Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding

The ribosome of Thermus thermophilus was cocrystallized with initiator transfer RNA (tRNA) and a structured messenger RNA (mRNA) carrying a translational operator. The path of the mRNA was defined at 5.5 angstroms resolution by comparing it with either the crystal structure of the same ribosomal complex lacking mRNA or with an unstructured mRNA. A precise ribosomal environment positions the operator stem-loop structure perpendicular to the surface of the ribosome on the platform of the 30S subunit. The binding of the operator and of the initiator tRNA occurs on the ribosome with an unoccupied tRNA exit site, which is expected for an initiation complex. The positioning of the regulatory domain of the operator relative to the ribosome elucidates the molecular mechanism by which the bound repressor switches off translation. Our data suggest a general way in which mRNA control elements must be placed on the ribosome to perform their regulatory task.     

Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray

A central challenge of genomics is to detect, simply and inexpensively, all differences in sequence among the genomes of individual members of a species. We devised a system to detect all single-nucleotide differences between genomes with the use of data from a single hybridization to a whole-genome DNA microarray. This allowed us to detect a variety of spontaneous single-base pair substitutions, insertions, and deletions, and most (>90%) of the approximately 30,000 known single-nucleotide polymorphisms between two Saccharomyces cerevisiae strains. We applied this approach to elucidate the genetic basis of phenotypic variants and to identify the small number of single-base pair changes accumulated during experimental evolution of yeast.     

The sun and nearby stars: microwave observations at high resolution

High-resolution microwave observations are providing new insights into the nature of active regions and eruptions on the sun and nearby stars. The strength, evolution, and structure of magnetic fields in coronal loops can be determined by multiple-wavelength observations with the Very Large Array. Flare models can be tested with Very Large Array snapshot maps, which have angular resolutions of better than 1 second of arc in time periods as short as 10 seconds. Magnetic changes that precede solar eruptions on time scales of tens of minutes involve primarily emerging coronal loops and the interactions of two or more loops. Magnetic reconnection at the interface of two closed loops may accelerate electrons and trigger the release of microwave energy in the coronal parts of the magnetic loops. Nearby main-sequence stars of late spectral type emit slowly varying microwave radiation and stellar microwave bursts that show striking similarities to those of the sun.     

Using high spatial resolution satellite imagery for mapping powdery mildew at a regional scale

Efficient crop protection management requires timely detection of diseases. The rapid development of remote sensing technology provides a possibility of spatial continuous monitoring of crop diseases over a large area. In this study, to monitor powdery mildew in winter wheat in an area where a severe disease infection occurred, the capability of high resolution (6 m) multi-spectral satellite imagery, SPOT-6, in disease mapping was assessed and validated using field survey data. Based on a rigorous feature selection process, five disease sensitive spectral features: green band, red band, normalized difference vegetation index, triangular vegetation index, and atmospherically-resistant vegetation index were selected from a group of candidate spectral features/variables. A spectral correction was processed on the selected features to eliminate possible baseline effect across different regions. Then, the disease mapping method was developed based on a spectral angle mapping technique. By validating against a set of field survey data, an overall mapping accuracy of 78 % and kappa coefficient of 0.55 were achieved. Such a moderate but practically acceptable accuracy suggests that the high resolution multi-spectral satellite image data would be of great potential in crop disease monitoring.     

The DNA binding arm of lambda repressor: critical contacts from a flexible region.

Segments of protein that do not adopt a well-ordered conformation in the absence of DNA can still contribute to site-specific recognition of DNA. The first six residues (NH2-Ser1-Thr2-Lys3-Lys4-Lys5-Pro6-) of phage lambda repressor are flexible but are important for site-specific binding. Low-temperature x-ray crystallography and codondirected saturation mutagenesis were used to study the role of this segment. All of the functional sequences have the form [X]1-[X]2-[Lys or Arg]3-[Lys]4-[Lys or Arg]5-[X]6. A high-resolution (1.8 angstrom) crystal structure shows that Lys3 and Lys4 each make multiple hydrogen bonds with guanines and that Lys5 interacts with the phosphate backbone. The symmetry of the complex breaks down near the center of the site, and these results suggest a revision in the traditional alignment of the six lambda operator sites.     

Inverse meta-modelling to estimate soil available water capacity at high spatial resolution across a farm

Geo-referenced information on crop production that is both spatially- and temporally-dense would be useful for management in precision agriculture (PA). Crop yield monitors provide spatially but not temporally dense information. Crop growth simulation modelling can provide temporal density, but traditionally fail on the spatial issue. The research described was motivated by the challenge of satisfying both the spatial and temporal data needs of PA. The methods presented depart from current crop modelling within PA by introducing meta-modelling in combination with inverse modelling to estimate site-specific soil properties. The soil properties are used to predict spatially- and temporally-dense crop yields. An inverse meta-model was derived from the agricultural production simulator (APSIM) using neural networks to estimate soil available water capacity (AWC) from available yield data. Maps of AWC with a resolution of 10 m were produced across a dryland grain farm in Australia. For certain years and fields, the estimates were useful for yield prediction with APSIM and multiple regression, whereas for others the results were disappointing. The estimates contain ‘implicit information’ about climate interactions with soil, crop and landscape that needs to be identified. Improvement of the meta-model with more AWC scenarios, more years of yield data, inclusion of additional variables and accounting for uncertainty are discussed. We concluded that it is worthwhile to pursue this approach as an efficient way of extracting soil physical information that exists within crop yield maps to create spatially- and temporally-dense datasets.     

