Threats to at-risk salmonids of the Canadian Rocky Mountain region

Trout and charr, members of the salmonid family, have high conservation value but are also susceptible to anthropogenic threats in part due to the specificity of their habitat requirements. Understanding historical and future threats facing these species is necessary to promote their recovery. Of freshwater trout and charr in the Canadian Rocky Mountain region, westslope cutthroat trout (Oncorhynchus clarkii lewisi), bull trout (Salvelinus confluentus; a charr species) and Athabasca rainbow trout (Oncorhynchus mykiss) are of conservation concern. And indeed, range contractions and declining populations are evident throughout much of their ranges. Range contraction was most evident in the southern Alberta designatable unit (DU) of westslope cutthroat trout. Diminished populations were also evident in the downstream watersheds of the Alberta bull trout range, and throughout the Athabasca rainbow trout range. We assessed historical and future threats to evaluate the relative importance of individual threats to each DU and compare their impact among species. Individual threats fall into the broad categories of angling, non-native species and genes, habitat loss and alteration, and climate change. Severity of each threat varies by DU and reflects the interaction between species’ biology and the location of the DU. Severity of threats facing each DU has changed over time, reflecting extirpation of native populations, changes in management and industry best practices, expansion of non-native species and progressing climate change. The overall threat impact for each DU indicates a high probability of substantial and continuing declines and calls for immediate action.     

Are invasive and native trout functionally equivalent predators? Results and lessons from a field experiment

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Metapopulations and salmonids: a synthesis of life history patterns and empirical observations

Abstract – Metapopulation theory has attracted considerable interest with reference to the salmonids. There has been little empirical evidence, however, to guide the evaluation or application of metapopulation concepts. From knowledge of salmonid life histories and our own work with bull trout ( Salvelinus confluentus ), Lahontan cutthroat trout ( Oncorhynchus clarki henshawi ) and westslope cutthroat trout ( Oncorhynchus clarki lewisi ), we suggest that simple generalizations of salmonid metapopulations are inappropriate. Although spatial structuring and dispersal mechanisms are evident, the relevance of extinction and colonization processes are likely to vary with life history, species, scale, and landscape. Understanding dispersal, the role of suitable but unoccupied habitats, and the potential for extinction debts in non-equilibrium metapopulations are key issues. With regard to conservation of salmonids, we suggest that efforts to understand and conserve key processes likely to influence the persistence of populations or metapopulations will be more successful than efforts to design minimal habitat reserves based on metapopulation theory. ^NOTE     

Trophic relationships between a native and a nonnative predator in a system of natural lakes

Abstract – Bull trout, a species of char listed as threatened under the US Endangered Species Act, have been displaced from portions of their historic range following the introduction of nonnative lake trout. It has been suggested that competitive exclusion as a result of trophic overlap between bull trout and lake trout may be the causal mechanism associated with displacement of bull trout. This study used stable isotope data to evaluate trophic relationships among native bull trout, nonnative lake trout and other fishes in seven lakes in Glacier National Park (GNP), Montana. Bull trout and lake trout had greater δ¹⁵N values relative to other fishes among lakes (δ¹⁵N ≥ 3.0‰). Lake trout had greater δ¹⁵N values relative to bull trout (δ¹⁵N = +1.0‰). Bull trout had greater δ¹³C values relative to lake trout in six of the seven lakes examined. Although both bull trout and lake trout had greater δ¹⁵N values relative to other fishes within lakes in GNP, differences in δ¹⁵N and δ¹³C between bull trout and lake trout suggest that they are consuming different prey species or similar prey species in different proportions. Therefore, displacement of bull trout as a direct result of complete overlap in food resource use is not anticipated unless diet shifts occur or food resources become limiting. Additionally, future studies should evaluate food habits to identify important prey species and sources of partial dietary overlap between bull trout and lake trout.     

