Yield stability in common bean (Phaseolus vulgaris L.) genotypes

An experiment was undertaken to determine the stability of seed yield in 21 common bean genotypes representing three growth habits. Seven genotypes in each growth habit (determinate bush, indeterminate bush and indeterminate prostrate) were evaluated in replicated trials at three locations for three years under rain fed conditions in Ethiopia. A combined analysis of variance, stability statistics and rank correlations among stability statistics and yield-stability statistic were determined. The genotypes differed significantly for seed yield and genotype × environment (year by location) interaction (GE). The different stability statistics namely Type1, Type 2 and Type 3 measured the different aspects of stability. This was substantiated by rank correlation coefficient. There were strong rank correlations among S_i ²d, W_i ²,σ_i ² and S_i ², where as there was weak correlation between b_iand R_i ², S_i ²d, W_i ², σ_i ² and S_i ². R² was significantly and negatively correlated with W_i ², σ_i ² and S_i ². σ_i ² is significantly correlated with W_i ².Yield is significantly correlated with b_i and R_i ².None of the statistics per se was useful for selecting high yielding and stable genotypes except the YS(yield-stability statistic). Most of the high yielding genotypes were relatively stable. Of the 21 genotypes, only 11genotypes were selected for their high yielding and stable performance. Genotypes with growth habit III and I (in determinate prostrate and determinate bush) were generally more stable than in determinate bush. This revised version was published online in July 2006 with corrections to the Cover Date.     

Breeding the common bean (Phaseolus vulgaris L.) for resistance to bean common mosaic virus: alternatives to backcrossing

A series of field experiments was undertaken in order to determine whether resistance to bean common mosaic virus (BCMV) could be incorporated into genotypes of the common bean (Phaseolus vulgaris L.) suitable for cultivation in Zimbabwe without recourse to backcrossing. Six inbred genotypes carrying the resistance-conferring alleles at the loci I and Bc-3 were crossed with five locally-adapted inbred genotypes. The first experiment comprised F₃ progeny rows, each derived from a single unselected F₂ plant, the second, F₃ bulks selected for resistance, and the third, a comparison of selected and unselected F₂-derived F₄ lines. The number of days to flowering and to maturity, the incidence of mosaic and necrosis symptoms, seed yield and seed size were recorded. There was evidence that late flowering and maturity were associated with BCMV resistance in some crosses, though not strongly enough to present an obstacle to plant breeding. The incidence of virus symptoms and seed yield were influenced by genetic factors additional to the major resistance genes, and variation in seed yield was present not only between bulk populations of crosses, but also between single-row plots of lines within crosses. This indicates that early-generation selection for yield in the presence of BCMV, even among progeny selected for BCMV-resistace, is likely to be effective. However, the variation in yield among F₄ lines was least in the highest-yielding crosses, which may represent a limit to successful selection for yield. Seed size was partly under additive genetic control, but there was also evidence of non-allelic interactions. There was no association between large seed size, preferred by consumers, and susceptibility to BCMV in the progeny, indicating that the association between these characters in the parent lines is fortuitous and will not present an obstacle to plant breeding. It is noted that a considerable amount of useful genetic information can be obtained without recourse to elaborate crossing schemes, provided that unselected progeny are included in experiments as controls. The evidence presented indicates that resistance to BCMV can be combined with appropriate values of maturity date, yield and seed size without the need for backcrossing.     

Genetic control of low temperature tolerance in germination of the common bean (Phaseolus vulgaris L.)

Summary Cultivars tolerant to low temperature during the germination and emergence stages and carriers of the grain quality standards demanded by consumers are needed to increase the success of irrigated common bean in Southern Minas Gerais State. To study the genetic mechanisms controlling these traits and assess the possibility of generating the desirable materials, a diallel cross involving ten cultivars including introductions and pure lines from the breeding program of ESAL was carried out. Speed of germination of the F₂ generation from the crosses was assessed under laboratory conditions at 12°C. The diallel analysis was carried out using Griffing's method IV (1956) and predictions of the cross potential were made by the methodology developed by Jinks & Pooni (1986). The results indicated that the parents differed in germination speed at low temperatures with Small White, A-488 and Rio Vermelho being the most tolerant and Carioca, ESAL 591 the most sensitive. No effect of the reciprocal crosses was observed either for germination percentage or germination speed. The parents A-488, Small White and Rio Vermelho showed the greatest general combining ability. Additive genetic effects predominated for both traits. Our results suggest that cold tolerance can be bred successfully into commercially acceptable cultivars.     