Photon emission at molecular resolution induced by a scanning tunneling microscope

The tip-surface region of a scanning tunneling microscope (STM) emits light when the energy of the tunneling electrons is sufficient to excite luminescent processes. These processes provide access to dynamic aspects of the local electronic structure that are not directly amenable to conventional STM experiments. From monolayer films of carbon-60 fullerenes on gold(110) surfaces, intense emission is observed when the STM tip is placed above an individual molecule. The diameter of this emission spot associated with carbon-60 is approximately 4 angstroms. These results demonstrate the highest spatial resolution of light emission to date with a scanning probe technique.     

X-ray holograms at improved resolution: a study of zymogen granules

X-ray holography offers the possibility of three-dimensional microscopy with resolution higher than that of the light microscope and with contrast based on x-ray edges. In principle, the method is especially advantageous for biological samples if x-rays in the wavelength region between the carbon and oxygen K edges are used. However, until now the achieved resolution has not exceeded that of the light microscope because of the poor coherence properties of the x-ray sources and the low resolution of the detectors that were available. With a recently developed x-ray source based on an undulator on an electron storage ring, and high resolution x-ray resist, a hologram has been recorded at about 400-angstrom resolution. The experiment utilized x-rays with wavelengths of 24.7 angstroms and required a 1-hour exposure of the pancreatic zymogen granules under study.     

Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor

A high-resolution crystallographic analysis of the nitrogenase MoFe-protein reveals a previously unrecognized ligand coordinated to six iron atoms in the center of the catalytically essential FeMo-cofactor. The electron density for this ligand is masked in structures with resolutions lower than 1.55 angstroms, owing to Fourier series termination ripples from the surrounding iron and sulfur atoms in the cofactor. The central atom completes an approximate tetrahedral coordination for the six iron atoms, instead of the trigonal coordination proposed on the basis of lower resolution structures. The crystallographic refinement at 1.16 angstrom resolution is consistent with this newly detected component being a light element, most plausibly nitrogen. The presence of a nitrogen atom in the cofactor would have important implications for the mechanism of dinitrogen reduction by nitrogenase.     

Evolving genomic metaphors: a new look at the language of DNA

Recent genome-sequencing efforts have confirmed that traditional "good-citizen" genes (those that encode functional RNA and protein molecules of obvious benefit to the organism) constitute only a small fraction of the genomic populace in humans and other multicellular creatures. The rest of the DNA sequence includes an astonishing collection of noncoding regions, regulatory modules, deadbeat pseudogenes, legions of repetitive elements, and hosts of oft-shifty, self-interested nomads, renegades, and immigrants. To help visualize functional operations in such intracellular genomic societies and to better encapsulate the evolutionary origins of complex genomes, new and evocative metaphors may be both entertaining and research-stimulating.     

Delineation of vine parcels by segmentation of high resolution remote sensed images

Field delineation is an essential preliminary step for the design of management maps for grape production. In this paper, we propose a new algorithm for the segmentation of vine fields based on high-resolution remote sensed images. This algorithm takes into account the textural properties of vine images. It leads to the computation of a textural attribute on which a simple thresholding operation allows to discriminate between vine field and non-vine field pixels. The feasibility of the automatic delineation is illustrated on a range of vineyard images with various inter-row distances, grass covers, perspective distortions and side perturbations. In most cases it produces precise delineation of field borders while the parcel under consideration remains separate from the rest of the image.     

以新的质量观引导和深化高素质人才的培养

本论述了华中农业大学通过开展教育思想大讨论，在校内上下树立了适应时代和社会发展的新的人才质量观，从而加大了教学改革和建设力度，努力创新人才培养模式和教学管理运行机制，大大提高了高素质人才培养质量。     

Functional organization of primate visual cortex revealed by high resolution optical imaging

A high spatial resolution optical imaging system was developed to visualize cerebral cortical activity in vivo. This method is based on activity-dependent intrinsic signals and does not use voltage-sensitive dyes. Images of the living monkey striate (VI) and extrastriate (V2) visual cortex, taken during visual stimulation, were analyzed to yield maps of the distribution of cells with various functional properties. The cytochrome oxidase--rich blobs of V1 and the stripes of V2 were imaged in the living brain. In V2, no ocular dominance organization was seen, while regions of poor orientation tuning colocalized to every other cytochrome oxidase stripe. The orientation tuning of other regions of V2 appeared organized as modules that are larger and more uniform than those in V1.