Substrate binding by blasticidin S deaminase,an aminohydrolase for novel 4-aminopyrimidine nucleosides

The substrate specificity of blasticidin S deaminase (E.C. 3.5.4.23), purified from Aspergillus terreus, has been studied in detail. The enzyme was found to catalyze the hydrolytic deamination of cytosine nucleus in blasticidin S and its derivatives, while cytosine, cytidine, cytidine monophosphate, adenosine, and guanosine were not regarded as substrates. The structural requirements of compounds for binding by the enzyme were evaluated by the nature of inhibition and inhibitor constants; deaminohydroxyblasticidin S, the reaction product, and its derivatives inhibited the enzymatic aminohydrolysis of blasticidin S competitively. The K_i for deaminohydroxyblasticidin S was determined to be 2.3 × 10⁻⁵ M, which is close to the K_m for blasticidin S (2.1 × 10⁻⁵ M). The binding affinity of derivatives to the enzyme, −ΔG_bind, was calculated on the basis of K_i values, and further the partial binding affinities, −Δg, for several moieties or atomic groups in blasticidin S were deduced from the −ΔG_bind values. The results showed that the enzyme involves a specific binding site with multiple points corresponding to the carboxyl group of cytosinine moiety, the amide group, and the β-amino and guanidino groups of blastidic acid moiety in blasticidin S molecule; these facts are strongly indicative of the enzyme to be a new aminohydrolase for novel nucleosides such as blasticidin S.     

Metabolism of permethrin isomers in American cockroach adults,house fly adults,and cabbage looper larvae

Forty-two insect metabolites of [1RS,trans]-and [1RS,cis]-permethrin are tentatively identified in studies with Periplaneta americana adults, Musca domestica adults, and Trichoplusia ni larvae involving administration of ¹⁴C preparations labeled in either the alcohol or acid moieties. The less-insecticidal trans isomer is generally metabolized more rapidly than the more-insecticidal cis isomer, particularly in cabbage looper larvae, and metabolites retaining the ester linkage appear in larger amount with cis-permethrin. Although the dichlorovinyl group effectively blocks oxidation in the acid side chain, the permethrin isomers are metabolized by hydrolysis and hydroxylation at the geminal-dimethyl group (either trans- or cis-methyl substituent) and the phenoxybenzyl group (predominantly at the 4′-position in all species but also at the 6-position in house flies). The alcoholic and phenolic metabolites are excreted as glucosides, and the carboxylic acids are excreted as glucosides and amino conjugates (glycine, glutamic acid, glutamine, and serine) with considerable species variation in the preferred conjugating moiety.     

Metabolism of trifluralin,profluralin, and fluchloralin by rat liver microsomes

Three structurally related [¹⁴C]dinitroaniline herbicides, trifluralin, profluralin, and fluchloralin, were extensively metabolized in vitro by both normal and phenobarbital-induced rat liver microsomes. Identification of the metabolites in the ethyl acetate extracts indicated that aliphatic hydroxylation, N-dealkylation, reduction of a nitro group, and cyclization were the predominant metabolic routes for these herbicides in vitro. Of particular interest was the formation of a benzimidazole metabolite.     

Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology

During nematode surveys in southern Spain and Italy 14 populations of Xiphinema species tentatively identified as Xiphinema americanum-group were detected. Morphological and morphometrical studies identified three new species and six known Xiphinema americanum-group species, viz.: Xiphinema parabrevicolle n. sp., Xiphinema parapachydermum n. sp., Xiphinema paratenuicutis n. sp., Xiphinema duriense, Xiphinema incertum, Xiphinema opisthohysterum, Xiphinema pachtaicum, Xiphinema rivesi, and Xiphinema santos. The Xiphinema americanum-group is the most difficult Xiphinema species group for diagnosis since the morphology is very conservative and morphometric characters often overlap. This group includes vectors of several important plant pathogenic viruses that cause significant damage to a wide range of agricultural crops. Molecular characterisation of these species using D2-D3 expansion regions of 28S rRNA, 18S rRNA, ITS1-rRNA and the protein-coding mitochondrial gene, cytochrome oxidase c subunit 1 was carried out and maximum likelihood and Bayesian inference analysis were used to reconstruct phylogenetic relationships among these species and with other Xiphinema americanum-group species.     

