Aggressiveness of Isolates of Phytophthora infestans from the Columbia Basin of Washington and Oregon

ABSTRACT The aggressiveness of 22 isolates of Phytophthora infestans collected from naturally infected potato plants in the Columbia Basin of Washington and Oregon was determined on detached potato leaflets at 18 degrees C in an incubator. Selected isolates were evaluated on whole plants in a greenhouse. Aggressiveness was measured by using the area under the lesion expansion curve (AULEC), incubation period, latent period, sporulation capacity, and lesion size on detached leaflets and the area under the disease progress curve and sporulation capacity on whole plants. The detached-leaflet assay was useful in that a large number of isolates were tested, several components of aggressiveness were studied, and significant differences were found among isolates. Significant variation for components of aggressiveness was found within and among isolates classified according to genotype. Significant interactions among isolates and cultivars were found for some components of aggressiveness, so results were pooled according to cultivar. On average, US-8 and US-11 isolates had higher AULEC scores, indicating aggressiveness higher than that of US-7, US-6, and US-1 genotypes. One US-8 genotype isolate had a higher standardized sporulation capacity than isolates of the other genotypes. US-6 genotype isolates were the least aggressive group, as indicated by low AULEC, sporulation capacity, and lesion size values. The replacement of the US-1 genotype by the US-8 genotype in the Columbia Basin may be partially explained by the increased aggressiveness of US-8 isolates. Additionally, potato growers may need to shorten intervals between fungicide applications and begin applications earlier.     

Characterization of isolates of Phytophthora infestans collected in northwestern France from 1988 to 1992

Isolates of the potato late-blight pathogen Phytophthora infestans , collected in several French regions from 1988 to 1992, were characterized in order to determine the structure and pathogenicity of French populations and to compare them with other European samples. All 254 French isolates tested were of the Al mating type, as were two Sicilian, five Portuguese and one Spanish isolate. Metalaxyl sensitivity of 157 isolates was investigated. The frequency of resistance to this chemical decreased in western France from 1989 to 1992. Two glucose phosphate isomerase phenotypes (90/100 and 90/90) were detected among the 46 isolates tested; the former largerly predominated (75–80%) in the samples investigated. Both phenotypes corresponded to the population recently introduced into Europe. A third genotype (86/100), typical of the former European population, was found in one isolate from Picardy, originating from an artificially infected field trial. Five isolates from Portugal and Italy were of the 100/100 phenotype. Race patterns among 26 isolates from western France were very similar, and could not be explained by local selection. The unusual composition of the Brittany population, consisting of 'new' genotypes but all belonging to the Al mating type, is possibly related to the metapopulation type of structure of P. infestans in Europe.     

Population Genetic Structure of Phytophthora infestans in Ecuador

ABSTRACT The population genetic structure of Phytophthora infestans in Ecuador was assessed from 101 isolates collected from 1990 to 1992 and 111 isolates collected in 1993. All isolates were analyzed for mating type and allozyme genotype. Both samples were dominated (>95%) by a clonal lineage (EC-1) defined from neutral markers: 90/100 genotype for glucose-6-phosphate isomerase, 96/100 genotype for peptidase, A1 mating type, and a previously unreported nuclear DNA fingerprint. The remaining isolates belonged to the US-1 clonal lineage, which has a worldwide distribution. Isolates in the 1993 sample were analyzed for virulence and metalaxyl sensitivity. All representatives of EC-1 had complex patho-types, with three pathotypes representing >60% of the collection. There was variation for metalaxyl sensitivity. There was no evidence for geographical substructuring on the basis of neutral markers, but there was evidence for limited substructuring based on metalaxyl sensitivity and specific virulence. We hypothesize that EC-1 has been recently introduced to Ecuador.     

