Microorganisms as driving factors for the community structure of testate amoebae along an altitudinal transect in tropical mountain rain forests

We investigated microbial biomass, fungal biomass and microbial community structure at three altitudes (1000, 2000 and 3000 m) and in two soil layers [L/F layer (Layer I) and underlying H/Ah layer (Layer II)] of tropical mountain rain forests in southern Ecuador. Basal respiration, microbial biomass and concentration of ergosterol generally declined from Layer I to Layer II and peaked at 2000 m. Compared to temperate forest ecosystems microbial biomass and ergosterol concentrations were generally low. Patterns in phospholipid fatty acids indicated that the composition of microbial communities markedly changed from Layer I to Layer II. These differences between layers decreased with increasing altitude. The concentration of the arbuscular mycorrhizal fungal marker PLFA 16:1ω5c decreased with altitude in Layer I but increased in Layer II. The fungal-to-bacterial ratio increased with altitude and was higher in Layer I than in Layer II. Presumably, low microbial biomass in soils of tropical forest ecosystems is due to high temperature associated with high respiration but also low litter quality, with the latter declining with altitude. These conclusions are supported by the fact that at higher altitude the microbial community changed from a bacterial-dominated to a fungal-dominated system. CCA showed that microbial biomass correlated closely with density of a number of putatively bacterial feeding testate amoeba species including Corythion dubium Taranek, 1871, Euglypha cristata Leidy, 1879, Trigonopyxis arcula Penard, 1912, Tracheleuglypha dentata Deflandre, 1928 and Trinema lineare Penard, 1890. Ergosterol concentrations, but not the PLFA 18:2ω6c, strongly correlated with the putatively fungal feeding species Phryganella acropodia (Hertwig, Lesser, 1874) Hopkinson, 1909. Generally, parallel to microbial biomass and ergosterol concentrations the density of testate amoebae peaked at 2000 m. However, compared to microbial parameters changes in testate amoebae communities between two layers were less pronounced. The data suggest that density and community structure of testate amoebae are driven by the availability of food resources (bacteria and fungi) which at high altitude decrease with increasing moisture and decreasing pH.     

Protozoa from aboveground and ground soils of a tropical rain forest in Puerto Rico

Decomposition occurs in the aboveground and ground litter and soils of tropical rain forests, but little is known about the protozoa that stimulate bacterial activity and turnover. I examined litter and ground soils, epiphytic bryophyte soils on tree trunks and branches, and adventitious roots of lianas attached to tree trunks, within 2 m above ground in the Luquillo Experimental Forest, within the Caribbean National Forest, Puerto Rico. Amoebae numbered 69,000–170,000, ciliates 1000–25,000, and testate amoebae 58,000–190,000 g⁻¹ dry wt. of litter, but were reduced by 0.25–0.5 of these abundances in the underlying soils. In the aboveground soils, amoebae numbered 64,000–145,000, ciliates 1000–8000, and testate amoebae 84,000–367,000 g⁻¹ dry wt. of soil. Eighty species of ciliates and 104 species of testate amoebae were found. About 50% of the individuals in ciliate and 33% in testate amoebae populations were small r-selected species, illustrating that functional differences between species determine community composition. Although protozoan numbers are best described as “protozoan potential” because many individuals may be dormant, the high moisture content of tropical rain forest litter and soils suggest almost continually connected soil water films (necessary for protozoan transport), and together with the large numbers and biodiversity of protozoa, suggest that a major proportion of these protozoa contribute to the bacterial decomposition channel of organic matter.     

Distribution of and insights from soil protozoa of the Olympic coniferous rain forest

Decomposition occurs in the surface litter and soil to support temperate rainforests, but little is known about the protozoa that stimulate bacterial activity and turnover. I examined surface litter and top soils, fallen logs, and epiphytes within 2 m from the soil surface in Olympic National Park, USA, of the Pacific Northwest Temperate Coniferous Rain Forest. Ciliates in surface litter numbered 180-580 g⁻¹ dry weight, but were reduced by 20-60% in the underlying soils. Testate amoebae numbered 18,000-77,000 g⁻¹ dry weight in both litter and soil although they were often more abundant in underlying soils. Rotting logs, essential for tree regeneration, supported similar numbers of ciliates, but twice the numbers of testate amoebae. In three epiphytic soils, ciliates numbered 350-550, and testate amoebae 35,000-195,000 g⁻¹ dry weight of soil. In these soils, 26 species of gymnamoebae, 64 species of ciliates, and 113 species of testate amoebae were found. About 65% of the individuals in ciliate and 45% in testate amoebae populations were small, r-selected taxa. Rain forest soil protozoa have distinct testate amoebae populations, and are characterized by enormous biodiversity, the dominance of acrostome species, the proliferation of Euglypha and Nebela species, and the appearance of aquatic taxa. Ecological succession of ciliates and testate amoebae follows an additive (non-replacement) pattern according to a neutral model. The large numbers of persistent r-selected species respond to ecosystem disturbances by mobilizing quickly to resume the bacterivory necessary to help restore the recovering above-ground plant community.     