Prioritizing aquatic conservation areas using spatial patterns and partitioning of fish community diversity in a near‐natural temperate basin

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Adapting a multi‐species tool for single‐species impact assessments: Managing fishes at risk in Canada

1. To assess the impacts of human activity on fishes and fish habitat, impact assessment tools use single‐ and multi‐species approaches depending on the ecological and socio‐economic objectives. In Canadian aquatic ecosystems, single‐ and multi‐species impact assessments are guided by the Species at Risk Act and Fisheries Act, respectively. Yet, for species protected under the Species at Risk Act, the sparse data often require alternative approaches to risk assessment.
2. The goal of this study was to evaluate whether a database‐derived multi‐species tool – the Habitat Ecosystem Assessment Tool (HEAT) – can be used for single‐species impact assessments. Using an empirical example of proposed drain maintenance in a tributary of Lake St. Clair, the net loss of suitable habitat was evaluated across six conservation targets, ranging from single species, such as the pugnose shiner (Notropis anogenus) and the yellow perch (Perca flavescens), to the entire fish assemblage. Model outcomes were compared across various habitat suitability indices, spatial resolutions, and environmental habitat layers.
3. The net loss of suitable habitat varied widely across conservation targets and was greatest for the rare specialist species (pugnose shiner). Single‐species conservation targets were more sensitive to variation in spatial resolution and uncertainty in model input parameters. The results of this study emphasize that single‐ and multi‐species conservation targets should not be considered equal, especially when species differ in abundance and niche breadth.
4. This study demonstrates the flexibility of HEAT for evaluating potential impacts of human disturbance on fishes and their habitat. Future development of this tool should expand beyond physical habitat, to include other factors relevant to species distribution and survival (e.g. biotic interactions).

     

Assessing the role of the aquatic Natura 2000 network to protect both freshwater European species of community interest and threatened species in a Mediterranean region

1. The European Natura 2000 (N2K) network of protected areas stands out as the main conservation strategy in the European Union to preserve biodiversity under the auspices of the Convention on Biological Diversity.
2. The management of N2K sites is mainly focused on protecting the biological elements as Special Areas of Conservation for habitats or species listed in the European Habitats Directive, or as Special Protection Areas for birds listed in the European Birds Directive for which the site was designated. It seems urgent, therefore, to discriminate which N2K sites are really providing effective protection for aquatic biodiversity.
3. Although the main objective of N2K is to protect species listed in the Birds and Habitats Directives, the conservation status of threatened species included in the European Red List of the IUCN must also be a concern for the European Union.
4. Focusing on Central Spain as a case study, the aim of this work was to evaluate how far aquatic N2K (i.e. N2K sites designated for the occurrence of freshwater elements) is effective in protecting both those aquatic species in the Directives [referred to here as Species of Community Importance (SCI) and threatened species (TS)].
5. Most of the N2K sites in the study area have been designated using aquatic elements, which means that N2K could theoretically provide appropriate mechanisms to preserve aquatic biodiversity. However, N2K provides a low percentage of overlap with some of the hotspots identified for both TS and SCI. Surprisingly, TS are in general similarly or even better represented than SCI by N2K.
6. N2K may provide good coverage for aquatic biodiversity, mainly by acting as an umbrella for other species, but it could be improved by addressing some spatial gaps, thereby making it more relevant to current challenges such as climate change and other human impacts.

     

Myxobolus cerebralis (Hofer) infection risk in native cutthroat trout Oncorhynchus clarkii (Richardson) and its relationships to tributary environments in the Yellowstone Lake Basin