The attraction of cerambycids and other xylophagous beetles, potential vectors of Bursaphelenchus xylophilus, to semio-chemicals in Slovenia

The attractiveness of different semio-chemicals to potential vectors of the phytoparasitic nematode Bursaphelenchus xylophilus was investigated in conifer forests in Slovenia. From 2007 to 2009, the presence of xylophagous beetles in Pinus nigra, P. sylvestris, P. halepensis, Picea abies and Abies alba stands was assessed at eight locations. Insects were collected at 1-month intervals during the growing season using four cross vane traps per location with a collecting container with propylene glycol and attractants (ethanol+??-pinene, Pheroprax? and Gallowit?). The trapped insects represented 24 families of the order Coleoptera, and we identified 94 species. The most numerous group was the weevil subfamily Scolytinae (76.55% of all insects collected), followed by the family Cerambycidae (8.12%), and the weevil subfamily Curculioninae (1.67%). With regard to species number, the most frequent wood-borers were Cerambycidae (24 taxa), Scolytinae (12 species) and Buprestidae (8 species). The most abundant species was Spondylis buprestoides, followed by Arhopalus rusticus, Monochamus galloprovincialis and Arhopalus ferus. At all locations, the largest catch of Cerambycidae occurred in July. The most effective attractant was ethanol+??-pinene, followed by Gallowit?; the least effective attractant was Pheroprax?. Among Monochamus species, M. galloprovincialis represented 17.54%, M. sutor 0.09% and M. sartor 0.04% of the long-horned beetles collected. Monochamus individuals were most numerous in the P. nigra stand and were attracted in the greatest numbers by Gallowit?, followed by ethanol+??-pinene. The cerambycid catch was highly correlated with the catch of non-target bark beetle predators (Cleridae, Staphylinidae, Histeridae, Trogositidae, Nitidulidae, Rhizophagidae) in the traps.     

Two new species,Phytophthora nagaii sp. nov. and P. fragariaefolia sp. nov., causing serious diseases on rose and strawberry plants,respectively, in Japan

A new disease of rose was noticed in Chiba Prefecture of Japan in 1968, and the pathogen was initially identified as Phytophthora megasperma based on morphological characteristics. Similar Phytophthora isolates have since been collected from rose plants in Chiba, Kanagawa, and Shizuoka Prefectures. In 2005, several Phytophthora isolates were recovered from crowns of strawberry plants in Hokkaido Prefecture. These were considered to be members of a new species. In this study, we re-examined all these isolates using morphological and physiological studies and a multilocus phylogenetic analysis. The rose and strawberry isolates were mostly similar morphologically and physiologically, with some exceptions. The rose isolates differed significantly from P. megasperma sensu stricto and other related Phytophthora species. The rose and strawberry isolates had external proliferation of sporangia, characteristic funnel-shaped oogonia, predominantly paragynous antheridia, and fast growth rates of 10.5 mm/24 h at an optimum temperature of 28 °C. In the multilocus phylogenetic tree constructed using sequences from the rDNA ITS regions, rDNA LSU, and the translation elongation factor 1-α, β-tubulin and coxI genes, they formed a distinct monophyletic group in clade 7 with strong bootstrap support. The rose and strawberry isolates separated into two distinct groups. The results indicate that the rose and strawberry isolates constitute two separate species, designated here as Phytophthora nagaii and P. fragariaefolia.     