Influence of different land uses on soil nitrogen transformations after conversion from an Indian dry tropical forest

The effects of alternate land uses, such as grassland, cropland and mine spoil on mineral nitrogen (N), N-transformation rate and microbial biomass N (MBN) in dry tropical forest soils of India were studied. The mean annual mineral N in the forest, grassland, cropland and mine spoil ecosystems, respectively ranged from 15.24 to 19.58, 17.8 to 18.56, 16.49 to 19.85 and 10.52 to 13.44 µg g^− 1, net nitrification rate from 14.15 to 23.4, 10.11 to 11.38, 8.07 to 9.16, 10.52 to 13.44 µg g^− 1mo^− 1; net N-mineralization rate from 17.38 to 26.36, 13.99 to 15.41, 10.99 to 12.5, 5.43 to 7.68 µg g^− 1mo^− 1and and microbial biomass N from 41.25 to 58.87, 34.47 to 47.95, 27.88 to 30.43 and 22.95 to 25.26 µg g^− 1, respectively. The values were within the range reported by previous studies in different tropical environments. The mean annual net nitrification rates declined after conversion into grassland, cropland and mine spoil by 43, 54 and 78%, respectively, net N mineralization by 33, 46 and 70%, and microbial biomass N by 29%, 42% and 52%, respectively.The MBN was positively related to root biomass and total plant biomass, while microbial-N and inorganic N are reciprocally, while nitrification and N-mineralization are directly related to seasonal soil moisture and temperature. The microbial biomass N, nitrification and N-mineralization are negatively related to smaller fraction (< 0.1 mm) of the soil. Above- and below-ground biomass also have had their impact on microbial biomass N, and thereby N-mineralization. Thus, in dry tropical forests, land-use change affects remarkably the nitrogen transformation process in soil.     

Contribution of fine roots to ecosystem biomass and net primary production in black spruce, aspen, and jack pine forests in Saskatchewan

Fine root (<2 mm) processes contribute to and exhibit control over a large pool of labile carbon (C) in boreal forest ecosystems because of the high proportion of C allocated to fine root net primary production (NPP), and the rapid decomposition of fine roots relative to aboveground counterparts. The objective of this study was to determine the contribution of fine roots to ecosystem biomass and NPP in a mature black spruce (Picea mariana Mill.) (OBS), aspen (Populus tremuloides Michx.) (OA), and jack pine (Pinus banksiana Lamb.) (OJP) stand, and an 11-year-old harvested jack pine (HJP) stand in Saskatchewan. Estimates of fine root biomass and NPP were obtained from nine minirhizotron (MR) tubes at each of the four Boreal Ecosystem Research and Monitoring Sites (BERMS). Fine root data were collected once a month for May–September in 2003 and 2004. Additional C biomass and NPP data for various components of the forest stands were obtained from Gower et al. (1997) and Howard et al. (2004). Annual fine root biomass averaged 3.10 ± 0.89, 1.71 ± 0.49, 1.62 ± 0.32, and 2.96 ± 0.67 Mg C ha⁻¹ (means ± S.D.) at OBS, OA, OJP, and HJP, respectively, comprising between 1 and 6% of total stand biomass. Annual fine root NPP averaged 2.66 ± 0.97, 2.03 ± 0.43, 1.44 ± 0.43, and 2.16 ± 0.81 Mg C ha⁻¹ year⁻¹ (means ± S.D.) at OBS, OA, OJP, and HJP, respectively, constituting between 41 and 71% of total stand NPP. Results of this study indicate that fine roots produce a large amount of C in boreal forests. It is speculated that fine root NPP may control a large amount of labile C-cycling in boreal forests and that fine root responses to environmental and anthropogenic stress may be an early indicator of impaired ecosystem functioning.     

