Harvest index and evoluation of major food crop cultivars in the tropics

Summary Relative importance of harvest index (I) and total biomass yield (B) to economic yield (Y) was assessed in several food crops at different levels of environmental productivity. Importance of B is generally higher in low than high yielding environments, while that of I is higher in high than low yielding environments. In some crops B is important throughout different yield levels while in others I is important even in low yielding environments.Past efforts by anonymous farmers have consummated a good part of genetic improvement of crop yields through improvement in B. Many venerable land cultivars of grain crops, adapted to unimproved, limited-input cultural conditions, evolved through this process. The same process may not have thoroughly exhausted the yield improvement opportunity through improving I. Success in yield improvement by modern breeding has been limited mainly to high-input cultural conditions characterized by higher soil fertility and irrigation mainly through improvement in I. Varietal improvement possibility for less productive environments is discussed.     

Cisgenesis and genome editing: combining concepts and efforts for a smarter use of genetic resources in crop breeding

Plant genetic resources (PGR) represent valuable sources of genetic variability for crop breeding. The development of novel biotechnologies is necessary for increasing the efficiency of their use in pre‐breeding and breeding work. The genome sequencing of hundreds of genotypes and the mining of allele diversity in major crops and populations of landraces and wild relatives allow the isolation of genes underlying characters of interest and their precise modification or transfer into targeted varieties. The technological developments and applications of new plant breeding techniques (NPBT) that maximize the similarity with gene transfer by crossing (cisgenesis/intragenesis) or the accuracy of biotechnological approaches (genome editing) are reviewed. Their potentialities and current limitations as well as the possible advantages of using them separately or combined for the exploitation of PGR in crop breeding are also discussed. Above‐mentioned NPBT tackle some objections to the application of biotechnologies in agriculture and are under review worldwide to assess the possible exclusion from the current regulation systems for genetically modified plants.     

Utilization of crop heterosis: a review

Heterosis (or hybrid vigor) is a natural phenomenon whereby hybrid offspring of genetically diverse individuals display improved physical and functional characteristics relative to their parents. Heterosis has been increasingly applied in crop production for nearly a century, with the aim of developing more vigorous, higher yielding and better performing cultivars. In this review we present and compare three categories of crop heterosis utilization: intraspecific heterosis, intersubspecific heterosis and wide-hybridization heterosis, with particular focus on polyploid species. Different pollination-control systems used to breed for heterosis are also comparatively analyzed. Finally, we highlight problems involved in heterosis research and crop improvement. We aim to provide insight into best practices for amplifying heterosis potential.     

Barley adaptation and improvement in the Mediterranean basin

To study barley adaptation and improvement in the Mediterranean basin, a collection of 188 entries comprising landraces and old genotypes and current modern varieties from the Mediterranean basin and elsewhere was tested on moisture‐contrasted environments in seven Mediterranean countries, during 2004 and 2005 harvest seasons. The experimental design consisted of an unreplicated trial for all entries, augmented by four repeated checks to which a partial replicate containing a quarter of the entries was added. Best Linear Unbiased Predictions (BLUPs) representing adjusted genotypic means were generated for individual trials using a mixed model. BLUPs were used for genotype by environment interaction analysis using main effect plus genotype by environment interaction (GGE) biplots of yield ranked data and for comparisons of landraces, old and modern genotypes using analysis of variance. Mean yields ranged from near crop failure to 6 t/ha. Local landraces were better adapted to environments yielding below 2 t/ha, thus breeding has mostly benefited environments yielding above 2 t/ha where modern genotypes out yielded landraces and old cultivars by 15%. Current barley selection is leading to specifically adapted genotypes.     