Genetic diversity analysis of Acidovorax citrulli in China

Acidovorax citrulli has become quite common in China. A collection of 118 strains of A. citrulli was made from throughout China and other countries to determine their genetic relatedness. Strains were identified as A. citrulli by pathogenicity, phenotypic characterization, and PCR. Genetic diversity was determined using pulsed field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). PFGE electrophoresis resulted in nine genotypes, which could be typed into two groups based on host; group 1 included strains mainly from melon and group 2 included strains mainly from watermelon. MLST analysis resulted in 73 sequence types (ST) among the 118 A. citrulli strains. All A. citrulli strains were typed into three groups: group 1 with 82 strains (including type strain Fc247), group 2 with 35 strains and group 3 a singleton (Fc380). Similar to PFGE results, group 1 included strains mainly from melon and group 2 included strains mainly from watermelon. The difference was the 10 watermelon strains (pslbtw1-3, 5–11) from Beijing grouped with melon strains of group 1 based on MLST, suggesting that these 10 watermelon strains had a close relationship with melon. Our study indicated that there was genetic differentiation among A. citrulli strains between watermelon and melon. Also, our study was the first attempt to compare PFGE and MLST on analyzing genetic diversity of A. citrulli strains and proved MLST could better distinguish A. citrulli strains.     

Metabolism of the 1,2,4-triazolylmethane fungicides,triadimefon, triadimenol,and diclobutrazol,by Aspergillus niger (van Tiegh.)

Metabolism of the triazolylmethane fungicides triadimefon, triadimenol, and diclobutrazol by Aspergillus niger was studied using a replacement culture technique and ¹⁴C substrates. Components of metabolite mixtures were characterized by TLC, GLC, radio-GC, and GC-MS analyses of the free materials and their trifluoroacetate and trimethylsilyl ether derivatives. The three compounds underwent a common metabolic change involving oxidation of C(CH₃)₃ to C(CH₃)₂CH₂OH. In this work the isopropyl analog of triadimefon, previously reported as a metabolite, was an artifact and resulted from nonbiological oxidation of the corresponding primary alcohol. The fungus also reduced triadimefon to triadimenol, giving a mixture of 1R2S, 1S2R and 1R2R, 1S2S diastereoisomers. The less fungitoxic 1R2S, 1S2R triadimenol predominated, so that this conversion may be directly associated with the relative insensitivity of A. niger to triadimefon. Implications of oxidative and reductive metabolism of these fungicides are suggested with particular reference to the differing fungitoxicities of diastereoisomers and enantiomers.     

Phytotoxin produced by the netted scab pathogen, <Emphasis Type="Italic">Streptomyces turgidiscabies</Emphasis> strain 65, isolated in Sweden

Streptomyces spp. are a highly diverse group of bacteria most of which are soil-inhabiting saprophytes. A few are plant pathogens that produce a family of phytotoxins called thaxtomins and cause significant economic losses, e.g., by reducing the marketability of potato tubers (Solanum tuberosum). In northern Europe, S. scabies, S. turgidiscabies and S. europaeiscabiei are the most common plant pathogenic species. In this study, a Streptomyces strain isolated from a netted scab lesion on a tuber of potato cv. Bintje in northern Sweden was identified as S. turgidiscabies but was found to differ in the genomic region carrying genes required for thaxtomin biosynthesis. Our results showed that the strain did not produce thaxtomin but rather phytotoxin fridamycin E, which is an anthraquinone novel to plant pathogenic Streptomyces spp. Fridamycin E was shown to reduce or inhibit sprouting of potato microtubers in vitro. While fridamycin E is known to have antibiotic activity against Gram-positive bacteria, the inhibitory activity of fridamycin E on plant growth is a novel finding.     

Bacterial leaf spot and blight of crucifer plants (Brassicaceae) caused by Pseudomonas syringae pv. maculicola and P. cannabina pv. alisalensis

Bacterial leaf spot and blight diseases caused by Pseudomonas syringae pv. maculicola (Psm) and P. cannabina pv. alisalensis (Pcal) are becoming a significant concern for producers of crucifer crops worldwide. Since Psm was first described in 1911, many have reported on its diverse phenotypic, genetic and pathogenic characteristics. Japanese isolates of Psm are also heterogeneous and differ in their host preferences. Pcal was first described in 2002 and has quickly spread globally. Recent work demonstrated that some isolates that had been identified as Psm are actually Pcal. Pcal was also shown to be split into two groups, A and B, based on bacteriological properties, genetic traits and pathogenicity. Group A of Pcal consists mostly of isolates from Japanese radish and radish, isolated before 1990s, that are more aggressive on radish leaves but less aggressive on other Brassica plants compared with group B. Group B of Pcal consists of recent isolates from various crucifer plants including the pathotype of Pcal. In this review, we suggest that group A of Pcal may have existed since the 1950s and survived as a relatively minor pathogen on radish or Japanese radish, whereas group B emerged in the late 1990s, causing global epidemics because of its stronger virulence on various Brassica crops. We also suggest that emergence of a new group of a pathogenic bacterium may cause a re-emergence or new epidemics of a disease that previously was of minor importance.     