Effect of forest structure on the spatial variation in soil respiration in a Bornean tropical rainforest

This study was undertaken to identify critical and practical factors explaining spatial variations in soil respiration and to estimate stand-scale soil respiration in an aseasonal tropical rainforest on Borneo Island. To this aim, we conducted soil respiration measurements at 25 points in a 40 m × 40 m subplot of a 4 ha study plot between 2002 and 2006, and examined the spatial variation in soil respiration averaged over the 4 years in relation to soil, root, and forest structural factors. In addition, we examined the spatial representativeness of soil respiration measured in the subplot using a specific scaling procedure. Consequently, we found significant positive correlation between the soil respiration and forest structural parameters such as the mean diameter at breast height (DBH), total basal area, and maximum DBH within 6 m of the measurement points. The most important factor was the mean DBH within 6 m of the measurement points, which had a significant linear relationship with soil respiration. Using the derived linear regression and an inventory dataset, we estimated the 4 ha plot-scale soil respiration. The 4 ha plot-scale estimation (6.0 μmol m⁻² s⁻¹) was nearly identical to the subplot-scale measurements (5.7 μmol m⁻² s⁻¹), which were roughly comparable to the nocturnal CO₂ fluxes calculated using the eddy covariance technique. In addition, we discuss characteristics of the stand-scale soil respiration at this site by comparing with those of other forests reported in previous literature in terms of the soil C balance. Soil respiration at our site was noticeably greater, relative to the incident litterfall amount, than soil respiration in other tropical and temperate forests probably owing to the larger total belowground C allocation by emergent trees. Overall, this study suggests the arrangement of emergent trees with larger DBH and their belowground C allocation could be primary factors controlling spatial variations in soil respiration in the tropical rainforest.     

The distribution of volatile isoprenoids in the soil horizons around Pinus halepensis trees

We measured the terpene concentration in pentane and water extracts from soil horizons (litter, organic, top and low mineral) and from roots growing in top and low mineral horizons on a distance gradient from Pinus halepensis L. trees growing alone on a grassland. Terpene concentrations in pentane were higher than in water extracts, although β-caryophyllene showed relatively high solubility in water. The litter and roots were important sources of terpenes in soil. Alpha-pinene dominated in roots growing in both “top” (A1) and “low” (B) mineral horizons (123 ± 36 μg g⁻¹ or 14 ± 5 mg m⁻²) and roots in low mineral horizon (270 ± 91 μg g⁻¹ or 7 ± 2 mg m⁻²). Beta-caryophyllene dominated in litter (1469 ± 331 μg g⁻¹ or 2004 ± 481 mg m⁻²). Terpene concentration in soil decreased with increasing distance to the trunk. This is likely to be related to changes in litter and roots type on the distance gradient from pine to grass and herbs. The relative contributions of all compounds, except α-pinene, were similar in the mineral soils and litter. This suggests that litter of P. halepensis is probably the main source of major terpene compounds. However, long-term emissions of α-pinene from P. halepensis roots might also contribute to α-pinene concentrations in rhizosphere soils.     

Nitrogen flux patterns through Oxisols and Ultisols in tropical forests of Cameroon,Central Africa

We lack an understanding of nitrogen (N) cycles in tropical forests of Africa, although the environmental conditions in this region, such as soil type, vegetation, and climate, are distinct when compared with other tropical forests. Herein, we simultaneously quantified N fluxes through precipitation, throughfall, and 0-, 15-, and 30-cm soil solutions, as well as litterfall, in two forests with different soil acidity (Ultisols at the MV village (exchangeable Al³⁺ in 0–30 cm, 126 kmol_c ha^–1) and Oxisols at the AD village (exchangeable Al³⁺ in 0–30 cm, 59.8 kmol_c ha^–1)) over 2 years in Cameroon. The N fluxes to the O horizon via litterfall plus throughfall were similar for both sites (MV and AD, 243 and 273 kg N ha^–1 yr^–1, respectively). Those values were remarkably large relative to other tropical forests, reflecting the dominance of legumes in this region. The total dissolved N flux from the O horizon at the MV was 28 kg N ha^–1 yr^–1, while it was 127 kg N ha^–1 yr^–1 mainly as NO₃^–-N (~80%) at the AD. The distinctly different pattern of N cycles could be caused by stronger soil acidity at the MV, which was considered to promote a superficial root mat formation in the O horizon despite the marked dry season (fine root biomass in the O horizon and its proportion to the 1-m-soil profile: 1.5 Mg ha^–1 and 31% at the MV; 0.3 Mg ha^–1 and 9% at the AD). Combined with the published data for N fluxes in tropical forests, we have shown that Oxisols, in combination with N-fixing species, have large N fluxes from the O horizon; meanwhile, Ultisols do not have large fluxes because of plant uptake through the root mat in the O horizon. Consequently, our results suggest that soil type can be a major factor influencing the pattern of N fluxes from the O horizon via the effects of soil acidity, thereby determining the contrasting plant–soil N cycles in the tropical forests of Africa.     