A non-invasive crop ideotype to reduce invasive potential

Summary In plant breeding programs, qualitative and quantitative traits confer market value and, thus, constitute the basis for developing breeding criteria during crop domestication. Some traits such as high male/female fertility are advantageous in the wild and could enable the evolution of cultivated crops into invasive weeds. Other traits, e.g. sterility, are not expected to confer invasiveness. To date there has been very limited involvement in invasion risk assessment by plant breeders. Thus, in this paper we propose that trait-based selection of potential crop species be coupled with species design in the creation of a “non-invasive crop ideotype” as an avenue to reduce invasiveness during domestication. The non-invasive crop ideotype embodies the ideal characteristics for a crop to excel in cultivated environment(s) but minimizes the likelihood it will establish and spread in non-cultivated environments, constituting the underlying foundation for all breeding objectives, choice(s) of breeding methodologies, and propagation techniques for non-invasive crop release. Using ornamental (floriculture) horticultural crops as an example, we identify 10 traits to be used individually or in combination to reduce invasiveness while retaining commercial value: reduced genetic variation in propagules, slowed growth rates, non-flowering, elimination of asexual propagules, lack of pollinator rewards, non-shattering seed, non-fleshy fruits, lack of seed germination, sterility, and programmed death (apotopsis). A non-invasive crop ideotype would constitute the underlying foundation for all breeding objectives, the choice(s) of breeding methodologies, and propagation technique(s). The ideotype should be flexible and should adjust to species- and crop-specific traits to account for the intended use. For example, development of sterile cultivars may have negligible effects in reducing invasiveness if the crops spread vegetatively. A non-invasive crop ideotype may increase the direct participation of plant breeders, who are the professionals directly involved in the collection, development and release of new crops, in reducing the invasive potential of ornamental crops. Future research is required to determine the feasibility of incorporating each trait into various crops, use of classical or molecular techniques for creation of non-invasive crops, trait stability (lack of genotype × environment interaction over years and locations), consumer acceptance, and long-term viability.     

On-farm Conservation Strategy to Ensure Crop Genetic Diversity in Changing Agro-ecosystems in the Republic of Korea

With the recognition of certain limitations of ex situ methods for conservation of plant genetic resources the Convention on Biological Diversity (CBD) at the ‘Earth Summit’ in 1992 highlighted the importance of traditional knowledge of indigenous and local communities that are relevant for the conservation and sustainable use of biological diversity and gave considerable attention to on‐farm and other forms of in situ conservation. Unlike semi‐static nature of ex situ conservation the in situ or on‐farm conservation (OFC) is a dynamic evolutionary process. In developing countries like Republic of Korea, where there is a continuum between the use of traditional and modern cultivars, integration of OFC with already existing gene‐bank activities in the country will be an effective approach for conservation and sustainable use of the country's crop genetic resources. However, very little efforts have been made so far in developing strategies for OFC, therefore, in this paper we describe the importance of OFC and strategies for its development in Republic of Korea. Surveys over the last 20 years have shown that the landraces of major crops have been almost replaced by newly bred varieties in the country. But some vegetatively propagated or minor crop species are still being maintained in the farmers’ fields. We have identified crop landraces, which can be classified into four different categories from the OFC point of view. These are vegetatively propagated landraces, sexually reproduced landraces, landraces with improved varieties and landraces cultivated for the reasons of personal preference. The related issues on OFC including implementation methods from the point of national cooperative system in designated specific condition are also discussed to ensure the genetic diversity in the fast changing agro‐ecosystem of the country.     

Farmers’ participation and breeding for durable disease resistance in the Andean region

In the Andean region, the Preduza project and its partners combined breeding for durable disease resistance using locally adapted cultivars and farmer participatory methods. The approach taken resembles participatory variety selection (PVS). Farmers participated in the selection of advanced materials, rather than finished cultivars. This paper describes this approach and reports experiences with farmers–breeders collaboration. As breeders involved farmers as participants, they learned more about the most important criteria of male and female farmers for preferred cultivars in the marginal environments of Andean cropping systems. This approach encouraged the use of locally adapted cultivars (often landraces), made the breeders less dependent on foreign materials, and has resulted in selection and development of new wheat, barley, common bean, quinoa, potato and maize cultivars. Breeding programmes based on crossing locally adapted cultivars followed by selection by the breeders in the early phases of the breeding programmes and by participatory selection with the farmers in the more advanced stages of the breeding programmes appeared successful. It became clear that breeders must be well acquainted with the farmer preferences such as the requirements for specific agronomic, storage, processing and marketing traits. Over a period of five years the centralized formal breeding approach predominantly based on material produced by the international institutes was replaced by decentralized breeding approaches based largely on local germplasm with extensive farmer participation.     