Conservation of native species is challenged by the introduction of non‐native pathogens and diseases into aquatic and terrestrial environments worldwide. In the Yellowstone Lake basin, Yellowstone National Park, the invasive parasite causing salmonid whirling disease Myxobolus cerebralis (Hofer) has been identified as one factor contributing to population declines of native Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri (Jordan & Gilbert). In 2002 and 2003, we examined relationships between the stream environment and severity of M. cerebralis infection in native trout. Coefficients of variation of environmental features were calculated to examine variability. Ten years later, we reassessed infection levels at 22 tributaries broadly across the system. Results of principal component analysis (PCA) of physical features (2003) were negatively correlated with infection severity, mostly in lower jaw cartilage of cutthroat trout, and PCA of chemical features (and temperature) correlated with infection severity in cranial cartilage. Pelican Creek, where M. cerebralis prevalence and severity was high 2002–2003, remained high in 2012. We did not find evidence that the parasite had dispersed further within the system. Variable environmental features (physiological stress) across short spatiotemporal scales within a stream or season may possibly predispose salmonids to infection in the wild and facilitate parasite establishment.     

From a research study to a conservation partnership: Developing approaches to restoring common scoter populations

• 1. Like many sea‐duck populations, the British breeding population of common scoters Melanitta nigra has declined markedly. In 2009, a study was established to measure factors affecting lake use by breeding scoters, to inform conservation measures. That study, published in Aquatic Conservation: Marine and Freshwater Ecosystems (AQC) in 2016, showed that lakes used by scoters had relatively more shallow water and large invertebrates. Furthermore, lakes with abundant large invertebrates had relatively few brown trout Salmo trutta. These results probably reflect the importance of foraging habitat (shallow water), prey abundance (large invertebrates), and competition for prey (trout abundance) in influencing scoter lake use.
• 2. To develop this study, additional research, and scoter conservation measures, we formed a long‐term partnership, comprising nature conservation non‐governmental organizations, statutory agencies, fisheries managers and the regional hydropower company. The partnership meets regularly to coordinate and review research and develop conservation measures, building on the earlier lake‐use study.
• 3. At key scoter lakes managed for hydropower, the partnership negotiated a revised water level management regime, favouring shallow water availability in the breeding season. This regime was informed by additional research, showing the value of certain islands for nesting scoters, and water level requirements to maintain these as islands.
• 4. In a different key scoter area — an extensive near‐natural peatland where recreational angling takes place — the partnership established a trial of increased brown trout angling, with increased fish removal, to determine whether this would increase invertebrate prey abundance and benefit breeding scoters. Both conservation interventions are currently being evaluated by detailed monitoring.
• 5. Overall, the earlier study published in AQC, was important in strengthening and informing our researcher–practitioner partnership, as we collaborated within an adaptive management framework to reverse scoter declines. Long‐term interdisciplinary partnerships are likely to have an important role to play in general, for the successful conservation of aquatic biodiversity.

     

Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest,USA

• 1. Conservation biologists need tools that can utilize existing data to identify areas with the appropriate habitat for species of conservation concern. Regression models that predict suitable habitat from geospatial data are such a tool. Multiple logistic regression models developed from existing geospatial data were used to identify large‐scale stream characteristics associated with the occurrence of mountain suckers (Catostomus platyrhynchus), a species of conservation concern, in the Black Hills National Forest, South Dakota and Wyoming, USA.
• 2. Stream permanence, stream slope, stream order, and elevation interacted in complex ways to influence the occurrence of mountain suckers. Mountain suckers were more likely to be present in perennial streams, and in larger, higher gradient streams at higher elevations but in smaller, lower gradient streams at lower elevations.
• 3. Applying the logistic regression model to all streams provided a way to identify streams in the Black Hills National Forest most likely to have mountain suckers present. These types of models and predictions can be used to prioritize areas that should be surveyed to locate additional populations, identify stream segments within catchments for population monitoring, aid managers in assessing whether proposed forest management will potentially have impacts on fish populations, and identify streams most suitable for stream rehabilitation and conservation or translocation efforts.
• 4. When the effect of large brown trout (Salmo trutta) was added to the best model of abiotic factors, it had a negative effect on the occurrence of mountain suckers. Negative effects of brown trout on the mountain sucker suggest that management of recreational trout fisheries needs to be balanced with mountain sucker conservation in the Black Hills. However, more spatially explicit information on brown trout abundance would allow managers to understand where the two species interact and where recreational fisheries need to be balanced with fish conservation.