Resolving systematic errors in estimates of net ecosystem exchange of CO2 and ecosystem respiration in a tropical forest biome

The controls on uptake and release of CO₂ by tropical rainforests, and the responses to a changing climate, are major uncertainties in global climate change models. Eddy-covariance measurements potentially provide detailed data on CO₂ exchange and responses to the environment in these forests, but accurate estimates of the net ecosystem exchange of CO₂ (NEE) and ecosystem respiration (R_eco) require careful analysis of data representativity, treatment of data gaps, and correction for systematic errors. This study uses the comprehensive data from our study site in an old-growth tropical rainforest near Santarem, Brazil, to examine the biases in NEE and R_eco potentially associated with the two most important sources of systematic error in Eddy-covariance data: lost nighttime flux and missing canopy storage measurements. We present multiple estimates for the net carbon balance and R_eco at our site, including the conventional “u* filter”, a detailed bottom-up budget for respiration, estimates by similarity with ²²²Rn, and an independent estimate of respiration by extrapolation of daytime Eddy flux data to zero light. Eddy-covariance measurements between 2002 and 2006 showed a mean net ecosystem carbon loss of 0.25 ± 0.04 μmol m⁻² s⁻¹, with a mean respiration rate of 8.60 ± 0.11 μmol m⁻² s⁻¹ at our site. We found that lost nocturnal flux can potentially introduce significant bias into these results. We develop robust approaches to correct for these biases, showing that, where appropriate, a site-specific u* threshold can be used to avoid systematic bias in estimates of carbon exchange. Because of the presence of gaps in the data and the day–night asymmetry between storage and turbulence, inclusion of canopy storage is essential to accurate assessments of NEE. We found that short-term measurements of storage may be adequate to accurately model storage for use in obtaining ecosystem carbon balance, at sites where storage is not routinely measured. The analytical framework utilized in this study can be applied to other Eddy-covariance sites to help correct and validate measurements of the carbon cycle and its components.     

Eight years of carbon dioxide exchange above a mixed forest at Borden, Ontario

This paper summarizes results from 8 years (1996–2003) of eddy covariance-based ecosystem CO₂ exchange measurements at the Borden Forest Research Station (44°19′N, 79°56′W). The site represents a mid-latitude, 100-year-old, mixed deciduous and coniferous forest dominated by red maple, aspen and white pine. The years 1996 and 1997 were relatively cold, had a late spring and received below average photosynthetic photon flux density (PPFD). This contrasts with an early spring, warmer soil and air temperatures during 1998–1999, and with distinctly wet year of 2000 and dry years of 2001–2003. The combination of early spring, warmer air and soil temperature and relatively high level of PPFD was associated with higher net ecosystem productivity (NEP) that peaked during 1999. Photosynthetic capacity was reduced and NEP showed a mid-growing season depression during the dry years of 2001–2003. Annual average ecosystem respiration (R) determined from a light response model was 30% less than R derived from a logistic respiration equation, relating night time CO₂ flux and soil temperature. However these independently determined R values were well correlated indicating that the site is unaffected by fetch and spatial heterogeneity problems. Based on the combined 8 years of growing season daytime data, an air temperature of 20–25 °C and a vapor pressure deficit (VPD) of 1.3 kPa were found to be the optimal conditions for CO₂ uptake by the canopy. Over the 1996–2003 period, the forest sequestered carbon at an average rate of 140 ± 111 gC m⁻² y⁻¹. The corresponding gross ecosystem photosynthesis (GEP) and R over this period were 1116 ± 93 gC m⁻² y⁻¹ and 976 ± 68 gC m⁻² y⁻¹, respectively. The annual carbon sequestration ranged from 19 gC m⁻² in 1996 to 281 gC m⁻² in 1999. However, these estimates were sensitive to frictional velocity threshold () used for screening data associated with poor turbulent mixing at night. Increasing from 0.2 m s⁻¹ (based on the inflection point in the nighttime CO₂ flux vs. u_* relationship) to 0.35 m s⁻¹ (determined using a selection algorithm based on change-point detection) modified the 8-year mean NEP estimate from 140 ± 111 gC m⁻² y⁻¹ to 65 ± 120 gC m⁻² y⁻¹. Both approaches show that the Borden forest was a low to moderate sink of carbon over the 8-year period.     

