Enzyme dynamics in contaminated paddy soils under different cropping patterns (NE Italy)

Purpose

Soil enzyme activities are sensitive indicators of soil quality reflecting effects of land management. This study aims to monitor the effects of four crop rotation systems (rice-rice-rice: R-R-R, soya-rice-rice: S-R-R, fallow-rice: F-R and pea-soya-rice: P-S-R) on the activities of six important soil enzymes involved in C, N, P, and S cycling and soil properties during rice growth.

Materials and methods

Four rice plots with different rotation systems were investigated before rice planting and during the phenological cycle in a paddy soil from the Veneto region, Italy; sampling of soils (0–15 cm) was carried out four times during growing season (three replicates). A total of 48 samples were air dried, for some chemical (soil pH, electrical conductivity, soil organic carbon, extractable P), physical (particle size distribution), and biochemical measurements (enzymatic assays and extraction of soil DNA). Moreover, the total concentration of trace and macro- and microelements were measured for assessing element levels and possible contamination of soils.

Results and discussion

The results demonstrated that compared with field moist soil, drained soil conditions resulted in a significant increase (P < 0.05) of β-glucosidase, arylsulfatase, alkaline and acid phosphomonoesterase, leucine aminopeptidase, and chitinase activities in almost all rotations. The results obtained point to a land with high soil contamination by Li and TI. Moreover, soil DNA was negatively correlated to soil TI stress (r = ? 0.41, p ? 0.01). The P–S–R rotation had the highest TI concentration in April and it is likely to be responsible for the lowest enzyme activities in the field-moist condition.The total concentrations of most studied elements (Al, As, Be, Cd, Co, Cr, Cu, Fe, Ni, Pb, Sb, Sn, Sr, V, Zn) in the soil samples fell within the natural geochemical background concentration levels.

Conclusions

The obtained results suggest that the activity of most enzymes decreases in the different experimental conditions with the following order: drained soil > late waterlogging > early waterlogging > moist soil. However, the response of enzymes to waterlogging differed with the chemical element and the cropping pattern. The best rotation system for chitinase, leucine aminopeptidase, and β-glucosidase activity (C and N cycles) was R-R-R, while for arylsulfatase, alkaline, and acid phosphatase activities (S and P cycles), it was the S-R-R.

     

A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils

Soil microbes face highly variable moisture conditions that force them to develop adaptations to tolerate or avoid drought. Drought conditions also limit the supply of vital substrates by inhibiting diffusion in dry conditions. How these biological and physical factors affect carbon (C) cycling in soils is addressed here by means of a novel process-based model. The model accounts for different microbial response strategies, including different modes of osmoregulation, drought avoidance through dormancy, and extra-cellular enzyme production. Diffusion limitations induced by low moisture levels for both extra-cellular enzymes and solutes are also described and coupled to the biological responses. Alternative microbial life-history strategies, each encoded in a set of model parameters, are considered and their effects on C cycling assessed both in the long term (steady state analysis) and in the short term (transient analysis during soil drying and rewetting). Drought resistance achieved by active osmoregulation requiring large C investment is not useful in soils where growth in dry conditions is limited by C supply. In contrast, dormancy followed by rapid reactivation upon rewetting seems to be a better strategy in such conditions. Synthesizing more enzymes may also be advantageous because it causes larger accumulation of depolymerized products during dry periods that can be used upon rewetting. Based on key model parameters, a spectrum of life-history strategies thus emerges, providing a possible classification of microbial responses to drought.     

