility

The article presents multi‐species, genome‐wide, comparative approach to review male fertility‐associated loci to contribute to the development of new genetic markers that could be of interest for functional studies and have the potential to be implemented in farm animal breeding programmes. We reviewed 835 male fertility‐associated candidate loci from seven species and presented them as bovine orthologues where possible. The candidate loci were identified exploiting seven different research approaches: (i) data from animal models: mouse transgenics and knock‐outs (569 genes) and random chemical mutagenesis of mouse genome (31); (ii) animal QTL (69); (iii) genes differentially expressed between fertile and subfertile phenotype in humans and mouse (95); (iv) DNA sequence variations that show specific allele‐phenotype interactions (43 in human and 13 in farm animals); (v) germ line‐specific small non‐coding RNAs (47); (vi) testes expressed genes controlling complex differentiation process of mammalian spermatogenesis (6); and (vii) epigenetically regulated genes (4). According to the number of different research approaches reporting effects of individual genes, we selected 33 most promising candidate genes, which were further in silico analysed for expression levels in testes, genetic variability and top biological functions in functional networks. The aim of this study was to review systematically male fertility‐associated candidate loci using integrated information from different study approaches and species, which will further facilitate development of novel genetic markers for selection towards improved fertility in domestic animals.