Seasonal patterns of testate amoeba diversity,community structure and species–environment relationships in four Sphagnum-dominated peatlands along a 1300 m altitudinal gradient in Switzerland

Altitudinal gradients are useful to study the potential effects of climate change on ecosystems. Historically, studies on elevation gradients have primarily focused on macro-organisms and ecosystem processes, while microorganisms have been mostly ignored despite their ubiquity and functional importance. We studied the temporal (about every two months from June 2008 until May 2009) variation of testate amoeba communities in four Sphagnum-dominated peatlands along a 1300 m elevation gradient in the Swiss Mountains (580–1880 m) in relation to water table depth and hydrochemistry with special focus on dissolved organic carbon (DOC), a useful proxy for changes in C-cycling in peatlands.The lowest site had significantly (P < 0.01) lowest testate amoeba density, species richness. The highest site had highest testate amoeba density (38 ind mg⁻¹ dry mass of Sphagnum). Seasonal fluctuations in testate amoeba species richness and diversity were not consistent among sites but density tended to peak in spring at all sites, autumn in the three highest sites and mid-winter in the upper two sites. In a redundancy analysis (RDA) community structure was more strongly correlated to altitude (33.8% of variance explained in living community) than to soil hydrological and hydro-chemical variables (together explaining 16.2% of variance). In a partial RDA with altitude used as covariable, the four sites were separated by DOP, DOC, DON, pH and average depth to water table.The abundance of high trophic level testate amoeba species (shell-aperture over their body size >0.20; i.e. primarily predators of protists and micro-metazoa) as well as the community size structure increased from lowest to highest elevation (respectively by 3.7× and 6×) and followed the seasonal patterns of total density, while DOC, DON, and DOC/DON decreased with elevation.These results agree with previously reported alteration of peatland microbial food chains in response to experimental warming, suggesting that climate-induced changes in microbial community structure (here a shortening of microbial food chains) represent a mechanism controlling the carbon balance of peatlands.     

Cold storage and laboratory incubation of intact soil cores do not reflect in-situ nitrogen cycling rates of tropical forest soils

Measurements of N transformation rates in tropical forest soils are commonly conducted in the laboratory from disturbed or intact soil cores. On four sites with Andisol soils under old-growth forests of Panama and Ecuador, we compared N transformation rates measured from laboratory incubation (at soil temperatures of the sites) of intact soil cores after a period of cold storage (at 5 °C) with measurements conducted in situ. Laboratory measurements from stored soil cores showed lower gross N mineralization and NH₄⁺ consumption rates and higher gross nitrification and NO₃⁻ immobilization rates than the in-situ measurements. We conclude that cold storage and laboratory incubation change the soils to such an extent that N cycling rates do not reflect field conditions. The only reliable way to measure N transformation rates of tropical forest soils is in-situ incubation and mineral N extraction in the field.     