Variability in Namibian landraces of watermelon (Citrullus lanatus)

An on-station experiment was carried out in northern Namibia to compare local landraces of watermelon to modern varieties. Three groups of local watermelon are distinguished by farmers in Namibia: watermelons for fresh consumption, cooking melons used for porridge, and seed melons for oil pressing. The present study was carried out to estimate agronomic potential of the local landraces and verify whether agronomic characteristics would justify the local groupings. Important agronomic and fruit-quality traits (yield, earliness, fruit weight, fruit number, rind thickness, soluble solids, seed weight, and tolerance to biotic and abiotic stress) were measured in seven landraces (three watermelons, three cooking melons and one seed melon)and compared to three modern cultivars frequently grown in Namibia. The study revealed that well-adapted, productive Citrullus lanatuslandraces are available, and cultivated by local farmers throughout the northern regions of Namibia. Based on a combination of agronomic characteristics these local varieties could be grouped into three distinct types: watermelons, cooking melons, and seed melons, in agreement with farmers classification. Landrace water melons were characterized by smaller, less sweet fruits with larger seed and a thicker rind compared to modern varieties. Yield level was comparable but development was later and fruit number in some cases higher. Cooking water melons were less sweet than local water melon with large fruits comparable in size to modern cultivars. The only included seed watermelon had small fruits with large seeds and low soluble sugars. Yield varied from 118 t/ha for a giant cooking melon, out yielding all other accessions, to only 10t/ha for the seed melon type, but with considerable variation within groups. The earliness of commercial varieties maybe of interest in developing a mixed portfolio of short- and long-cycle landraces, whereas plant vigour, resistance and seed characters in some of the Namibian landraces may be important traits for breeding for both local purposes and for commercial varieties. This revised version was published online in July 2006 with corrections to the Cover Date.     

Interspecific and intergeneric hybridization and chromosomal engineering of Brassicaceae crops

In Brassicaceae crop breeding programs, wild relatives have been evaluated as genetic resources to develop new cultivars with biotic and abiotic stress resistance. This has become necessary because of the diversification of ecotypes of diseases and pests, changing food preferences, advances in production technology, the use of new approaches such as in vitro breeding programs, and the need for economical production of F₁ seed. To produce potential new cultivars, interspecific and intergeneric hybridizations have been performed between cultivated species and between cultivated species and their wild relatives. Furthermore, interspecific and intergeneric hybrids have been successfully produced using embryo rescue techniques. In this paper, we review the interspecific and intergeneric incompatibilities between Brassicaceae crops and their wild relatives, and the production, characterization, and improvement of synthetic amphidiploid lines, alien gene introgression lines, alloplasmic lines, monosomic alien chromosome addition lines, and monosomic alien chromosome substitution lines. The goal is to provide useful materials to support practical breeding strategies and to study the genetic effects of individual chromosomes on plant traits, the number of genes that control a trait, their linkage relationships, and genetic improvement in Brassicaceae crops.     