不同种植模式背景下栽植生姜对紫色土细菌多样性的影响

为了解栽植生姜对岷江下游紫色丘陵区不同种植模式背景下典型紫色土微生物多样性的影响,采用PCR-DGGE与DNA序列分析方法,研究了紫色丘陵区玉米+红薯间作、大豆单作、生姜连作、水稻-紫云英轮作等4种典型种植模式背景下栽植生姜前后土壤细菌多样性变化特征。PCR-DGGE分子指纹图谱结果表明,同一种植模式下栽种生姜前后DGGE条带数目、位置和亮度差异明显。栽种生姜均降低了各模式下土壤细菌群落丰富度和Shannon-Wiener指数,明显改变了土壤细菌群落结构,其中生姜连作模式背景下土壤细菌丰富度和Shannon-Wiener指数下降幅度最大,玉米+红薯间作模式下降幅度最小,但栽植生姜后4种种植模式之间土壤细菌群落结构相似度明显增加。DGGE特征条带的序列分析表明,栽植生姜后,土壤细菌中的部分绿弯菌门类群消失,部分硝化螺旋菌门类群仅在水稻-紫云英轮作模式中发现、玉米+红薯间作模式中出现了短波单胞菌门的细菌。这些结果为了解栽植生姜对土壤环境的影响以及生姜种植模式的优化提供了一定的科学依据。     

二甲基二硫熏蒸对保护地连作土壤微生物群落的影响

随着保护地高附加值经济作物的连年栽培, 土传病害问题愈发突出, 熏蒸剂也因此得以更广泛的应用。但鉴于熏蒸剂的广谱性, 在杀死有害生物的同时, 不可避免地对非靶标生物产生一定的影响。为明确溴甲烷替代药剂二甲基二硫(dimethyl disulfide, 简称DMDS)熏蒸对土壤微生物群落的影响, 本研究在室内条件下采用BIOLOG 方法, 测定不同浓度DMDS 熏蒸对保护地连作土壤微生物群落的影响。研究结果表明: 不同浓度DMDS(170.00 mg·kg^-1、85.20 mg·kg^-1、42.50 mg·kg^-1、21.30 mg·kg^-1 和10.62 mg·kg^-1)熏蒸处理对镰孢菌属(Fusarium spp.)和疫霉菌属(Phytophthora spp.)的LC₅₀(抑制中浓度)分别为42.08 mg·kg^-1 和115.15 mg·kg^-1。DMDS 熏蒸后恢复培养0 d 取样, 温育120 h 时, 170.00 mg·kg^-1、42.50 mg·kg^-1 和10.62 mg·kg^-1 的DMDS 处理土壤的AWCD 值(平均每孔颜色变化率, average well-color development, AWCD)分别比空白对照升高8.46%、6.02%、19.31%, 表明DMDS 促进了土壤微生物的生长。恢复培养14 d 后, 各处理土壤微生物的AWCD 值恢复至对照水平。多样性指数分析显示, DMDS 熏蒸后恢复培养0 d 时, 土壤微生物群落的Shannon 指数、Simpson指数均高于空白对照, McIntosh 指数与对照无显著性差异; 恢复培养7 d 后, Shannon 指数与Simpson 指数恢复至对照水平。主成分分析结果显示, DMDS 熏蒸后恢复培养0 d 时, 各处理间微生物对碳源的利用方式差异显著, 恢复培养14 d 后, DMDS 对微生物碳源利用方式的影响逐渐减弱, 恢复至对照水平。结果表明, DMDS 熏蒸处理对土壤微生物的生长具有促进作用, 影响了微生物对碳源的利用方式, 但在恢复培养14 d 后, 被干扰的土壤微生物逐渐恢复至对照水平。DMDS 熏蒸处理在有效防控土传病原真菌的同时, 不会对土壤微生物群落产生明显的扰动影响, 对环境较安全。     

Microbial degradation of hydrolysable and condensed tannin polyphenol-protein complexes in soils from different land-use histories