Population genetic analysis of Phytophthora infestans in northwestern China

Late blight caused by Phytophthora infestans is the most devastating disease of potato worldwide. To understand the P. infestans population structure and dynamics in northwestern China, 959 single‐lesion isolates were purified in three consecutive years (2009–2011) and were characterized for mating type, pathotype, mtDNA haplotype and molecular variation at eight SSR loci. The results showed that the distribution of mating types changed significantly over years, with self‐fertile isolates dominant in 2010 and 2011. SSR genotyping distinguished 959 isolates into 151 genotypes, and association analysis indicated that P. infestans populations in 2010 and 2011 were strictly asexual while in 2009 they showed signs of sexual reproduction. Population analysis showed that the majority of genetic variation was within P. infestans populations. Isolates sharing identical SSR genotypes were detected in distant regions, indicating that migration of P. infestans could have occurred between regions. Pathogenicity assays on a set of potato differential lines containing R1 to R11 resistance genes detected four pathotypes from 74 selected isolates, with the pathotype virulent against all 11 R genes being dominant. Three mtDNA haplotypes (Ia, IIa, IIb) were detected with Ia being dominant among 507 isolates examined. Phylogenetic analysis indicated that P. infestans populations in northwestern China are distant from European lineages including 13‐A2 (blue‐13) at the time of this survey. The results have implications for the trade of healthy seed tubers as a means of managing late blight.     

Persistence of Complex Virulences in Populations of Phytophthora infestans in Western Washington

ABSTRACT Isolates of Phytophthora infestans, collected from bittersweet, hairy nightshade, petunia, potato, potato vine, and tomato in western Washington, 1998 to 1999, were evaluated for virulence complexity as well as mating type, metalaxyl insensitivity, allozymes of glucose-6-phosphate isomerase and peptidase, and DNA fingerprint with the RG57 probe. Results were compared with those from similar collections made in the same region during the 1990s. Generally, virulence complexity was high for most of the isolates regardless of year, genotype, or host. No marked shift in virulence complexity was evident for the populations studied, and unnecessary virulences were maintained. During 1998 and 1999, isolates of the US-8 and US-11 genotypes had 4 or more virulence factors. US-8 isolates averaged 8.2 and 9.3, whereas US-11 isolates averaged 5.4 and 6.3 virulence factors. The frequency of US-8 isolates that were sensitive to metalaxyl ranged from 5% in 1998 to 72% in 1999. All of the US-11 isolates tested in 1998 and 1999 were insensitive to metalaxyl. From 1996 to 1999 on potato, the recovery of US-8 increased, whereas the recovery of US-11 decreased. No evidence of new genotypes or sexual recombination was found. Western Washington was a desirable location for screening germ plasm for durable resistance to late blight due to the high frequency and persistence of complex virulences.     

Characterization of some Asian isolates of Phytophthora infestans

A total of 401 isolates of Phytophthora infestans were collected from eight Asian regions (Korea, India, Taiwan, Indonesia, Thailand, Nepal, China and Japan) between 1992 and 2000 – 318 from potato and 83 from tomato. The isolates were analysed for mating type, metalaxyl resistance, RG57 fingerprinting, mitochondrial DNA (mtDNA) haplotype and the polymorphism of three allozyme loci, i.e. glucose-6-phosphate isomerase ( Gpi ), peptidase ( Pep ) and malic enzyme ( Me ). The isolates were multilocus-genotyped based on RFLP (RG57) fingerprint, dilocus allozyme genotype, mtDNA haplotype and mating type. Twenty multilocus genotypes were identified among 125 isolates. Of these genotypes, 14 had not been previously reported. Some of the multilocus genotypes were common to isolates from several geographical regions, suggesting migration. The metalaxyl-resistant isolates belonged to the multilocus genotypes JP-1, JP-2, and JP-3. Multilocus genotypes coexisting in a single field were found in following regions: Thailand (1994), central China (1996), Nepal (1997) and Japan (1998 and 2000). The possible origins of certain genotypes are discussed, including the possibility of sexual recombination within the P. infestans populations in Nepal and perhaps Thailand.     

Population changes in Phytophthora infestans in Taiwan associated with the appearance of resistance to metalaxyl