Impact of improved vegetable cultivars in overcoming food insecurity

Breeding is probably as old as agriculture itself. Early vegetable breeders developed landrace cultivars by selection of favorable variations in horticultural traits, yield and resistance to diseases and other problems. Later new breeding methods were developed, including hybridization techniques, culminating with the use of recently developed molecular tools, all leading to our modern improved vegetable cultivars. Great emphasis on protection of cultivars by seed companies, including development of F₁ hybrids, plant cultivar protection and patenting have been done. There were 392 vegetable crops cultivated worldwide but only slightly over one half of the total number of them have attracted commercial breeding attention. In recent times, there have been challenges and new trends in the breeding domain. These include an unrelenting movement away from well supported public breeding institutions to a breeding world dominated by private entities, and an increase in size of the companies in the private sector, with emphasis on the major vegetable crops. Almost half of the world vegetable farmers are poor and cannot afford to buy hybrid seed every growing season. Their economics and logistics make them difficult to buy expensive improved or hybrid cultivars since the lack of capital by subsistence farmers denies them the opportunity to invest in vegetable production inputs. If credit facilities and other input facilities are offered, improved or hybrid cultivars can have also a great impact on subsistence vegetable farmers overcoming their poverty and food insecurity. In last 50 years vegetable genetic resources are being lost, on a global scale at the rate of 1–2% per year. The multinational seed companies concentration in huge corporations have merged or canceled some vegetable breeding programs to reduce costs. Then there will be fewer vegetable breeders in the future and the growers will be dependent on a narrower genetic background, that could contribute in a near future, for food insecurity. Smaller seed companies, which are usually specialize in few vegetable crops, must be supported, possibly through autonomous affiliation with the larger companies. There is a need of investment in research breeding and cultivar development in traditionally open-pollinated cultivars and in the minor and so-called “forgotten” vegetables. More investments in this area will mean cheaper cultivars for growers to choose from and more preservation of vegetable biodiversity. In recent years, private plant breeding programs have increased in size and number. Financial investment also increased, as well as interest in intellectual property protection. Protective measures, especially patenting, must be moderated to eliminate coverage so broad that it stifles innovation. The intellectual property protection laws for plants must be made less restrictive to encourage research and free flow of materials and information. Public sector breeding must remains vigorous, especially in areas where the private sector does not function. This will often require benevolent public/private partnerships as well as government support. Intellectual property rights laws for plants must be made less restrictive to encourage freer flow of materials. Active and positive connections between the private and public breeding sectors and large-scale gene banks are required to avoid a possible conflict involving breeders’ rights, gene preservation and erosion. Improved and hybrid vegetable cultivars are, and will continue to be, the most effective, environmentally safe, and sustainable way to ensure global food security in the future.     

Genetic variation in South Korean natural populations of wild soybean (Glycine soja)

Summary Wild relatives are valuable genetic resources for crop improvement. Evaluating genetic variation in these species is not only important for their use in breeding programs, but will also provide information about evolution of crops. Seeds representing six natural populations were used to study the level of variation in the South Korean wild soybean. Electrophoretic assays of the seeds on horizontal slab gels were conducted to determine the genotypes of each natural plant at 35 loci in 17 isozymes and one protein. The results indicated a surprisingly high variation. The number of alleles at each locus was as high as four. Seventy two of the 94 reported alleles for the 35 loci were present in these populations. The average number of alleles per locus, 99% polymorphism and the expected heterozygosity in the total population were 2.1, 77.1% and 0.215, respectively. This amount of variation was not only higher than that reported for 857 soybean cultivars and wild soybean populations from other geographic regions, but also higher than the average for 123 self-fertilized plant species and 473 plant species of all mating systems. The high variation in the South Korean wild soybean as well as cultivated soybean indicated in this and other population genetic studies prompts us to propose that South Korea is one of the major soybean gene centers.     

Plant breeding and diversity: A troubled relationship?

Plant breeding collects, induces and rearranges genetic diversity followed by selection. Breeding may contribute to diversity in farmers’ fields or significantly reduce it. History has numerous examples of both. The diversity of many crops have gone through domestication, dispersal and modernization bottlenecks. Between these major decreasing processes, diversity has picked up through different evolutionary processes, and plant breeding affected by policies. Major negative effects of plant breeding on diversity have been recorded following the modernization bottleneck, but alternative breeding strategies have come up as well, both in the formal system and in the interphase between formal and farmers’ seed systems. Multiline breeding and participatory plant breeding are introduced as examples to also analyse effects of current developments in technology and policy. This paper intends to shed some light on the questions: how will current developments in technology and policy affect crop genetic diversity? Are we heading for a new bottleneck—either a molecular or a policy bottleneck, or a combination of both? Or could the future become more diverse? We look at the relationship between breeding, policies, and crop genetic diversity in farming systems with a birds-eye view. Notably because of current policy trends we warn for a new diversity bottleneck.     