Polyphenols are capable of binding to proteins and form polyphenol-protein complexes thus reducing the release of N from decomposing plant materials. The objective of this work was to test if under polyphenol-rich vegetations adapted microbial communities had developed capable of breaking down recalcitrant polyphenol-protein complexes. Soils used for this investigation were from different 10-year-old tropical agricultural systems (maize, sugarcane plots and Gliricidia sepium or Peltophorum dasyrrachis woodlots) and natural systems (secondary forest and Imperata cylindrica grassland). TA (tannic acid, hydrolysable tannin), QUE (quebracho, condensed tannin), BSA (bovine serum albumin, protein) or TA/BSA and QUE/BSA polyphenol-protein complexes were incubated at 28 °C in these soils. CO₂-C and ¹³C evolution were periodically monitored and mineral N release, microbial biomass N and phospholipid fatty acid (PLFA) profiles measured at the end.QUE was able to bind about 25% more protein than TA. In all systems the individual uncomplexed substrates were more easily degraded than the complexes. On average, net cumulative CO₂-C evolution from TA/BSA complexes was more than 5 times higher than from QUE/BSA complexes, indicating higher C availability and/or lower protection capability of TA compared to QUE. However, net N release was higher from QUE/BSA than from TA/BSA probably due to their higher protein-binding capacity and associated larger degradation of partly unprotected protein as suggested by ¹³C-CO₂ signatures. Microbial respiration patterns indicated that polyphenol complexes were initially degraded more quickly in the maize cropping system than in soils from under polyphenol-rich communities (Peltophorum and natural forest) but this pattern reversed with time. Long-term incubation of QUE/BSA complexes even caused a negative effect on microbial respiration in agricultural soils with low polyphenol contents (e.g. maize and sugarcane).Incubation of polyphenol complexes in soil depressed microbial biomass N in maize, sugarcane, Imperata and forest systems and led to reduced soil pH. However, microbial biomass was increased under the polyphenol-rich vegetation of Peltophorum. The PLFA group 18:2w6,9 was highly enhanced by condensed tannin-protein complexes additions as compared to control and hydrolysable polyphenol-protein complexes in soils with high polyphenol contents. Polyphenol complexes increased the fungi:bacteria ratio in systems with a high polyphenol content, particularly with condensed tannin complexes. The results indicated that systems with a high polyphenol content favoured development of fungal communities that are highly adaptable to phenol-rich soil conditions and high acidity, particularly with regards to the more recalcitrant condensed tannin-protein complexes.     

Diversity of heterotrophic aerobic cultivable microbial communities of soils treated with fumigants and dynamics of metabolic, microbial, and mineralization quotients

A combination of molecular and classical techniques was used to study the composition, structure, diversity, and dynamics of an aerobic heterotrophic cultivable bacterial community isolated from five different soil samples treated with the fumigant agent 1,3-dichloropropene (1,3-D) and further subjected to nitrogen–phosphorous–potassium (NPK) fertigation (F), amendment (C ₂ and C ₄), and NPK fertigation plus amendment (F + C) in two different periods (May and July). The restriction and sequence analysis of 16S rDNA from 189 isolates revealed a very high percentage (94%) of Gram-positive bacterial isolates, most of which (83%) belonging to the genus Bacillus. The degree of intraspecific genetic diversity was high, as shown by random amplified polymorphic DNA analysis. These data seem to be related with the increase in microbial biomass C (C _mic) content and the decrease in the total organic C (C _org) and metabolic quotient (qCO₂) values, especially in amended soils (C ₂, C ₄) where soil microflora mineralized the organic matter of the added fertilizers. In a short term, it is suggested that the presence of very high percentage of Gram-positive bacteria might be related to the ability of these bacteria to form spores so as to be resistant to fumigants rather than being the result of a selective pressure in the predominance of microbial species with a set of genes involved in biodegradation of 1,3-D. Stefano Mocali and Donatella Paffetti contributed equally to this work.     

大棚辣椒连作土壤微生物数量、酶活性与土壤肥力的关系

选取不同连作年限的辣椒大棚土壤和相邻露地小麦-辣椒轮作土壤(对照),研究了大棚辣椒连作土壤微生物数量、酶活性与土壤肥力的关系。结果表明,连作土壤养分含量显著高于对照,而pH值显著低于对照;土壤细菌,放线菌数量随连作年限延长呈先增加后降低的趋势并高于对照,而真菌数量不断增加;连作土壤酶活性含量均显著高于对照。土壤细菌数量与土壤有机质、全磷呈显著相关性,真菌数量与土壤养分无显著相关性,放线菌数量、过氧化氢酶、蔗糖酶、脲酶活性与pH值呈显著负相关性,与养分呈显著相关性。土壤全磷、全氮、pH值对微生物数量的影响较大,而全氮、pH值对土壤酶活性的影响较大。     