In recent years, late blight, caused by Phytophthora infestans (Mont) De Bary, has increased in severity in many parts of the world, and this has been associated with migrations which have introduced new, arguably more aggressive, populations of the pathogen. In Taiwan, late blight has been endemic on outdoor tomato crops grown in the highlands since the early 1900s, but recent epidemics have been more damaging. To ascertain the present status of the Taiwanese population of P infestans, 139 isolates of the pathogen collected and maintained by the Asian Vegetable Research and Development Center (AVRDC) were characterized using mating type, metalaxyl sensitivity, allozyme genotype, mitochondrial haplotype and RFLP fingerprinting. Up to 1997, all isolates were found to belong to the old clonal lineage of P infestans (US-1 and variants), but in isolates from 1998 a new genotype appeared, and by 2000 this had apparently completely displaced the old population. This new genotype was an A1 mating type and has the dilocus allozyme genotype 100/100/111, 100/100 for the loci coding for glucose-6-phosphate isomerase and peptidase, respectively. These characters, together with RG57 fingerprinting, indicated that these isolates belonged to the US-11 clonal lineage, a minority (11%) being a previously unreported variant of US-11. Whereas metalaxyl-resistant isolates were not detected in the old population, 96% of the new genotypes proved resistant, with the remainder being intermediate in sensitivity. It may be inferred from this sudden, marked change in the characteristics of the Taiwanese P infestans that a new population of the pathogen was introduced around 1997-98 and that this may well have already been metalaxyl-resistant when it arrived, although a role for in situ selection cannot be excluded.     

Population structure of Phytophthora infestans collected on potato and tomato in Italy

Late blight caused by the oomycete Phytophthora infestans is a disease of potato and tomato of worldwide relevance and is widespread throughout Europe and the Mediterranean region. While pathogen populations in northern Europe have been sampled and characterized for many years, the genetic structure of populations from southern Europe, including Italy, has been less studied. Between 2018 and 2019, we collected 91 samples of P. infestans from potato and tomato crops in Italy, Algeria, and Tunisia on FTA cards and genotyped them using 12-plex microsatellites. These samples were compared to genotypes of P. infestans previously collected within the framework of the EuroBlight network and from published sources. Four clonal lineages were identified: 13_A2 (Blue 13), 2_A1, 23_A1, and 36_A2. Two other isolates collected could not be matched to any currently known clonal lineage. The 13_A2 and 36_A2 lineages were found exclusively in southern Italy and Algeria, while 2_A1 was only found in Algeria. This is the first report of the 36_A2 lineage in Italy. Two isolates from Solanum nigrum were 13_A2, suggesting this weed host could be a reservoir of inoculum. The 23_A1 lineage was found widely on infected tomato crops in Italy and is the same as the lineage US-23 that is widespread in North America. Differences in genotypes across the country suggests that there may be different sources of introduction into Italy, possibly via infected seed tubers from other countries in Europe, tubers for consumption from North Africa, or tomatoes.     

Diversity of Phytophthora infestans from Poland

A collection of 96 Polish isolates of Phytophthora infestans sampled in the years 2006, 2008 and 2009 were analysed using phenotypic and genotypic markers. Mating type, virulence, resistance to metalaxyl, mitochondrial haplotype and polymorphism at 12 simple sequence repeat (SSR) loci were determined. The majority of isolates were of the A1 mating type, mitochondrial haplotype Ia and sensitive to metalaxyl. Virulence factors against potato R genes R1, R3, R4, R7, R10 and R11 were present in most isolates. Genotyping using SSR markers revealed high genetic diversity within the Polish P. infestans population. Amongst the 96 isolates 66 unique genotypes were identified, 49 of which were observed only in single isolates. Eight isolates of the genotype 13_A2 lineage that has been reported in other parts of Europe were also found in Poland. The implications of these results are discussed.     

Population Structure of Phytophthora infestans in the Toluca Valley Region of Central Mexico

ABSTRACT We tested the hypothesis that the population of Phytophthora infestans in the Toluca valley region is genetically differentiated according to habitat. Isolates were sampled in three habitats from (i) wild Solanum spp. (WILD), (ii) land-race varieties in low-input production systems (RURAL), and (iii) modern cultivars in high-input agriculture (VALLEY). Isolates were sampled in 1988-89 (n= 179) and in 1997-98 (n= 389). In both sampling periods, the greatest genetic diversity was observed in RURAL and VALLEY habitats. Based on the Glucose-6-phosphate isomerase and Peptidase allozymes, the subpopulations from the three habitats were significantly differentiated in both sampling periods. In contrast to allozyme data for 1997-98, no differences were found among the three subpopulations for sensitivity to metalaxyl. Two groups of isolates identical for allozyme and mating type were further investigated by restriction fragment length polymorphism fingerprinting; 65% of one group and 85% of another group were demonstrated to be unique. The genetic diversity data and the chronology of disease occurrence during the season are consistent with the hypothesis that populations of P. infestans on wild Solanum populations are derived from populations on cultivated potatoes in the central highlands of Mexico near Toluca.     