Copyright © 2008 John Wiley & Sons, Ltd.     

Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review

Northcote TG. Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review. Ecology of Freshwater Fish 2010: 19: 487–509. © 2010 John Wiley & Sons A/S Abstract – Controls for trout and char migratory and resident behaviour in rivers and streams for above and below natural and man‐made waterfalls/barriers are covered in a multi‐decadal (1950–2000) and wide geographical review (North America, UK, Europe, Japan) that includes reference to over 380 publications. These note 53 for rainbow trout, 61 for cutthroat trout, 104 for brown trout, 47 for bull trout, 41 for brook trout, 35 for Dolly Varden and 42 for white‐spotted char, plus a few general contributions of relevance on some. For each of these species, there has been a major increase in relevant decadal publications since the early 1980s, no doubt in large part because of the upsurge in micro‐genetic methodology for DNA and related technology, coupled with a broadening of interest in stream migratory behaviour of salmonids. Main mechanisms for the control of stream migratory versus resident behaviour appear to cover an interplay among both genetic and environmental factors; in some populations and locations, genetic controls seem to be more important than environmental ones, but in others the reverse. Habitat degradation by various human activities and their introductions of non‐native fish species are becoming causes of reduction in abundance of above and below waterfall stream populations for several of these salmonid species.     

Objective classification of Navarro River salmon habitat: a watershed‐based critical habitat case study

• 1. Prevailing freshwater conservation approaches in the USA stem from policy‐based ecosystem management directives, science‐based gap analyses, and legal interpretations of critical habitats. In California, there has been no systematic prioritization of freshwater habitats critical to the persistence of anadromous salmonid populations.
• 2. Anadromous salmonids provide an optimal focal species for conservation prioritization of freshwater habitats in California owing to their flagship, umbrella and keystone status.
• 3. The Navarro River is a key watershed for both Endangered Species Act and Clean Water Act recovery efforts in the state of California. This watershed serves as a case study in the use of iterative discriminant analysis to objectively classify freshwater habitats critical to the persistence of two species of threatened anadromous salmonids, steelhead (Oncorhynchus mykiss) and coho (Oncorhynchus kisutch).
• 4. Riverscape parameters were used initially to define suitable habitat for focal species; subsequent refinement accounted for human disturbance within the watershed. Results from this study identify 22.1 km of riverine habitat critical to the persistence of coho salmon in the Navarro River watershed, which need active conservation or restoration; it also identified an additional 269.4 km of riverine habitat in need of protection for its aquatic habitat values.

Copyright © 2007 John Wiley & Sons, Ltd.     

Aquatic macroinvertebrates from littoral vegetated lakes in arid Patagonia: The influence of fish introduction on community structure

1. Wetlands in arid regions are characterized by their great heterogeneity, often including endemic species that contribute to regional aquatic biodiversity. In the Patagonian steppe, most lakes are naturally fishless and sustain a rich aquatic biodiversity, including endemics; however, many of these lakes have been stocked with Oncorhynchus mykiss (rainbow trout) during recent decades. The introduction of predatory fish into aquatic ecosystems naturally devoid of these organisms can produce profound alterations in the structure of the original communities and in the configuration of their biotic assemblages.
2. Aquatic invertebrates play important roles in both the structure and functioning of freshwater ecosystems, including their contribution to global biodiversity and their cascading effects across ecosystem boundaries.
3. The aim of this study was to assess the effect of introduced non-native fish on the pleustonic macroinvertebrate assemblage. Samples were taken from 10 shallow Patagonian lakes (five fishless and five stocked with fish) in two consecutive warm periods.
4. Lakes with fish had higher conductivity and phosphate values. Higher inter-annual differences were also observed in lakes with fish for phytoplanktonic chlorophyll a, nitrate, phosphate, conductivity, and water temperature.
5. The community structure (relative abundance of different taxa, species composition, and diversity index) was affected by the presence of rainbow trout, with the differences mainly driven by the relative abundance of Ostracoda, Hyalella, Chironomidae, and Haliplus species.
6. This approach can be used to assess the required conservation actions in shallow Patagonian steppe lakes, which have been listed as priority areas for waterbird conservation. Specifically, this study provides a baseline for monitoring future trends of the macroinvertebrate communities and for evaluating conservation and management efforts over time.