柳枝稷生物炭对来自不同地区的两种土壤上植物生物量和微生物动态的影响

Biochar amendments to soils may alter soil function and fertility in various ways, including through induced changes in the microbial community. We assessed microbial activity and community composition of two distinct clayey soil types, an Aridisol from Colorado (CO) in the U.S. Central Great Plains, and an Alfisol from Virginia (VA) in the southeastern US following the application of switchgrass (Panicum virgatum) biochar. The switchgrass biochar was applied at four levels, 0%, 2.5%, 5%, and 10%, approximately equivalent to biochar additions of 0, 25, 50, and 100 t ha^-1, respectively, to the soils grown with wheat (Triticum aestivum) in an eight-week growth chamber experiment. We measured wheat shoot biomass and nitrogen (N) content and soil nutrient availability and N mineralization rates, and characterized the microbial fatty acid methyl ester (FAME) profiles of the soils. Net N mineralization rates decreased in both soils in proportion to an increase in biochar levels, but the effect was more marked in the VA soil, where net N mineralization decreased from -2.1 to -38.4 mg kg^-1. The 10% biochar addition increased soil pH, electrical conductivity, Mehlich- and bicarbonate-extractable phosphorus (P), and extractable potassium (K) in both soil types. The wheat shoot biomass decreased from 17.7 to 9.1 g with incremental additions of biochar in the CO soil, but no difference was noted in plants grown in the VA soil. The FAME recovery assay indicated that the switchgrass biochar addition could introduce artifacts in analysis, so the results needed to be interpreted with caution. Non-corrected total FAME concentrations indicated a decline by 45% and 34% with 10% biochar addition in the CO and VA soils, respectively, though these differences became nonsignificant when the extraction efficiency correction factor was applied. A significant decline in the fungi:bacteria ratio was still evident upon correction in the CO soil with biochar. Switchgrass biochar had the potential to cause short-term negative impacts on plant biomass and alter soil microbial community structure unless measures were taken to add supplemental N and labile carbon (C).     

Influence of vegetation types and soil properties on microbial biomass carbon and metabolic quotients in temperate volcanic and tropical forest soils

Abstract

There is limited knowledge about the differences in carbon availability and metabolic quotients in temperate volcanic and tropical forest soils, and associated key influencing factors. Forest soils at various depths were sampled under a tropical rainforest and adjacent tea garden after clear-cutting, and under three temperate forests developed on a volcanic soil (e.g. Betula ermanii and Picea jezoensis, and Pinus koraiensis mainly mixed with Tilia amurensis, Fraxinus mandshurica and Quercus mongolica), to study soil microbial biomass carbon (MBC) concentration and metabolic quotients (qCO₂, CO₂-C/biomass-C). Soil MBC concentration and CO₂ evolution were measured over 7-day and 21-day incubation periods, respectively, along with the main properties of the soils. On the basis of soil total C, both CO₂ evolution and MBC concentrations appeared to decrease with increasing soil depth. There was a maximal qCO₂ in the 0–2.5 cm soil under each forest stand. Neither incubation period affected the CO₂ evolution rates, but incubation period did induce a significant difference in MBC concentration and qCO₂ in tea soil and Picea jezoensis forest soil. The conversion of a tropical rainforest to a tea garden reduced the CO₂ evolution and increased the qCO₂ in soil. Comparing temperate and tropical forests, the results show that both Pinus koraiensis mixed with hardwoods and rainforest soil at less than 20 cm depth had a larger MBC concentration relative to soil total C and a lower qCO₂ during both incubation periods, suggesting that microbial communities in both soils were more efficient in carbon use than communities in the other soils. Factor and regression analysis indicated that the 85% variation of the qCO₂ in forest soils could be explained by soil properties such as the C:N ratio and the concentration of water soluble organic C and exchangeable Al (P < 0.001). The qCO₂ values in forest soils, particularly in temperate volcanic forest soils, decreased with an increasing Al/C ratio in water-soluble organic matter. Soil properties, such as exchangeable Ca, Mg and Al and water-soluble organic C:N ratio, were associated with the variation of MBC. Thus, MBC concentrations and qCO₂ of the soils are useful soil parameters for studying soil C availability and microbial utilization efficiency under temperate and tropical forests.     

Effects of different long-term cropping systems on phosphorus adsorption and desorption characteristics in red soils

Journal of Soils and Sediments - Phosphorus (P) fertilizer has been applied in regions with red soils to ensure high crop yield. However, the supply of bioavailable P for crop plants is...     