Utilization of genetic resources for the introduction and adaptation of exotic vegetable crops: The case of pepino (Solanum muricatum)

Summary Pepino (Solanum muricatum), a vegetatively propagated plant from the Andean region used for its edible fruits, has been identified as a potential crop for greenhouse cultivation in Mediterranean regions. However, attempts for introducing it have been unsuccessful, either because of the low yield, poor fruit quality, or both. Screening of germplasm under Mediterranean conditions showed that sources of variation for high yield existed in the cultivated genepool and that wild species S. caripense and S. tabanoense could contribute to a considerable improvement of soluble solids content (SSC) of pepino. Progenies obtained after crossing genetically distant (AFLP-based) parental clones were heterotic for yield, and allowed the selection of clones with an improved combination of yield and SSC. As a result of this intraspecific programme, two new improved cultivars (‘Turia’ and ‘Valencia’), which outperform the rest of cultivars available, have been selected for cultivation in Mediterranean conditions. The interspecific programme involved the selection of clones with high yield and SSC in backcross generations. The results show that introgression of genes from the wild species can contribute to improve the SSC of pepino. The backcross programme is in an advanced stage and new cultivars derived from the interspecific crosses are expected to be released in a near future. New prospects for the future in pepino breeding include the genetic transformation, the establishment of a genetic map, and the use of the genomic information from related Solanaceae important crops. All the information obtained is illustrative for the breeding for adaptation of vegetatively propagated crops.     

Evaluation of landrace topcross hybrids of pearl millet for arid zone environments

Pearl millet (Pennisetum glaucum (L.) R. Br.) cultivars for marginal, arid environments need to combine the adaptation to stress conditions of indigenous landraces with an improved yield potential and disease resistance, to allow them to both perform well in farmers fields and to meet the requirements for cultivar release. This paper evaluates landrace-based topcross hybrids (adapted landraces crossed on high-yielding male-sterile lines), as a quick and efficient way of achieving this objective. Topcross hybrids showed a consistent increase in biomass production across all test environments, including the harsh arid zone environments. Depending upon the plant type of the male-sterile used to make the hybrid, this was expressed as increased grain yield only, or increased grain and fodder yields. The downy mildew (Sclerospora graminicola) reaction of the topcross hybrids was determined by the reaction of the male-sterile line used, with the resistant male-sterile producing resistant topcross hybrids and vice-versa. Topcrossing adapted landraces on high-yielding male-sterile lines thus provides an opportunity to improve disease resistance and grain and/or fodder yields, with no apparent loss of adaptation to the marginal environments in which the landraces have evolved.ICRISAT Journal Article no. 1575     

Molecular evidence of outcrossing rate variability in <Emphasis Type="Italic">Brassica napus</Emphasis>

A leafy crop of Brassica napus L. called nabicol has been grown by farmers in northwestern Spain for many years, being an important horticultural product during the winter season. A collection of landraces of a Brassica napus leafy crop called nabicol is kept at ‘Misión Biológica de Galicia’ (CSIC-Spain) which can be used to search for desirable characteristics or to produce new commercial varieties to release in the market. The assessment of the mating system of nabicol landraces is particularly important to carry on adequate breeding and genetic conservation programs. The objective of this work is to estimate the outcrossing rate in nabicol under controlled pollinator conditions using SSRs. Pairs of flowering plants taken from nabicol landrace MBG-BRS0039 were placed in separated isolation cages and bumble bees (Bombus sp.) were released for facilitating the crosses between plants. A seed sample from each plant in the cross was analyzed by SSRs that were polymorphic in the parental population. We found that the crop is partially allogamous and that there is genetic variation for the outcrossing rate among individuals. Several consequences for the maintenance and genetic improvement of the crop are discussed. The existence of genetic variability for this trait is a valuable tool that will allow us to study the genetic mechanisms underlying the mating system of this crop.     