New analogs of pochonicine,a potent β-N-acetylglucosaminidase inhibitor from fungus Pochonia suchlasporia var. suchlasporia TAMA 87

Three novel analogs of pochonicine (1) were isolated from a solid fermentation culture of the fungal strain Pochonia suchlasporia var. suchlasporia TAMA 87, and their structures were elucidated as 7-deoxypochonicine (2), 6-deoxypochonicine (3), and 6,7-dideoxypochonicine (4). These analogs were found to possess the same stereochemistry as pochonicine. Comparison of β-N-acetylglucosaminidase (GlcNAcase) inhibitory activity between these analogs and pochonicine suggested that the C-6 hydroxy group of pochonicine was essential to its potent GlcNAcase inhibitory activity and that the C-7 hydroxy group also contributed to the activity, but to a lesser extent than the C-6 hydroxy group.     

Fusarium temperatum, a mycotoxin-producing pathogen of maize

In a recent study, a population of Fusarium strains isolated from maize in Belgium was described as a new species, F. temperatum, that is morphologically similar and phylogenetically closely related to F. subglutinans, a species in the American clade of the Gibberella fujikuroi species complex. In fields, the F. temperatum:F. subglutinans ratio was very high, suggesting that F. temperatum outcompetes its sister species F. subglutinans. This raised the question whether this novel species contributes to the final rot symptoms observed on maize plants at harvest, as well as to the potential mycotoxin contamination. Results of the pathogenicity tests by soil and toothpick inoculation demonstrate the ability of F. temperatum to cause seedling malformation and stalk rot under greenhouse conditions. Screening of 15 Fusarium mycotoxins showed the ability of F. temperatum to produce moniliformin, beauvericin, enniatins and fumonisin B₁. The results indicate that F. temperatum can produce mycotoxins and cause maize diseases and, therefore, poses a potential risk to maize production and to the safety of human food and animal feed.     

The metabolism of chlorotoluron in the rat

The metabolic fate of ¹⁴C-labeled chlorotoluron, i.e., 1-(3-chloro-4-methyl[⁴C]-phenyl)-3,3-dimethyl urea, was followed in rats. After a single oral dose the radioactivity was preferably excreted with the urine. Nine of the eleven urinary metabolites isolated, were identified by spectroscopic and derivatization techniques, whereas the structure of the remaining two metabolites was only partially elucidated. N-Demethylation and stepwise oxidation of the ring methyl group to hydroxymethyl and carboxyl derivatives were found as the major metabolic mechanisms. Both mechanisms proceeded simultaneously so that the isolated metabolites showed all combinations of N-demethylation and ring methyl group oxidation in their structures. One of these metabolites was an N-formyl derivative, being probably an intermediate product of demethylation. In the urine of rats fed doses of [¹⁴C]chlorotoluron higher than 50 mg/kg three additional metabolites with different degrees of N-dealkylation were found, the ring methyl group of which was transformed to a methylthio methyl group. The metabolites identified in the faeces were of the same type as those found in the urine. Based on the structures of the metabolites elucidated, a metabolic pathway of chlorotoluron in the rat is presented.     