Characteristics of Phytophthora infestans Isolates from Uruguay

Isolates of Phytophthora infestans were obtained from late blighted plants from several potato-growing regions of Uruguay in 1998 and 1999. Of these, 25 representative isolates (4 from 1998, 21 from 1999) from the main potato-growing areas of the country, were characterised in terms of mating type, metalaxyl resistance, allozyme genotype, mitochondrial haplotype, RG57 fingerprint (1999 isolates only) and pathotype. All isolates proved to be A2 mating type, monomorphic and homozygous at the loci coding for glucose-6-phosphate isomerase and peptidase (Gpi 100/100, Pep 100/100) and to possess mitochondrial haplotype IIa. Metalaxyl-resistant isolates constituted 92% of the total. All the 1999 isolates possessed the same RG57 fingerprint, which was that previously reported as associated with the clonal lineage BR-1 from Brazil and Bolivia, which is also A2, Gpi 100/100, Pep 100/100. Most of the isolates displayed broad-spectrum virulence and five carried virulence to 10 of the 11 R genes tested despite the absence of R genes in commercially grown potato cultivars. It was concluded that the Uruguayan P. infestans isolates resembled isolates from neighbouring South American countries, notably Brazil, and belong to the new populations of the pathogen now predominant in many countries.     

Characterization of Phytophthora infestans populations of southern Brazil in 2004 and 2005

The populations of Phytophthora infestans (Pi) in southern Brazil in 2004 and 2005 are characterized herein. The isolates were collected from potato and tomato plants in the states of Paraná (PR), Santa Catarina (SC), and Rio Grande do Sul (RS). The mating type of 131 potato and 32 tomato isolates was determined. Forty-nine isolates from potatoes and 11 from tomatoes were analyzed for their Gpi phenotype. A subset of 35 isolates was evaluated for mitochondrial (mtDNA) polymorphisms. A sample of 146 isolates was tested for sensitivity to the fungicide metalaxyl, and most isolates (64%) were moderately sensitive. Fifty-nine isolates were classified as A1 mating type and 103 as A2. One isolate behaved as both A1 and A2 mating type. All tomato isolates were A1 mating type and presented the 86/100 pattern for the enzyme GPI and mtDNA Ib, indicating that these isolates belong to the US-1 clonal lineage. Of the 131 potato isolates, 103 were A2, 27 were A1 and one was A1/A2 mating type. Among the potato isolates 27 exhibited the Gpi phenotype 100/100, the same as BR-1, and 20 were 86/100, the same as US-1. Potato isolates presented the mitochondrial haplotypes Ia (74%) and IIa (26%). The data suggest the presence of only the BR-1 clonal lineage on potatoes in the states of PR and SC. However, in the state of RS, more than one clonal lineage was observed infecting potatoes, and there may be sexual reproduction between the lineages.     

The effect of phenylamide fungicides on the control of potato late-blight (Phytophthora infestans) in England and Wales from 1978 to 1992

During the period 1978–1992, phenylamide fungicides in co-formulation with the dithiocarbamate fungicide mancozeb were tested for the control of potato late-blight in 51 separate field experiments in England and Wales. Whilst there was a general trend over all the experiments which indicated that foliage blight was less severe where the phenylamide + dithiocarbamate mixture had been used, the benefit was more marked in some than in others. Despite the detection of phenylamide resistance, at some sites the mixture gave better control of foliage blight than the dithiocarbamate alone. At one site where continuous data were available, the additional benefit of the phenylamide compound for control of foliage infection was lost after 1986 coinciding with a rise in phenylamide resistance from 31.7% in 1986 to 81% in 1987. Where foliar blight epidemics occurred, yield responses to fungicide programmes compared with unsprayed controls ranged from 0 to +118.5% with a mean response of +30.2%. This is equivalent to 30.8 and 12.92 t/ha respectively. Standardized yield differences were calculated to allow inter-trial and inter-year comparisons and showed no benefit from the phenylamide fungicide applied at 14-day intervals in 33 out of 38 experiments where foliar blight epidemics occurred. At one site, Cusum analysis of standardized yield differences following treatment with the phenylamide + dithiocarbamate mixture and the dithiocarbamate alone showed a mean benefit from the phenylamide mixture of 2.23 t/ha during the period 1978 to 1986. From 1987 to 1992, the yield benefit dropped to a mean level of 0.68 t/ha a decrease of 69.5%. In experiments where blight was not recorded, fungicide treatments had no deleterious effect on yields. Over all the trials, there was no effect of fungicide treatment on the incidence of tuber blight at harvest.     