     

Temporal segregation in spawning between native Yellowstone cutthroat trout and introduced rainbow trout

Hybridisation with introduced taxa poses a threat to native fish populations. Mechanisms of reproductive isolation can limit or prevent hybridisation between closely related species. Understanding how these mechanisms interact between the same species across geographically distinct occurrences of secondary contact, and how regional factors influence them, can inform our understanding of hybridisation as a threat and management actions to mitigate this threat. We used data collected on adult fish migration timing and approximate emergence timing of subsequent juvenile fish paired with genomic data to assess whether temporal isolation in the timing of spawning exists between Yellowstone cutthroat trout, rainbow trout and hybrids in the North Fork Shoshone River drainage in northwest Wyoming. We found evidence that Yellowstone cutthroat trout spawn, on average, two to four weeks later than rainbow trout and hybrids and two environmental covariates related to water temperature and discharge were associated with differences in spawning migration timing. Despite statistical support for Yellowstone cutthroat trout spawning later, disproportionately high numbers of rainbow trout and hybrids, paired with extended spawning seasons, lead to substantial overlap between all genotypes. Our results provide further evidence of temporal segregation in the timing of spawning as a mechanism of reproductive isolation between closely related species, but substantial spawning overlap suggests temporal segregation alone will not be enough to curtail hybridisation in conservation populations.     

Changes in native bull trout and non‐native brook trout distributions in the upper Powder River basin after 20 years,relationships to water temperature and implications of climate change

Many bull trout populations have declined from non‐native brook trout introductions, habitat changes (e.g. water temperature) and other factors. We systematically sampled the distribution of bull trout and brook trout in the upper Powder River basin in Oregon in the 1990s and resampled it in 2013–2015, examined temperature differences in the habitats of the two species and analysed trends in temperatures in the light of possible increases associated with climate change. The species’ distributions are currently similar to those in the 1990s, except in one stream where bull trout declined. However, bull trout consisting of resident forms remain restricted to a few kilometres of habitat at the upper end of fish distribution. In streams where both species occur, the typical pattern was an intermediate zone of mixed bull trout, brook trout, and hybrids downstream of allopatric bull trout and allopatric brook trout extending farther downstream. Temperature differences between where bull trout and most brook trout occurred were small (0.5–1.0°C August mean). There were no statistical increases in water temperatures in nearby streams since the 1990s and no warming trends in air temperatures for the past 25–60 years. However, peak summer water temperatures are occurring about 3 weeks earlier than 25 years ago. Future effects of climate change, including possible increases in temperature, changes in timing and other factors (e.g. snowpack, flow and extreme events) remain a concern for the persistence of these populations. However, it is difficult to precisely predict where those changes will occur and what they will be.     

Rainbow trout effects on zooplankton in the reproductive area of the critically endangered hooded grebe

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The conservation of freshwater macroinvertebrate populations: a community‐based classification scheme