不同植烟年限土壤pH和酶活性的变化

随着烟草连作年限的延长，烟田土壤的某些性质往往发生不同程度的恶化，从而对烟叶产质量造成不良的影响，这已成为当前我国烟叶生产可持续发展的重要限制因子。目前我国关于连作烟田土壤障碍因子的研究多集中在土壤养分方面怯引，而对土壤酶活性等其他可能性因子的研究则报道较少。为此，我们对不同植烟年限土壤的pH和酶活性的变化进行了调查研究，希望为更加有效地调控连作烟田土壤障碍提供服务，改善烟叶产质量，促进烟叶生产的可持续发展。     

Metabolism and persistence of atrazine in several field soils with different atrazine application histories

To assess the potential occurrence of accelerated herbicide degradation in soils, the mineralization and persistence of (14)C-labeled and nonlabeled atrazine was evaluated over 3 months in two soils from Belgium (BS, atrazine-treated 1973-2008; BC, nontreated) and two soils from Germany (CK, atrazine-treated 1986-1989; CM, nontreated). Prior to the experiment, accelerated solvent extraction of bulk field soils revealed atrazine (8.3 and 15.2 μg kg(-1)) in BS and CK soils and a number of metabolites directly after field sampling, even in BC and CM soils without previous atrazine treatment, by means of LC-MS/MS analyses. For atrazine degradation studies, all soils were incubated under different moisture conditions (50% maximum soil water-holding capacity (WHC(max))/slurried conditions). At the end of the incubation, the (14)C-atrazine mineralization was high in BS soil (81 and 83%) and also unexpectedly high in BC soil (40 and 81%), at 50% WHC(max) and slurried conditions, respectively. In CK soil, the (14)C-atrazine mineralization was higher (10 and 6%) than in CM soil (4.7 and 2.7%), but was not stimulated by slurried conditions. The results revealed that atrazine application history dramatically influences its degradation and mineralization. For the incubation period, the amount of extractable atrazine, composed of residues from freshly applied atrazine and residues from former field applications, remained significantly greater (statistical significance = 99.5 and 99.95%) for BS and CK soils, respectively, than the amount of extractable atrazine in the bulk field soils. This suggests that (i) mostly freshly applied atrazine is accessible for a complex microbial community, (ii) the applied atrazine is not completely mineralized and remains extractable even in adapted soils, and (iii) the microbial atrazine-mineralizing capacity strongly depends on atrazine application history and appears to be conserved on long time scales after the last application.     

烤烟连作对耕层土壤酶活性及微生物区系的影响

以烤烟品种"龙江911"为材料,在大田试验条件下分别测定了连作1年和5年的烤烟耕层土壤酶活性及微生物区系变化。结果表明:烤烟连作1年的耕层土壤酸性磷酸酶与脲酶活性高于正茬(大豆-小麦-烤烟),而烤烟连作5年的土壤酸性磷酸酶与脲酶活性低于连作1年。在0~10 cm土层内,烤烟连作1年和连作5年的土壤过氧化氢酶活性均比正茬低,且连作5年土壤比连作1年土壤降低了35.47%。10~20 cm土层内,烤烟连作1年和5年的土壤蔗糖酶活性分别比正茬降低了30.27%和52.14%。烤烟连作减少了土壤细菌和放线菌数量,增加了真菌数量,细菌主要以土壤氨化细菌、好气性自生固氮菌和好气性纤维素分解菌降低为主。因此,烤烟连作破坏了微生物种群的平衡及降低土壤酶活性可能是引起烤烟连作障碍的主要原因之一。     

Plant litter decomposition and microbial characteristics in volcanic soils (Mt Etna,Sicily) at different stages of development

Soils at different developmental stages were sampled from eight sites on the slopes of Mt Etna, Sicily (Italy) and characterized for total C, microbial biomass and microbial respiration. The values of these parameters were greatest for the most developed soils, but differences in recent management and site characteristics limited analysis of trends with soil development across the eight sites. The decomposition kinetics of both intact leaf litter and the water-insoluble fraction of leaf litter from three common species on Etna [Etnean broom (Genista aetnensis), European chestnut (Castanea sativa), and Corsican pine (Pinus nigra)] were determined in four of the soils (the two with the smallest and the two with the largest organic C contents) in a laboratory experiment over 168 days to test two hypotheses. First, that the readily mineralized fraction of added plant C is greater when the plant material decomposes in well-developed soils compared to less developed soils, and second, that the microbial communities in less developed soils are less efficient at mineralizing C from low quality plant residues. The first hypothesis held for Genista and Pinus litter, but not Castanea litter. The second hypothesis was supported for the Castanea and Pinus litter, but not for the Genista litter. Thus, the general applicability of the hypotheses was dependent on the precise source and characteristics of the litter.     