Variation in sensitivity of Phytophthora infestans to fosetyl-Al

Twenty-three field isolates of Phytophthora infestans from North America, Europe and Israel were tested for sensitivity to fosetyl-Al on rye-seed-agar medium and on leaf discs from 12 potato cultivars. Sensitivity varied greatly between fungal isolates; their sensitivity in vitro was not significantly correlated with sensitivity in vivo. In vivo , there was a significant effect of potato cultivars on sensitivity, which interacted with fungal isolates. The fungicidal effect of fosetyl-Al was greater on older than on younger leaves, and greater with a 12-h photoperiod than in continuous light. Sensitivity of isolates to fosetyl-Al was significantly correlated with sensitivity to phosphorous acid (tested in vitro ) but was not correlated with sensitivity to metalaxyl (tested in vitro and in vivo ). The results explain some of the controversial reports on the efficacy of fosetyl-Al in controlling potato late blight.     

Resistance to metalaxyl in Phytophthora infestans in the Netherlands

Two hundred and twenty two isolates ofPhytophthora infestans from infected potato foliage or tubers, obtained in 1981 from different potato fields in various regions of the Netherlands, were tested for their ability to infect potato leaf discs floating on solutions of metalaxyl of various concentrations. Isolates were designated as resistant to metalaxyl when sporulation occurred at a concentration of 1 g ml^–1 or higher.Forty-one isolates appeared to be resistant. Thirty-five of the resistant isolates and 29 sensitive ones originated from three areas involving circa 15% of the total Dutch potato acreage. In these areas 28% of the fields sampled were metalaxyl-treated and 78% of these fields yielded resistant isolates. Only one of the three areas had a history of metalaxyl resistance in 1980. Six metalaxyl-resistant and 152 sensitive isolates were found in potato fields in other areas including those with major problems of resistance in 1980. All of four old potato cull piles sampled in the latter areas yielded metalaxyl-resistant isolates and two of these sites had possibly been inoculum sources for nearby potato fields. Only 9% of the fields sampled in these areas were metalaxyl-treated and none of these yielded a metalaxyl-resistant isolate.The data are compatible with the idea that infected seed potatoes were the major source of the incoculum that initiated the early and severe late blight epidemic in 1981 in the Netherlands. The severity has been enhanced by late-blight-conducive weather conditions during the emergence of the crop and its early stages of development, when fungicides had not yet been applied. Old potato cull piles are assumed to have been less important in starting the 1981 epidemic.Apparently, infected seed potatoes carried predominantly metalaxyl-sensitive strains, which explains the prevalence of metalaxyl-sensitive strains in most of the fields. In 1980, the seed potato crop had been harvested before the problem of metalaxyl-resistance surfaced. Hence, it might be assumed that infection of seed potatoes, favoured by late-blight-conducive weather in 1980, had been caused by metalaxyl-sensitive strains. Evidence that seed potatoes could also carry metalaxyl-resistant strains was obtained in two cases. It might explain their early occurrence in fields located in areas without a history of metalaxyl resistance in 1980 and the rapid build-up of a resistant population in a number of metalaxyl-treated fields.Development of resistance in potato fields, which were under heavy disease pressure after spraying with a mixture of metalaxyl and mancozeb, could not be proven definitely. In one experimental field the seed tubers very likely carried metalaxyl-resistant strains, which initiated an epidemic, and in a second field the influx of resistant strains from elsewhere could not be completely ruled out. In the latter field spraying the mixture at a two-week interval could not effectively control the disease. In this field a considerable degree of tuber infection by metalaxyl-resistant strains was noticed.No correlation existed between the behaviour of a particular strain towards metalaxyl and the genes for virulence present. Among a total of 79 isolates, the race of which has been identified, 23 different races were found. Race 1.3.4.7.10.11 was most frequently found, followed by race 