Global warming affect Collembola community: A long-term study

Long-term (1992–2002) effects of climate changes on soil Collembola in Scots pine Pinus sylvestris forests in North Vidzeme Biosphere Reserve (northern Latvia) are investigated. The study was carried out in three forest stands of different age, young (30–40 years), middle aged (50–70 years), and old (150–200 years). One hundred soil samples were collected within each sampling site once a year in autumn over a period of 11 years. In total, 66 species of Collembola were found. Species richness varied between 47 and 56 and density of Collembola from 7300 to 8300 ind m⁻². A statistically significant increase in the sums of positive air temperatures (4 °C) was recorded during the period of investigation. Precipitation and thereby soil moisture showed considerable year-to-year fluctuations. Non-metric Multidimensional Scaling of the data yielded two axes explaining 48.6% and 38.6% of the variation. Axis 1 coincided with the trend of sums of positive air temperature (r=0.66). Axis 1 corresponded best with the negative impact of warming of climate on Collembola, mainly on the euedaphic species inhabiting the deeper layers of the organic soil horizon. Axis 2 was considered reflecting the effect of soil moisture fluctuations (correlation with moisture r=-0.62) on litter dwelling, mostly hemiedaphic Collembola. Species richness tended to decrease gradually in all forest sites during the study period from 29–36 to 13–26 species. Correlation between axes (r=0.455) indicated interaction effects between positive air temperatures and soil moisture. Forest age showed no substantial effect on the community structure, therefore the changes observed cannot be explained by ecological succession.     

Effect of deep ploughing on the water status of highly and less compacted soils for coconut (Cocos nucifera L.) production in Sri Lanka

Soil compaction limits soil water availability which adversely affects coconut production in Sri Lanka. Field experiments were conducted in coconut (Cocos nucifera L.) plantations with highly and less compacted soils in the intermediate climatic zone of Sri Lanka. Soil physical properties of sixteen major soil series planted with coconut were evaluated to select the most suitable soil series to investigate the effect of deep ploughing on soil water conservation. Soil compaction and soil water retention with respect to deep ploughing were monitored during the dry and rainy seasons using cone penetrometer and neutron scattering techniques, respectively. Evaluation of soil physical properties showed that the range of mean values of bulk density (BD) and soil penetration resistance (SPR) in the surface soil (0–10 cm depth) of major soil series in coconut lands was from 1.38 ± 0.02 to 1.57 ± 0.07 g/cm³ and 55 ± 10 to 315 ± 16.4 N/cm² respectively. The total available water fraction increased with clay content of soil as a result of high micropores. However, due to soil compaction, ability of soils to conserve water and to remain aerated was low for those series. Deep ploughing during the rainy and dry periods in highly compacted soils (BD > 1.5 g/cm³ and SPR > 250 N/cm²) greatly increased conserved soil water in the profile, while in less compacted soils (BD < 1.5 g/cm³ and SPR < 250 N/cm²) conserved water content was adversely affected. Soil water retention in bare soils of both highly and less compacted soil series was higher than that of live grass-covered soil. Amount of water conserved in ploughed Andigama series with respect to bare soils and grass-covered treatments during the severe dry period was 10.4 and 16.9 cm/m, while water storage reduction in the same treatments with ploughed Madampe series was 6.55 and 5.45 cm/m respectively. In addition, deep ploughing even in the effective root zone with live grass-covered highly compacted soils around coconut tree was favorable for soil water retention compared to that of live grass-covered less compacted soils.     

Sorptive interaction between goethite and strongly reducing organic substances from anaerobic decomposition of green manures

Strongly reducing organic substances (SROS) and iron oxides exist widely in soils and sediments and have been implicated in many soil and sediment processes. In the present work, the sorptive interaction between goethite and SROS derived from anaerobic decomposition of green manures was investigated by differential pulse voltammetry (DPV). Both green manures, Astragalus sinicus (Astragalus) and Vicia varia (Vicia) were chosen to be anaerobically decomposed by the mixed microorganisms isolated from paddy soils for 30 d to prepare different SROS. Goethite used in experiments was synthesized in laboratory. The anaerobic incubation solutions from green manures at different incubation time were arranged to react with goethite, in which SROS concentration and Fe(II) species were analyzed. The anaerobic decomposition of Astragalus generally produced SROS more in amount but weaker in reducibility than that of Vicia in the same incubation time. The available SROS from Astragalus that could interact with goethite was 0.69 ± 0.04, 0.84 ± 0.04 and 1.09 ± 0.03 cmol kg⁻¹ as incubated for 10, 15 and 30 d, respectively, for Vicia, it was 0.12 ± 0.03, 0.46 ± 0.02 and 0.70 ± 0.02 cmol kg⁻¹. One of the fates of SROS as they interacted with goethite was oxidation. The amounts of oxidizable SROS from Astragalus decreased over increasing incubation time from 0.51 ± 0.05 cmol kg⁻¹ at day 10 to 0.39 ± 0.04 cmol kg⁻¹ at day 30, but for Vicia, it increased with the highest reaching to 0.58 ± 0.04 cmol kg⁻¹ at day 30. Another fate of these substances was sorption by goethite. The SROS from Astragalus were sorbed more readily than those from Vicia, and closely depended upon the incubation time, whereas for those from Vicia, the corresponding values were remarkably less and apparently unchangeable with incubation time. The extent of goethite dissolution induced by the anaerobic solution from Vicia was greater than that from Astragalus, showing its higher reactivity.     