• 1. A novel conservation indexing protocol is presented which aims to summarize aquatic macroinvertebrate data obtained from inland flowing‐ and still‐water sites in Great Britain. Unlike other summary expressions of conservation value, the Community Conservation Index (CCI) accounts for community richness in the final analysis, as well as the relative rarity of species present.
• 2. Examples are provided to show how taxonomically rich ecosystems can obtain very high values of CCI that are broadly equivalent to CCI scores obtained from other sites supporting nationally rare species. In addition, the CCI is capable of local adjustment, to accommodate nationally common species occurring outside their normal range.
• 3. Examples show typical CCI outputs from a range of riverine and still‐water habitats, and illustrate how this analysis can help in the day‐to‐day assessment and management of both lotic and lentic ecosystems. The index has already been used in legal submissions for public inquiries on Sites of Special Scientific Interest protected under British law and has contributed to the designation of such sites. It has also been used to inform management decisions on sites selected as candidate Special Areas of Conservation and as an operational tool using routinely obtained datasets.
• 4. The CCI provides an empirical basis for conservation initiatives, programmes and strategies, by producing a summary of aquatic invertebrate data over any appropriate scale of time and space. Furthermore, the final analysis need not be constrained by distribution of nationally rare species, but can indicate exceptionally rich or regionally unusual invertebrate populations.

Copyright © 2004 John Wiley & Sons, Ltd.     

Stable isotope evaluation of population‐ and individual‐level diet variability in a large,oligotrophic lake with non‐native lake trout

Non‐native piscivores can alter food web dynamics; therefore, evaluating interspecific relationships is vital for conservation and management of ecosystems with introduced fishes. Priest Lake, Idaho, supports a number of introduced species, including lake trout Salvelinus namaycush, brook trout S. fontinalis and opossum shrimp Mysis diluviana. In this study, we used stable isotopes (δ¹³C and δ¹⁵N) to describe the food web structure of Priest Lake and to test hypotheses about apparent patterns in lake trout growth. We found that isotopic niches of species using pelagic‐origin carbon did not overlap with those using more littoral‐origin carbon. Species using more littoral‐origin carbon, such as brook trout and westslope cutthroat trout Oncorhynchus clarki lewisi, exhibited a high degree of isotopic niche overlap and high intrapopulation variability in resource use. Although we hypothesised that lake trout would experience an ontogenetic diet shift, no such patterns were apparent in isotopic signatures. Lake trout growth rates were not associated with patterns in δ¹⁵N, indicating that variation in adult body composition may not be related to adult diet. Understanding trophic relationships at both the individual and species levels provides a more complete understanding of food webs altered by non‐native species.     

A riverscape perspective of Pacific salmonids and aquatic habitats prior to large‐scale dam removal in the Elwha River,Washington, USA

Abstract Dam removal has been increasingly proposed as a river restoration technique. In 2011, two large hydroelectric dams will be removed from Washington State’s Elwha River. Ten anadromous fish populations are expected to recolonise historical habitats after dam removal. A key to understanding watershed recolonisation is the collection of spatially continuous information on fish and aquatic habitats. A riverscape approach with an emphasis on biological data has rarely been applied in mid‐sized, wilderness rivers, particularly in consecutive years prior to dam removal. Concurrent snorkel and habitat surveys were conducted from the headwaters to the mouth (rkm 65–0) of the Elwha River in 2007 and 2008. This riverscape approach characterised the spatial extent, assemblage structure and patterns of relative density of Pacific salmonids. The presence of dams influenced the longitudinal patterns of fish assemblages, and species richness was the highest downstream of the dams, where anadromous salmonids still have access. The percent composition of salmonids was similar in both years for rainbow trout, Oncorhynchus mykiss (Walbaum), coastal cutthroat trout, Oncorhynchus clarkii clarkii (Richardson) (89%; 88%), Chinook salmon, Oncorhynchus tshawytscha (Walbaum) (8%; 9%), and bull trout, Salvelinus confluentus (Suckley) (3% in both years). Spatial patterns of abundance for rainbow and cutthroat trout (r = 0.76) and bull trout (r = 0.70) were also consistent between years. Multivariate and univariate methods detected differences in habitat structure along the river profile caused by natural and anthropogenic factors. The riverscape view highlighted species‐specific biological hotspots and revealed that 60–69% of federally threatened bull trout occurred near or below the dams. Spatially continuous surveys will be vital in evaluating the effectiveness of upcoming dam removal projects at restoring anadromous salmonids.