Growth analysis in a reduced leaf mutant of common bean (Phaseolus vulgaris L.)

Summary A comparison between the Royal Red bean variety and a reduced leaf mutant on the basis of growth indices is reported. The mutants has lower leaf area index (LAI) and leaf area duration (LAD) (–43.7%), higher specific leaf weight (SLW) (on the mean +33.3%) and accumulates less dry matter (–7.7%) than the normal genotype. When the net assimilation rate (NAR) is considered, the mutant is superior to the normal (+62.3%). It is concluded that the unit area of the mutant leaves accumulates dry matter more efficiently than that of the corresponding normal variety.     

Marker-assisted selection for complex trait in common bean (Phaseolus vulgaris L.) using QTL-based index

A procedure was developed for marker-assisted selection of complex traits for common bean (Phaseolus vulgarisL.) using an index based on QTL-linked markers and ultrametric genetic distances between lines and a target parent. A comparison of the mean seed yields of the top five lines selected by different schemes demonstrated that the highest yielding group was selected on the basis of a combination of phenotypic performance and a high QTL-based index,followed by groups identified by a high QTL-based-index, conventional selection,and a low QTL-based-index. This study demonstrated a simple way to use information obtained from QTL studies to make selection decisions. The study also showed that the use of the QTL-based-index in conjunction with the ultrametric genetic distance to the target parent would enablea plant breeder to select lines that retain important QTL in a desirable genetic background. Therefore, this type of MAS would be expected to be superior to the phenotypic selection. This revised version was published online in August 2006 with corrections to the Cover Date.     

Traits associated with dry edible bean (Phaseolus vulgaris L.) productivity under diverse soil moisture environments

Two experiments were conducted in the Rift Valley, Ethiopia (8°N and 39°E) to determine associations between eight plant traits and seed yield, and to obtain estimates of narrow sense heritability for the traits. Experiment I evaluated seven dry edible bean cultivars/lines at two locations to simulate different soil moisture stress, including, Debre Zeit(non-stress) and Dera (moderate-stress). Experiment II evaluated 25 cultivars/lines in three environments including, Melkassa early planted (non-stress), Melkassa late planted (high-stress), and Dera (moderate-stress). A randomized-complete-block design with three replicates was used in both experiments. Plant traits evaluated were seed yield, pods plant^-1, seeds pod^-1, 100 seed weight, root dry weight, hypocotyl diameter, plant biomass, plant height and days to flowering. Plant traits that were significantly associated with seed yield were included in a stepwise-regression model to determine which trait or combination of traits provided the best model to estimate seed yield in each environment. An analysis of variance was conducted to test main effects and interactions between plant traits and environments. Significant variation among lines occurred for seed yield and all plant traits in both experiments. Strong positive correlations were observed between plant biomass and seed yield in all environments. Seed yield and pods plant^-1 were also highly associated in four of the five environments. Stepwise regression models indicated that the combination of pods plant^-1 and plant biomass consistently contributed to seed yield prediction, while other traits did not. Because both plant biomass and pods plant^-1 had moderate to high narrow sense heritability estimates and low GE interactions, they should be useful as indirect selection criteria to improve and stabilize seed yield in a breeding program. This revised version was published online in July 2006 with corrections to the Cover Date.     

HPLC analyses of seed storage proteins reveal polymorphism in Italian common bean (Phaseolus vulgaris L.) ecotypes

Phaseolin (PHAS) and phytohemagglutinin (PHA) represent the main seed protein fractions in common bean. Currently, several ecotypes of common bean cultivated in marginal areas exist, above all in Southern Italy regions. Such germplasm could be lost due to the genetic uniformity of new cultivars. Moreover, the first step to obtain community recognition and denomination requires the full characterization of the available germplasm. In the present study, PHAS and PHA extracted in saline solutions from nine ecotypes of common bean ‘di Controne’ (Campania region) were analysed by anionic and cation exchange-high performance liquid chromatography (AE- and CE-HPLC), SDS-PAGE and IEF. The results obtained by AE-HPLC have allowed us either to standardize a high resolution, cost-effective and time-saving biochemical methodology or to compare the studied ecotypes with some cultivars of common bean most widely grown in Italy. The elution profiles of the nine ecotypes, already analyzed at the morpho-physiological and molecular levels, allowed us to differentiate the ecotypes either from a qualitative point of view (presence/absence of one or more peaks) or a quantitative one. For instance, the ecotypes of common bean ‘di Controne’ could be clearly differentiated from some commercial cultivars of dwarf and/or climbing bean. In contrast, the analysis of the electrophoresis patterns supplied less information. This revised version was published online in July 2006 with corrections to the Cover Date.     