Activation of an O-ethyl S-n-propyl phosphorothiolate,TIA-230, in the central nerve of Spodoptera larvae

TIA-230, O-[1-(4-chlorophenyl)-4-pyrazolyl] O-ethyl S-propyl phosphorothiolate, showed strong insecticidal activity against Spodoptera larvae, in spite of its weak in vitro anti-AChE activity. Head AChE of Spodoptera was, however, inhibited with the progress of TIA-230 intoxication. When the isolated central nerve cord was incubated with TIA-230, AChE in the tissue was strongly inhibited even by concentration (10^?5M) lower than in vitro I₅₀ against AChE (10^?4M). The frequency of spontaneous firing of the nerve cord was increased by treatment of TIA-230 at low concentrations (10^?6–10^?5M) after a latent time of several minutes. The firing was increased by fenitroxon, but without the latent time. The length of the latent time agreed well with the time necessary for rising the inhibition of nerve cord AChE by TIA-230. AChE inhibition of TIA-230 in the nerve cord was reduced by the treatment of piperonyl butoxide, an inhibitor of mixed-function oxidases. From these results, TIA-230 was regarded as being activated oxidatively in the nerve cord to inhibit AChE. Profenofos was also activated in the nerve cord. It was concluded, therefore, that O-ethyl S-n-propyl phosphorothiolate insecticides were activated in the central nerve of the insect.     

Hydrolytic activation versus oxidative degradation of Assert herbicide,an imidazolinone aryl-carboxylate,in susceptible wild oat versus tolerant corn and wheat

Assert herbicide, a mixture of the methyl esters of meta and para 2-imidazolinone toluate, is an imidazolinone aryl-carboxylate herbicide with selectivity against wild oat in corn and wheat. The corresponding free carboxylic acids are also herbicidal but show no selectivity. Metabolism of individual isomers of ¹⁴C-labeled Assert herbicide in these three species during the first 2 weeks after foliar treatment shows that hydrolytic activation of the esters to yield the free acids occurs only in wild oat, with the more herbicidal meta isomer producing a two- to threefold greater concentration of the free acid than the para isomer. Detoxication in corn and wheat occurs by rapid oxidation of the aryl methyl group to the corresponding alcohol followed by glucose conjugation. The imidazolinone aryl-carboxylates may owe their activity to the structural analogy of the imidazolinone substituent to branched chain amino acids such as valine, in the feedback inhibition of acetolactate synthase. The wide range of selectivity of this herbicide series is probably a function of the balance of oxidative and hydrolytic metabolism at substituents other than the imidazolinone ring.     

Interaction of perfluidone with mitochondrial,thylakoid, and liposome membranes

Perfluidone (1,1,1-trifluoro-N-[2-methyl-4-(phenylsulfonyl)phenyl]methanesulfonamide) was shown to interfere with phosphorylation and electron transport in isolated mung bean (Phaseolus aureus Roxb.) mitochondria. At low molar concentrations (<100 μM), perfluidone acted as an uncoupler of oxidative phosphorylation as evidenced by stimulation of state 4 respiration, induction of ATPase activity, and circumvention of oligomycin-inhibited state 3 respiration. At higher molar concentrations (>100 μM), perfluidone inhibited electron transport by acting on complexes I and II, and on the alternate (cyanide-insensitive) oxidase. In isolated spinach thylakoids (Spinacia oleracea L.), perfluidone also acted as an uncoupler, at low concentrations, as evidenced by stimulation of photoinduced electron transport with water as the reductant and methyl viologen and ferricyanide as oxidants, and from reduced dichlorophenolindophenol to methyl viologen. In addition, perfluidone inhibited the rate and magnitude of valinomycin-induced mitochondrial swelling in isotonic potassium chloride and potassium thiocyanate, and with thylakoids suspended in potassium thiocyanate at concentrations that inhibited ATP generation (<100 μM). Passive swelling in mitochondria was induced at higher concentrations. The permeability of lecithin liposomes to protons was also increased by perfluidone in a manner characteristic of uncouplers. The results obtained suggested that the partitioning of perfluidone perturbs the inner mitochondrial and thylakoid membranes. The perturbations increase the permeability of the membranes to protons and cations (at least potassium) and decrease membrane “fluidity.” As a consequence of the perturbations, the ATP-generating pathway in both mitochondria and chloroplasts is uncoupled and the structural organization of the electron transport components in mitochondria is disrupted, resulting in multisite inhibition of respiration. No evidence was obtained for a direct interaction between perfluidone and redox components of the electron transport pathways.     