1.3.4.7.11. Among 37 resistant isolates 10 different races could be identified.Samenvatting Gedurende de zomer en najaar van 1981 werden 222 veldisolaten vanPhytophthora infestans met behulp van een drijftoets getoetst op resistentie tegen metalaxyl. Per perceel werd meestal één isolaat, hetzij afkomstig van een door de aardappelziekte aangetast blad, hetzij van een zieke knol, getoetst.Eén en veertig isolaten bleken resistent te zijn. Van deze 41 waren er 35 afkomstig uit West Brabant, de Hoekse Waard en Oost Brabant/Noord Limburg, waar ongeveer 15% van het totale aardappelareaal in Nederland is gelegen. Daarnaast werden uit deze gebieden 29 gevoelige isolaten verkregen. Van de bemonsterde percelen uit de drie genoemde gebieden was 29% één- of tweemaal met metalaxyl behandeld, meestal in combinatie met andere middelen. Uit 78% van de aldus behandelde percelen werd een resistant isolaat verkregen. In de genoemde gebieden werden in 1980 alleen in Oost-Brabant/Noord Limburg problemen ondervonden van metalaxylresistentie.In percelen in overige gedeelten van Nederland, waar in 1980 algemeen metalaxylresistentie werd waargenomen, werden in totaal slechts zes metalaxyl-resistente en 152 gevoelige isolaten aangetroffen. Geen enkel van de met metalaxyl bespoten percelen (9% van het aantal bemonsterde percelen) leverde hier een resistent isolaat op. Uit een viertal aardappelafvalhopen in deze gebieden waarop de aardappelziekte voorkwam, werden metalaxyl-resistente stammen verkregen en twee ervan hadden waarschijnlijk een naburig perceel besmet.De resultaten van het onderzoek en de waarnemingen in de percelen wijzen erop dat de vroege en hevige epidemie van de aardappelziekte in 1981 is veroorzaakt door besmet pootgoed waaruit secundair zieke planten zijn ontstaan. Daarnaast werd het uitbreken van de epidemie vooral begunstig door de voorPhytophthora gunstige weersomstandigheden gedurende de periode eind mei tot half juni en het feit dat de eerste bespuiting te laat werd uitgevoerd, hetzij door overmacht, hetzij door het te traag reageren op de waarschuwingen via de radio.In 1980 hebben voornamelijk metalaxyl-gevoelige stammen het pootgoed kunnen besmetten, hetgeen verklaarbaar is uit het feit dat in dat jaar de problemen met metalaxylresistentie pas werden waargenomen nadat het loof van het pootgoed was vernietigd. In een tweetal gevallen zijn evenwel aanwijzingen verkregen dat pootgoed ook besmet kon zijn met resistente stammen. Een dergelijke besmetting is waarschijnlijk ook de verklaring voor het op grote schaal voorkomen van resistente stammen in West Brabant en de Hoekse Waard na een eenmalige toepassing van metalaxyl.In een tweetal proefvelden, waarvan er één was gelegen in Zuid-Flevoland en het andere te Heelsum, is het ontstaan van een resistante populatie bestudeerd bij een twee-wekelijkse toepassing van een mengsel van metalaxyl en mancozeb. Pootgoed, gebruikt in het op praktijkschaal uitgevoerde experiment in Zuid-Flevoland, bleek waarschijnlijk besmet te zijn met metalaxyl-resistente stammen, zoals op 1 juli werd vastgesteld in een onbehandeld gedeelte van het perceel. Op het behandelde gedeelte bleek het mengsel de ontwikkeling van de ziekte aanzienlijk te vertragen; evenwel werd na 16 juli een wekelijkse bespuiting met een maneb/fentin acetaat-bevattend produkt uitgevoerd voor een zo goed mogelijk ziektebestrijding.Op het in Heelsum gelegen proefveld werd op 5 augustus de ziekte het eerst waargenomen in het behandelde gedeelte, nadat de planten in het onbehandelde gedeelte, ten gevolgen van een doelbewuste inoculatie met gevoelige stammen op een naast gelegen aardappel-selectieveld, reeds voor meer dan 50% waren aangetast. Uit aangetaste bladeren van het behandelde gedeelte konden metalaxyl-resistente stammen worden geïsoleerd. In de loop van augustus bleek het metalaxyl/mancozeb-mengsel niet in staat verdere uitbreiding van de ziekte tegen te gaan en trad knolinfectie op. Begin september werden uitsluitend resistente stammen aangetroffen.Geen enkel verband kon worden vastgesteld tussen het optreden van metalaxyl-resistentie en het voorkomen van een bepaald fysio van de schimmel. Op een totaal van 79 isolaten konden 23 verschillende fysio's worden geïdentificeerd. Het fysio 1.3.4.7.10.11 werd de meeste keren gevonden, gevolgd door fysio 1.3.4.7.11. Tien verschillende fysio's werden aangetroffen onder de 37 getoetste metalaxyl-resistente isolaten.     