Combining ability for nodulation in common bean (Phaseolus vulgaris L.) genotypes from Andean and Middle American gene pools

Ten F₁'s obtained from crosses among five common bean genotypes of Andean (WAF 15, Mineiro Precoce and Batatinha) and Middle American (BAT 304 and Ouro) gene pools were assessed for their combining abilities for root nodulation with Rhizobium tropici strain CIAT 899. The plants were grown under controlled conditions and evaluated for number of nodules per plant (NN), nodule dry weight (NDW), mean nodule weight (MNW) and plant fresh weight (PFW). The subdivision of the treatment effects on the general (GCA) and specific combining effects (SCA) were performed according to Griffing's diallel analysis method 2, model 1. The analyses of variance and estimates of quadratic components showed that non-additive gene effects were more important in the expression of NN and PFW, whereas additive gene effect was predominant for NDW and MNW. A close association was observed between high number of nodules and GCA. Generally, crosses involving parents of different gene pools yielded hybrids with high positive estimates of SCA for all assessed traits. The genotypes of Andean origin WAF 15 and Mineiro Precoce are the most promising parents for breeding programs to increase NN and NDW in common beans. This revised version was published online in July 2006 with corrections to the Cover Date.     

Improving adaptation to drought stress in white pea bean (Phaseolus vulgaris L.): Genotypic effects on grain yield,yield components and pod harvest index

Common bean (Phaseolus vulgaris L.) is the most important food legume crop in Africa and Latin America where rainfall pattern is unpredictable. The objectives were to identify better yielding common bean lines with good canning quality under drought, and to identify traits that could be used as selection criteria for evaluating drought‐tolerant genotypes. In all, 35 advanced lines were developed through single seed descent and evaluated with a standard check under drought and irrigated conditions at two locations over 2 years in Ethiopia. Grain yield (GY), pod number per m², seed number per m² and seed weight decreased by 56%, 47%, 49% and 14%, respectively, under drought stress. Eight genotypes had better yield with good canning quality under drought compared to the check. Moderate to high proportion of genetic effects were observed under drought conditions for GY and yield components compared to genotype × environment effects. Significant positive correlations between GY and pod harvest index (PHI) in drought suggest that PHI could be used as an indirect selection criterion for common bean improvement.     

Inheritance of temperature sensitivity of the photoperiod response in common bean (Phaseolus vulgaris L.)

Summary Photoperiod response of flowering in common bean (Phaseolus vulgaris L.) is thought to be controlled by the genes Ppd and Hr. However, cultivars also vary in the degree that cooler temperatures reduces their sensitivity to photoperiod. To examine the inheritance of this temperature sensitivity, crosses of cvs. Gordo x de Celaya and Flor de Mayo × Rojo 70 were evaluated at two sites differing in mean temperature and using 12.5-h natural photoperiod or 18-h artificially extended photoperiod. Under 18-h photoperiod at the warmer site, Palmira, no plants of the parents or of the F₂ populations flowered, confirming that the parents were sensitive to photoperiod. Under 12.5-h photoperiod at the cooler site, Popayan, the parents for each cross flowered at similar dates and no segregation for days to flower was observed. However, under 18-h photoperiod, de Celaya and Rojo 70 and the F₁ populations did not flower within 100 days after planting, while the F₂ and F₃ populations showed segregation that was consistent with single gene inheritance, late flowering being dominant. Late flowering at Popayan under 18-h photoperiod indicates a lack of temperature sensitivity, so temperature insensitivity of the photoperiod response was dominant to sensitivity. The name Tip, for temperature insensitivity of photoperiod response, is proposed for this gene, with the recessive form of this gene conditioning earlier flowering at cooler temperatures with long daylengths. It is recognized that the observed segregation patterns could represent the effect of multiple alleles at the Ppd or Hr loci, and studies are proposed to test this possibility with molecular markers and recombinant inbred lines.     