Soil type, management history, and soil amendments influence the development of soil-borne (Rhizoctonia solani, Pythium ultimum) and air-borne (Phytophthora infestans, Hyaloperonospora parasitica) diseases

The impact of soil type, long-term soil management, and short-term fertility input strategies on the suppressiveness of soils against soil-borne (Ocimum basilicum – Rhizoctonia solani, Lepidium sativum – Pythium ultimum) as well as air-borne (Lycopersicon esculentum – Phytophthora infestans, Arabidopsis thaliana – Hyaloperonospora parasitica) diseases was studied. Soils from field trials established in five European sites with contrasting pedo-climatic conditions were examined. Sites included (i) a long-term management field trial comparing organic and conventional farming systems (DOK-trial, Therwil, Switzerland) (ii) a short-term fertility input field trial comparing mineral and organic matter fertilisation regimes (Bonn (BON), Germany) (iii) two short-term fertility input field trials (Stockbridge (STC) and Tadcaster (TAD), UK) comparing the impact of farmyard manure, composted farmyard manure, and chicken manure pellet amendements and (iv) soil from a site used as a reference (Reckenholz (REC), Switzerland). Soil type affected disease suppressiveness of the four pathosystems signficantly, indicating that soils can not only affect the development of soil-borne, but also the resistance of plants to air-borne diseases at relevant levels. Suppressiveness to soil- and air-borne diseases was shown to be affected by soil type, but also by long-term management as well as short-term fertility inputs.     

Quantitative detection of the root-lesion nematode, Pratylenchus penetrans, using qPCR

Pratylenchus penetrans is one of the most economically damaging plant-parasitic nematodes and is found on a wide variety of crops. Correct identification and quantification of this nematode are necessary for providing advice to farmers, but are not easily obtained with the traditional way of microscopic observation. We developed a qPCR assay to detect and quantify P. penetrans in a short but accurate manner. A qPCR primer set, including two primers and a TaqMan probe, was designed based on the sequence of the β-1,4-endoglucanase gene. The assay was optimized by using the primers in a qPCR assay with SYBR green I dye and setting the qPCR program to different annealing temperatures ranging from 60 °C to 64 °C. Based on the Ct-values, we retained the program with an annealing temperature of 63 °C. The assay with the probe was very sensitive as it was able to detect a single individual of P. penetrans, even when mixed with up to 80 individuals of P. thornei. The specificity of the reaction was confirmed by the lack of amplification of DNA from 28 populations of 18 other Pratylenchus species and from plant-parasitic nematodes from nine other genera. DNA from 21 different isolates from P. penetrans was amplified. DNA extraction from 80 individuals and quantification by qPCR was repeated four times; Ct-values showed consistent results (Ct?=?24.4?±?0.4). A dilution series from DNA of P. penetrans resulted in a standard curve showing a highly significant linearity between the Ct-values and the dilution rates (R²?=?0.99; slope?=??3.23; E?=?104 %). The tests showed a high correlation between the real numbers of nematodes and the numbers detected by the qPCR. The developed qPCR assay provides a sensitive means for the rapid detection and reliable quantification of individuals of this pest. This method does not require expertise in nematode taxonomy and morphology, and can be used as a rapid diagnostic tool in research, as well as in diagnostic labs and extension services advising farmers for pest management.     

Characterization of multiple glutathione transferases from the house fly, Musca domestica (L)

Glutathione transferases have been purified to a high degree of homogeneity from three strains of house fly by a procedure involving affinity chromatography on glutathione-sulfobromophthalein conjugate immobilized on Sepharose 4B, followed by preparative isoelectrofocusing. The affinity chromatography yielded purifications of between about 10- and 100-fold, depending on the strain and the substrate with which activity was measured. Each strain was shown to possess several proteins with glutathione S-transferase activity which fell into two clearly defined groups. The first group, of relatively low isoelectric point, showed activity with CDNB but little with DCNB, p-nitrobenzylchloride, or 1,2-epoxy-3-(p-nitrophenoxy)propane, whereas the second group, of higher isoelectric points, showed substantial activity with all substrates tested. Studies on the subunit structure of these enzymes demonstrated the existence of three different sized subunits of M_r 20,000, 22,000, and 23,500. From the experimental evidence recorded here, the existence of at least three functionally different glutathione transferases is inferred.