Coarse particulate organic matter is the primary source of mineral N in the topsoil of three beech forests

Forest soils contain a variable amount of organic N roughly repartitioned among particles of different size, microbial biomass and associated with mineral compounds. All pools are alimented by annual litter fall as main input of organic N to the forest floor. Litter N is further subject to mineralization/stabilization recognized as the crucial process for the turnover of litter N. Although it is well documented that different soil types have different soil N stocks, it is presently unknown how different soil types affect the turnover of recent litter N. Here, we compared the potential mineralization of the total soil organic N with that of recent litter-released N in three beech forests varying in their soil properties. Highly ¹⁵N-labelled beech litter was applied to stands located at Aubure, Ebrach, Collelongo, which differ in humus type, soil type and soil chemistry. After 4-5 years of litter decomposition, the upper 3 cm of the organo-mineral A horizon was sampled and the net N mineralization was measured over 112 days under controlled conditions. The origin of mineralized N (litter N versus soil organic N) was calculated using ¹⁵N labeling. In addition, soils were fractionated according to their particle size (>2000 μm, 200-2000 μm, 50-200 μm, <50 μm) and particulate organic matter (POM) was separated from the mineral fraction in size classes, except the <50 μm fraction. Between 41 and 69% of soil organic N was recovered as POM. Litter-released ¹⁵N was mainly to be found in the coarse POM fractions >200 μm. On a soil mass basis, N mineralization was two-fold higher at Aubure and Collelongo than at Ebrach, but, on a soil N basis, N mineralization was the lowest at Collelongo and the highest at Ebrach. On a soil N (or ¹⁵N) basis, mineralization of litter ¹⁵N was two to four-fold higher than mineralization of the average soil N. Furthermore, the δ¹⁵N of the mineral N produced was closer to that of POM than to that of the mineral-bound fraction (<50 μm). Highest rates of ¹⁵N mineralization happened in the soil with the lowest N content, and we found a negative relationship between accumulations of N in the upper A horizon and the mineralization of ¹⁵N from the litter. Our results show that mineral N is preferentially mineralized from POM in the upper organo-mineral soil irrespective of the soil chemistry and that the turnover rate of litter N is faster in soils with a low N content.     

Regional surface flux of CO2 inferred from changes in the advected CO2 column density

A Lagrangian experiment was conducted over Iowa during the daytime (9:00–17:30 LT) on June 19, 2007 as part of the North American Carbon Program's Mid-Continent Intensive using a light-weight and operationally flexible aircraft to measure a net drawdown of CO₂ concentration within the boundary layer. The drawdown can be related to net ecosystem exchange when anthropogenic emissions are estimated using a combination of the Vulcan fossil fuel emissions inventory coupled with a source contribution analysis using HYSPLIT. Results show a temporally and spatially averaged net CO₂ flux of −9.0 ± 2.4 μmol m⁻² s⁻¹ measured from the aircraft data. The average flux from anthropogenic emissions over the measurement area was 0.3 ± 0.1 μmol CO₂ m⁻² s⁻¹. Large-scale subsidence occurred during the experiment, entraining 1.0 ± 0.2 μmol CO₂ m⁻² s⁻¹ into the boundary layer. Thus, the CO₂ flux attributable to the vegetation and soils is −10.3 ± 2.4 μmol m⁻² s⁻¹. The magnitude of the calculated daytime biospheric flux is consistent with tower-based eddy covariance fluxes over corn and soybeans given existing land-use estimates for this agricultural region. Flux values are relatively insensitive to the choice of integration height above the boundary layer and emission footprint area. Flux uncertainties are relatively small compared to the biospheric fluxes, though the measurements were conducted at the height of the growing season.     