Characterization of resistance to angular leaf spot of common bean (Phaseolus vulgaris L.) breeding line SPS50HB

The common bean (Phaseolus vulgaris L.) makes an important contribution to the human diet, particularly in Africa and Latin America. Because angular leaf spot (ALS), caused by the fungal pathogen Pseudocercospora griseola, is one of the most severe foliar diseases of the bean plant, an important priority is to identify genes encoding resistance. The present study focused on the resistance shown by the Mesoamerican common bean breeding line SPS50HB. From the pattern of segregation for resistance displayed in an F₂ population bred from a cross between SPS50HB and the ALS-susceptible Ethiopian variety Red Wolaita, it was concluded that the resistance of SPS50HB is controlled by two unlinked dominant genes. An allelism test indicated that one of these genes was either identical with, allelic to, or closely linked to the major gene Phg-2 carried by variety Mexico 54. The sequence-characterized amplified region assays OPEO4 and PF13, which are diagnostic for an ALS resistance gene carried by the germplasm accession G10909, both tracked a possible second gene present in SPS50HB.     

Phenotypic variation in a core collection of common bean (Phaseolus vulgaris L.) in the Netherlands

Forty accessions, forming a core collection of mainly bush type of the common bean (Phaseolus vulgaris L.) germplasm in the Netherlands, were evaluated for 14 qualitative and quantitative traits at the Agricultural University, Wageningen (WAU), the Netherlands in 1992. These and an additional 117 Dutch accessions, mainly collected in private home gardens, were also evaluated for phaseolin seed protein pattern, and morphological and agronomic traits at the International Center for Tropical Agriculture (CIAT, Spanish acronym), Cali, Columbia between 1987 and 1997. Multivariate and principal component analyses at both WAU and CIAT indicated existence of one large group with no discernable patterns among Dutch common bean collections of landraces, garden forms and cultivars. However, when phaseolin, an evolutionary, biochemical marker, was used as an initial classification criterion followed by use of morphological markers, the two major gene pools; Andean and Middle American with two races in each (Chile and Nueva Granada in Andean, and Durango and Mesoamerica in Middle American) were identified. The Andean gene pool was predominant (136 of 157 accessions), especially the race Nueva Granada (126 accessions) characterized by the bush determinate growth habit type I and T phaseolin. The new core collection comprised 31 accessions. Bean races Chile, Durango, and Mesoamerica were represented by 10, 7, and 14 accessions, respectively. Of the 9 French or snap bean accessions six possessed characteristics of race Mesoamerica and three belonged to Durango race. Occurrence of these and a large number of other recombinants strongly suggested considerable hybridization and gene exchange between Andean and Middle American gene pools, thus blurring the natural boundaries and forming a large single group of common bean germplasm in the Netherlands. The inter-gene-pool recombinants of both dry and French beans should be of special interest to breeders for use as bridging-parents for development of broad-based populations. This revised version was published online in July 2006 with corrections to the Cover Date.     

Combining ability of common bean (Phaseolus vulgaris) genotypes for root traits across diverse environments

Root system architecture is important for common bean (Phaseolus vulgaris) adaptability to diverse environments. Beans employ complex adaptive root mechanisms for coping with multiple stresses in production environments. Understanding genetic control of root traits is central to improvement of common bean for adaptation to marginal environments. The objectives of this study were to (i) determine combining ability of root and agronomic traits and (ii) estimate the heritability and genetic correlation of root and agronomic traits in common bean. Four bean lines with superior root traits were crossed with four locally adapted varieties in a North Carolina II mating scheme to generate 16 crosses. The 16 F₁s were selfed and advanced to F₂ generation. Eight parents and their F₂ progenies were evaluated in an alpha-Lattice design with two replications. General and specific combing ability mean squares were significant (p ≤ .05) for all traits measured. General predictability ratios ranged from .47 to .68 across locations suggesting that both additive and non-additive gene action modulate root traits and seed yield. Positive and significant (p ≤ .05) phenotypic and genetic correlations revealed significant association between root traits and yield. Moderate to high heritability estimates of between .43 and .67 were realized. Such estimates point to possible deployment of a successful selection programme. Genotype AFR398 displayed significant positive GCA effects among its crosses for both root and agronomic traits hence a potential candidate genotype for inclusion in a bean genetic improvement programme for marginal environments.     