福建省部分马铃薯产区晚疫病菌群体结构研究

为明确福建省部分马铃薯产区晚疫病菌群体结构,2017年-2019年在龙海市、福安市、霞浦县共分离获得96株马铃薯晚疫病菌。采用对峙培养法、鉴别寄主法和PCR-RFLP法对这些菌株的交配型、生理小种及线粒体DNA (mtDNA)单倍型进行分析。交配型测定结果显示,除了福建省福安市有5株(5.21%)为A1交配型外,其余91株(94.79%)均为自育型,未发现A2交配型及A1A2型菌株。从96个菌株中检测出16个生理小种类型,龙海市和福安市的优势生理小种均是可克服11个显性抗病单基因的1.2.3.4.5.6.7.8.9.10.11,霞浦县的优势生理小种为1.2.3.4.5.6.7.8.10。供试菌株均至少含有6个毒性基因。mtDNA单倍型共检测出3种类型,其中55个菌株(龙海市22株、福安市8株、霞浦县25株)为Ⅰa型,占57.29%,32个菌株(龙海市2株、福安市25株、霞浦县5株)为Ⅱa型,占33.33%,9个菌株(福安市7株、霞浦县2株)为Ⅱb型,占9.37%。研究结果表明,福建省马铃薯晚疫病菌群体遗传多样性日趋复杂。     

Phenotypic and genotypic diversity of Phytophthora infestans populations in Scotland (1995–97)

In a survey of Scottish potato late blight ( Phytophthora infestans ) populations from 1995 to 1997, nearly 500 isolates were collected from over 80 disease outbreaks in commercial potato crops and gardens/allotments. The isolates were characterized by mating type, resistance to the fungicide metalaxyl and almost 300 were examined by DNA-based AFLP fingerprinting. These data were examined alongside cropping details to determine the population structure in the context of existing disease management strategies. A1 and A2 mating type isolates were present in both commercial potato crops and gardens or allotments although they coexisted more frequently in the latter sites. One-fifth of the isolates collected were of the A2 mating type and the frequency was similar over the 3 years and amongst sites. In 1995 the proportions of isolates that were sensitive and resistant to metalaxyl were equal (∼40%) but, over the following 2 years, the frequency of resistant isolates decreased and that of intermediate isolates increased. The mating type response to metalaxyl differed markedly, with 52% of A1 and only 5% of A2 isolates being resistant. Considerable molecular diversity was observed, with over half of the isolates having unique AFLP patterns. Analysis of the molecular and phenotypic data revealed a broad clustering of the population into three groups. Many factors point to an A2 population restricted by its sensitivity to phenylamides. The majority of the A2 isolates were found in a single AFLP group, but the presence of mixed mating type samples, an increasing frequency of isolates of intermediate metalaxyl resistance and the extent of the AFLP diversity suggest occasional sexual recombination, and thus gene flow, between groups.     

Variations in the Phytophthora infestans Population in Nepal as Revealed by Nuclear and Mitochondrial DNA Polymorphisms