Soil microbial communities under different soybean cropping systems: Characterization of microbial population dynamics, soil microbial activity, microbial biomass, and fatty acid profiles

This work analyzes the direct effect of soil management practices on soil microbial communities, which may affect soil productivity and sustainability. The experimental design consisted of two tillage treatments: reduced tillage (RT) and zero tillage (ZT), and three crop rotation treatments: continuous soybean (SS), corn–soybean (CS), and soybean–corn (SC). Soil samples were taken at soybean planting and harvest. The following quantifications were performed: soil microbial populations by soil dilution plate technique on selective and semi-selective culture media; microbial respiration and microbial biomass by chloroform fumigation-extraction; microbial activity by fluorescein diacetate hydrolysis; and fatty acid methyl ester (FAME) profiles. Soil chemical parameters were also quantified. Soil organic matter content was significantly lower in RT and SS sequence crops, whereas soil pH and total N were significantly higher in CS and SC sequence crops. Trichoderma and Gliocladium populations were lower under RTSS and ZTSS treatments. Except in a few cases, soil microbial respiration, biomass and activity were higher under zero tillage than under reduced tillage, both at planting and harvest sampling times. Multivariate analyses of FAMEs clearly separated both RT and ZT management practices at each sampling time; however, separation of sequence crops was less evident. In our experiments ZT treatment had highest proportion of 10Me 16:0, an actinomycetes biomarker, and 16:1ω9 and 18:1ω7, two fatty acids associated with organic matter content and substrate availability. In contrast, RT treatment had highest content of branched biomarkers (i15:0 and i16:0) and of cy19:0, fatty acids associated with cell stasis and/or stress. As cultural practices can influence soil microbial populations, it is important to analyze the effect that they produce on biological parameters, with the aim of conserving soil richness over time. Thus, in a soybean-based cropping system, appropriate crop management is necessary for a sustainable productivity without reducing soil quality.     

Effect of biochar application on mineral and microbial properties of soils growing different plant species

Biochar is widely used as a soil amendment to increase crop yields. However, the details of its impact on soil properties have not been fully understood. A pot experiment was conducted using soybean (Glycine max (L.) Merr. cv. Toyoharuka) and sorghum (Sorghum bicolor (L.) Moench cv. Hybrid Sorgo) under four soil treatment combinations (cattle farmyard manure with or without biochar and rapeseed cake with or without biochar) to elucidate the mechanisms of its beneficial effects on plant growth in terms of the microbial community structure and mineral availability in soils with different types of organic manure application. The application of biochar significantly increased the growth of both species, particularly sorghum with rapeseed cake application by 1.48 times higher than that without biochar. Microbial activity in soil was also enhanced by biochar application in both species with rapeseed cake application, particularly in sorghum. Principal component analysis using Biolog EcoPlate^TM data indicated that biochar application changed the microbial community structure in soil, particularly sorghum-grown soil. The changes in microbial community structure in sorghum were considered to be at least partly affected by changes in soil pH due to interaction between plant and biochar under organic manure application. Biochar application had little effect on the profile of ammonium-acetate-extractable mineral elements in soil including calcium, potassium, magnesium, sodium and sulfur with both types of manure application under soybean. Under sorghum, however, biochar with rapeseed cake manure application altered the profile. This alteration is attributable to an increase in the extractable concentration of certain metals in the soil including aluminum, cadmium and zinc, possibly caused by enhanced organic matter decomposition producing metal-chelating organic compounds. These different changes in the soil properties by biochar application may be directly or indirectly related to the different growth responses of different plant species to biochar application under organic manure application.