Spatial structures of N2O, CO2, and CH4 fluxes from Acacia mangium plantation soils during a relatively dry season in Indonesia

We investigated spatial structures of N₂O, CO₂, and CH₄ fluxes during a relatively dry season in an Acacia mangium plantation stand in Sumatra, Indonesia. The fluxes and soil properties were measured at 1-m intervals in a 1 × 30-m plot (62 grid points) and at 10-m intervals in a 40 × 100-m plot (55 grid points) at different topographical positions of the upper plateau, slope, and valley bottom in the plantation. Spatial structures of each gas flux and soil property were identified using geostatistical analysis. The means (±SD) of N₂O, CO₂, and CH₄ fluxes in the 10-m grids were 0.54 (±0.33) mg N m⁻² d⁻¹, 2.81 (±0.71) g C m⁻² d⁻¹, and −0.84 (±0.33) mg C m⁻² d⁻¹, respectively. This suggests that A. mangium soils function as a larger source of N₂O than natural forest soils in the adjacent province on Sumatra during the relatively dry season, while CO₂ and CH₄ emissions from the A. mangium soils were less than or consistent with those in the natural forest soils. Multiple spatial dependence of N₂O fluxes within 3.2 m (1-m grids) and 35.0 m (10-m grids), and CO₂ fluxes within 1.8 m (1-m grids) and over 65 m (10-m grids) was detected. From the relationship among N₂O and CO₂ gas fluxes, soil properties, and topographic elements, we suggest that the multiple spatial structures of N₂O and CO₂ fluxes are mainly associated with soil resources such as readily mineralizable carbon and nitrogen in a relatively dry season. The soil resource distributions were probably controlled by the meso- and microtopography. Meanwhile, CH₄ fluxes were spatially independent in the A. mangium soils, and the water-filled pore space appeared to mainly control the spatial distribution of these fluxes.     

Spatial variability of topsoils and vegetation in a grazed steppe ecosystem in Inner Mongolia (PR China)

It is not clear from the literature how the spatial distribution of topsoil and vegetation properties is affected by grazing cessation. Thus, the objective of this study was to elucidate if long‐term grazing exclosure increases spatial heterogeneity of topsoil and vegetation properties in a steppe ecosystem in NE China. Variograms and crossvariograms were calculated for bulk density, organic carbon (OC), total N, and total S concentration, δ¹³C, pH, Ah horizon thickness, vegetation cover, and aboveground biomass. Five sites with different grazing intensities (ungrazed since 1979, ungrazed since 1999, winter grazing, continuously grazed, heavily grazed) were sampled with two different grid sizes, allowing the exploration of scale effects. Small grids (15 m spacing, 5 m nested sampling) exhibited a different spatial structure compared to large grids (50 m spacing, 10 m nested sampling). Spatial distribution in small grids changed with grazing intensity. Generally, heterogeneity of topsoil properties increased with decreasing grazing intensity from a homogeneous to a patchy distribution. We attribute this to vegetation recovery/succession and deposition of windblown material in ungrazed areas. The plot ungrazed since 1999 showed different spatial dependencies than continuously and heavily grazed plots, but has not yet reached the high variability of the plot which was ungrazed since 1979. Large grid sampling did not detect small‐scale variability or grazing impacts, but showed spatial dependencies that were attributed to topography or soil erosion/deposition. Low OC concentration and low Ah thickness were associated with hilltop and shoulder positions, resulting in lower OC stocks at these topographic units.     

Endemic Collembola, privileged bioindicators of forest management

Our study compared the soil collembolan community at three semi-natural sites (a beech forest, a beech–fir forest and a fir stand) and three managed sites (Norway spruce, beech–fir and fir). Collembola were extracted from a total of 60 samples with a Berlese–Tullgren funnel, counted and identified to species level. A total of 7187 specimens, representing 51 species and 37 genera, were collected. There were significant differences between managed and natural forests (t-test, P=0.000). The communities and their population densities were significantly lower in the managed site: 51 species with 708,498 ind m⁻² in the semi-natural forests to 36 species and 306,042 ind m⁻² in the managed stands. The endemic component suffered a particularly severe decrease in species richness and abundance (57% and 71% lower in the managed forests, respectively). These species with narrow distribution and small local populations are doubly vulnerable to alterations of environmental conditions. They are very sensitive to loss of their natural habitat owing to human intervention and thus represent useful indicators of tolerance to environmental stress. We highlight the need to take endemic species into consideration in studies on the conservation of biodiversity because they are most at risk of extinction. Semi-natural forests are refuges for endemic species and should be protected.