ABSTRACT Phytophthora infestans isolates collected from potato and tomato crops from various parts of Nepal during the 1999 and 2000 crop seasons were characterized for nuclear and mitochondrial DNA polymorphisms using restriction fragment length polymorphism markers. The nuclear DNA probe RG57 detected 11 multilocus genotypes among 280 isolates. Three genotypes were detected 21 times or more, constituting 94% of the total population, whereas frequencies of other genotypes ranged from 0.004 to 0.014. The overall genotypic diversity as estimated by the Gleason index was 1.78. Most of the overall diversity was present at the highest level (i.e., interregional, 46%), indicating limited gene flow among regions. Cluster analysis of multilocus genotypes derived from RG57 and mating type data for Nepalese isolates and representative isolates worldwide showed Nepalese isolates grouping into four clusters. Characterization of 67 isolates for mitochondrial DNA polymorphisms revealed the presence of two mt-haplotypes, Ia and Ib with the proportions of 0.88 and 0.12, respectively. Polymorphisms in nuclear and mitochondrial DNA revealed a moderate level of diversity in this population. Genotype NP3 had an identical RG57 fingerprint to US1 and had mt-haplotype Ib, confirming the presence of an old population in Nepal. Most of the genotypes had a different RG57 fingerprint than that of US1 and mt-haplotype Ia, the common characteristics of new populations. The presence of a new population at high proportions in Nepal was consistent with the global trend of mt-haplotype distribution, and suggests the displacement of old populations. This study indicates at least three possible introductions of P. infestans to Nepal.     

Genetic Structure of the Population of Phytophthora infestans Attacking Solanum ochranthum in the Highlands of Ecuador

Thirty-nine isolates of Phytophthora infestans were collected from the wild host Solanum ochranthum in the highland tropics of Ecuador and characterized with a set of phenotypic and molecular markers (mating type, metalaxyl sensitivity, the allozyme loci Gpi, and Pep, mitochondrial DNA haplotype, RFLP, and SSR), as well as for pathogenicity on various hosts. Three groups of isolates (A, B, and C) were identified based on their multilocus genotypes and variable abilities to cause disease on different hosts. Group A had a combination of alleles for the Gpi (86/100), Pep (96/100) and mtDNA (Ia) loci, as well as an RFLP fingerprint, that have not been reported for P. infestans in Ecuador, or elsewhere. Group B shares many marker characteristics with the US-1 lineage described in Ecuador on tomato, pear melon (S. muricatum), and S. caripense, but has SSR alleles not present in typical US-1 isolates. Group C for all markers tested is identical to the EC-1 lineage described on cultivated and wild potatoes in Ecuador. All isolates from S. ochranthum were able to re-infect their host of origin in the detached leaf assay; however, we did not draw clear conclusions as to the relative aggressiveness of the three groups on this host. Isolates of group A were the most specialized and were generally non-pathogenic or weakly pathogenic on all hosts other than S. ochranthum. Groups B and C infected tuber-bearing hosts, including the cultivated potato but were generally non-pathogenic on other non-tuber bearing hosts. Solanum ochranthum was infected by isolates coming from tuber-bearing Solanum hosts (i.e., the EC-1 lineage of P. infestans) and some US-1 isolates from non-tuber bearing hosts. Thus, in nature this species might be a potential reservoir of inoculum of different pathogen populations able to infect the cultivated hosts potato, tomato and pear melon (S.␣muricatum). Unlike potato and tomato in Ecuador, each of which is primarily attacked by a highly specialized pathogen population, S. ochranthum appears to harbour at least three pathogen groups of␣different genetic make-up. The unresolved issue of potential host specificity in isolates found on S.␣ochranthum could complicate efforts to use this species in tomato improvement.     

Population dynamics of metalaxyl-sensitive and metalaxyl-resistant isolates of Phytophthora infestans in untreated crops of potato

Each of six pairs of metalaxyl-sensitive (MS) and metalaxyl-resistant (MR) field isolates of Phytophthora infestans was inoculated as a mixture of 90% MS sporangia with 10% MR sporangia onto fungicide-free potato plants (cv. Alpha) in six walk-in plastic tunnels in each of 2 years. In both experiments, late blight killed the crops in 26-31 days. In all tunnels, the frequency of MR sporangia increased during the logarithmic phase of the epidemic to 70-85% of the population. Later, however, the frequency of M R sporangia decreased to 7-38% in six tunnels but continued to increase to 94-100% in the other six. The increased frequency of MR during the logarithmic phase was attributed to the shorter latent period and larger lesion size of MR compared to MS isolates and to the unlimited availability of uninfected host tissue. The later decrease in the frequency of MR in six tunnels was attributed to the lower sporulation capacity and the shorter infectious period of MR compared to MS isolates, and to the limitation of uninfected host tissue. The data showed that the population dynamics of P. infestans was dependent not only on fitness components of isolates, but also on the availability of uninfected host tissue.