Random amplified polymorphic DNA variation within and among bean landrace mixtures (Phaseolus vulgaris L.) from Tanzania

Genetic characterization of 51 individual pure lines from 13 landraces of three common bean (Phaseolus vulgaris L.) mixtures from the southern highlands of Tanzania was undertaken using random amplified polymorphic DNA (RAPD) analysis. A dendrogram generated by cluster analysis from data derived from fragments amplified by 12 random 10-base primers divided the bean individuals onto two main branches with less than 60% genetic similarity. Branches A and B subdivided into two and four clusters, respectively. Mixture 2, comprising three landraces, was the most uniform, most plants appearing on cluster 4 of branch B. Three of the four landraces of mixture 1 appeared on cluster 3 of branch B while the fourth landrace appeared on major branch A. Mixture 3 showed the greatest genetic variation with components appearing on both major branches. The clear separation of the 13 landraces onto two main branches of the dendrogram together with phenotypic characters, notably variation in bean size, suggests that the two groups might represent two distinct gene pools of P. vulgaris. This revised version was published online in July 2006 with corrections to the Cover Date.     

Variation of the storage protein phaseolin in common bean (Phaseolus vulgaris L.) from the Mediterranean area

Summary Variation of phaseolin, the major storage protein in Phaseolus vulgaris L., was analysed in seeds of a germplasm collection from the Mediterranean area. Results showed a number of subvariants differing from the reference patterns for the presence, absence or faintness of single polypeptides. Maximum concentration of variation was found in the Cyprus material. Sources and causes of variation are discussed.     

Effect of photoperiod and temperature on common blight disease of common beans (Phaseolus vulgaris L.)

Summary Although common blight disease is serious in many dry bean production areas, there is only limited information on the influence of photoperiod on the disease. Experiments were conducted in growth chambers and in the field (Nebraska, Dominican Republic, Puerto Rico) to investigate the influence of photoperiod × temperature and photoperiod, respectively, on the reaction of cultivars/lines to the causal bacterium Xanthomonas campestris pv. phaseoli. A split-plot design was used in all experiments except in the DR experiment where cultivars/lines were replicated within each photoperiod treatment. The disease reactions were more severe on cultivars/lines under short photoperiod and under higher temperature than under longer photoperiod and lower temperature in the growth chamber. Disease reactions were also more severe under the short photoperiod in the field experiments. No interactions were detected among these factors. These results have important implications for plant breeders in the evaluation of common blight disease reactions in different latitudes.     

Development of common bean (Phaseolus vulgaris L.) lines resistant to the bean pod weevil,Apion godmani Wagner,in Central America

Summary The larva of the bean pod weevil (BPW), Apion godmani Wagner (Coleoptera: Curculionidae), causes serious yield losses in common bean (Phaseolus vulgaris L.) in Mexico and Central America, by consuming the seed as it develops in the immature pod. Resistance to the BPW was identified in bean germplasm of highland Mexican origin, and these sources of resistance were incorporated into a pedigree breeding program to recover locally adapted lines resistant to Bean Common Mosaic Virus and BPW, with commercial grain for Guatemala, Honduras and El Salvador. These lines yielded as well as or better than local cultivars in the absence of the insect, and better than local cultivars when the BPW was present. Resistance appeared to be governed by several genes, and was stable across geographic areas, seasons and planting systems.     

Biotechnology as a useful tool in common bean (Phaseolus vulgaris L.) improvement

In this review paper requirement to new cultivars applying biotechnological tools in common bean (Phaseolus vulgarisL.) breeding and existing literature and available data are discussed. Application of different methods for in vitro cultivation, transformation, gene mapping and techniques for genome analysis are described. Further works needed in some investigations are also presented. The relation between traditional bean breeding methods and plant biotechnology techniques are addressed. It is concluded that all these techniques will help creating more genetic diversity, which is the main bean-breeding goal, particularly for the most important agricultural traits. The review contains 118 references. This revised version was published online in July 2006 with corrections to the Cover Date.