Collard landraces are novel sources of glucoraphanin and other aliphatic glucosinolates

The glucosinolate make‐up of the edible parts of some Brassica oleracea L. crops has been investigated previously, but the leafy‐green collard (B. oleracea var. viridis) remains relatively unstudied on this topic. Due to this lack of information, a collection of US landraces was examined for glucosinolate content of leaves. The specific objectives of this examination were to compare levels of certain glucosinolates among the conserved collard landraces, identify any individuals with a distinct glucosinolate profile and determine the potential of collard as a target for chemoprotective‐based plant breeding. During winter 2010/2011, 81 collard landraces, four other viridis and four collard cultivars were evaluated in the field and harvested leaves were assayed for glucosinolates. In a subsequent study, 19 selected landraces plus the cultivars were included in a repeat trial in 2012/2013. Eighteen collard landraces contained relatively high levels of glucoraphanin in leaves in both years, and three (designated G 32575, G 32580, G 32586 in the US National Plant Germplasm System) were found to contain glucoraphanin in excess of 9.5 μmol/g DM. The examined landraces are rich sources of important aliphatic glucosinolates, previously thought to be most abundant in other B. oleracea vegetables.     

Bringing wild relatives back into the family: recovering genetic diversity in CIMMYT improved wheat germplasm

Summary The dangers of a narrow genetic base of the world's major domesticated food crops have become a great global concern in recent decades. The efforts of the International Maize and Wheat Improvement Center (CIMMYT) to breed common wheat cultivars for resource poor farmers in the developing world (known as the Green Revolution wheats) has met with notable success in terms of improved yield, yield stability, increased disease resistance and utilization efficiency of agricultural inputs. However, much of the success was bought at the cost of an overall reduction in genetic diversity in the species; average Modified Roger's distances (MRD) within groups of germplasm fell from 0.64 in the landraces to a low of 0.58 in the improved lines in the 1980s. Recent efforts by CIMMYT breeders to expand the genetic base of common wheat has included the use of landraces, materials from other breeding programs, and synthetic wheats derived from wild species in the pedigrees of new advanced materials. The result, measured using SSR molecular markers, is a highly significant increase in the latent genetic diversity of recently developed CIMMYT breeding lines and cultivars compared to the original Green Revolution wheats (average MRD of the latest materials (0.63) is not significantly different from that of the landraces, as tested using confidence intervals). At the same time, yield and resistance to biotic and abiotic stresses, and end-use quality continue to increase, indicating that the Green Revolution continues to this day.     

Gene banks and their contribution to the breeding of disease resistant cultivars

Summary Genetic variation in crop species and their wild relatives holds the key to the successful breeding of improved crop cultivars with durable resistance to disease. The importance of the conservation, characterization and utilization of plant genetic resources nationally and internationally has been recognised, though much remains to be done. Gene banks have now been established in many countries and at most of the international crop research centres. Cell and tissue culture techniques and biotechnological aids have done much to ensure the creation and safe transfer of healthy germplasm around the world. Multidisciplinary, international research and collaboration are essential to the successful breeding of improved disease resistant cultivars. Examples are given of the effective use of genetic resources in breeding disease resistant cultivars of a number of crops, including cotton, rice, potatoes and pearl millet.     

Cassava diversity in Ghanaian farming systems

Summary The diversity of cassava was studied in 10 communities spanning a range of socio-economic circumstances and located in the four main agro-ecological zones in Ghana. On average, each farmer grew about two cultivars, mostly landraces, both for home consumption and sale of the storage roots. In total, 35 differently-named landraces were mentioned, 26 in only single communities. Most communities had grown cassava for > 100 years and seem to have acquired an additional landrace about every decade. Landraces were also abandoned. The attributes mentioned of newly-acquired landraces were generally the reverse of landraces abandoned and most were related to the storage roots. All the current landraces in all the communities seem to have been obtained from other communities. None of the almost 300 interviewed farmers understood the role of pollination in setting seed and providing variation amongst seedlings, none purposely planted seeds and most farmers ignored or weeded out cassava seedlings. However, some did use planting material (stem cuttings) from self-sown seedlings, often when planting material from their crops was scarce, and some purposely grew cuttings from a few such seedlings, apparently as experiments. That many seedlings were both reported and seen in newly-planted crops suggests that some may be accidentally used as planting material, especially those seedlings that are perceptually indistinct from the planted crop, resulting in polyclonal landraces.