Genetic diversity and differentiation in Chinese sour cherry <Emphasis Type="Italic">Prunus pseudocerasus</Emphasis> Lindl., and its implications for conservation

In this study, the genetic diversity and differentiation of 10 natural Prunus pseudocerasus Lindl. populations were investigated using inter-simple sequence repeat (ISSR) markers. Totally, 18 selected primers generated 150 loci, with an average of 8.33 bands per primer. The results showed that the percentage of polymorphic bands (PPB) was pretty low at the population level (PPB = 1.13–32%), but relatively high at the species level (PPB = 84%). Besides, a high level of genetic differentiation among populations was detected based on the gene differentiation coefficient (G _ST = 0.7118) and the hierarchical analysis of molecular variance (AMOVA) (Φ _ST = 64.53%, P < 0.001), in line with the low inter-population gene flow (N _m = 0.2025). Moreover, Mantel test revealed a significant correlation between genetic and geographic distances among the populations (r = 0.5272, P < 0.005). The high level of intraspecific genetic diversity was probably related with its life history traits, while its small population size and the resultant high levels of genetic drift and inbreeding might explain the low genetic diversity within populations. The relatively high inter-population genetic differentiation was largely attributed to its small population size, habitat fragmentation, the mode of pollen and seed dispersal, and geographic isolation. Based on the present study, conservation strategies were proposed to preserve this valuable natural germplasm resource.     

Genetic structure of highland papayas (<Emphasis Type="Italic">Vasconcellea pubescens</Emphasis> (Lenné et C. Koch) Badillo) cultivated along a geographic gradient in Chile as revealed by Inter Simple Sequence Repeats (ISSR)

In Chile Vasconcellea pubescens is cropped to produce canned fruit, juice, jam and processed sweets. Additionally this species produces latex with a high level of papain, an important and valuable proteolytic enzyme with industrial applications. In this investigation seven ISSR primers were used to study the level and organization of genetic diversity in 333 samples of V. pubescens. Out of the 114 bands recorded, 63 proved to be polymorphic (P = 55.3%). At the species level, the genetic diversity was rather low (h = 0.01 ± 6,80188E-05, Shannon’s Index I = 0.16 ± 0,000148). The major portion of the genetic diversity was found within groups (65%). The genetic differentiation between the different groups was significant, as the AMOVA analysis suggested (Φ_pt = 0.35). When analysing the Northern area alone, the differentiation increased to Φ_pt = 0.40. When only the Southern area was analysed, Φ_pt decreased to 0.18, indicating greater genetic similarity among the samples. The results generated from Structure and Bayesian Analysis of Population Structure distinguished 8 genetically different groups, five of them located in the north and three in the south. The results are discussed in the light of the growers’ practices.     

Genetic variation in the endangered Rutaceae species <Emphasis Type="Italic">Citrus hongheensis</Emphasis> based on ISSR fingerprinting

Citrus hongheensis is a critically endangered species endemic to the Honghe river region in southeastern Yunnan, China. Its genetic diversity and differentiation were investigated using Inter-Simple Sequence Repeat (ISSR) markers. One hundred primers were screened, and a total of 245 loci were amplified from seven natural populations by 13 informative and reliable primers. Of these 245 ISSR loci, 233 were polymorphic and the detected variations revealed a relatively high level of intraspecific genetic diversity. At the population level, the mean percentage of polymorphic loci (PPB) was 36.50%, while the average expected heterozygosity (He) and Shannon diversity index (Ho) were 0.1327 and 0.1972, respectively. At the species level (across all populations), PPB was 95.10%, while He and Ho were 0.3520 and 0.5195, respectively. A high Gst value (0.6247) indicated that there is significant differentiation among populations, which was confirmed by AMOVA analysis (Φst = 0.6420). Pairwise genetic identity (I) values among populations ranged from 0.6341 to 0.7675, with a mean of 0.7008. We propose that the high level of genetic differentiation may be the result of habitat fragmentation and limited gene flow (Nm = 0.1502). For effective in situ conservation and population restoration of C. hongheensis it will be important to maintain historical processes, including high outbreeding rates, sufficient gene flow, and large effective population sizes.     

AFLP analysis in pigeonpea (<Emphasis Type="Italic">Cajanus cajan</Emphasis> (L.) Millsp.) revealed close relationship of cultivated genotypes with some of its wild relatives

A total of 561 amplified fragment length polymorphism (AFLP) loci were generated and used to study the genetic diversity of wild and cultivated genotypes of pigeonpea. Out of 561 marker loci, 558 were polymorphic with an average of 76.12 bands. Analysis of molecular variation (AMOVA) revealed significant strong population structure when genotypes were structured according to continent of origin (F_ST = 0.22) also when structured into cultivated and wild genotypes (F_ST = 0.16). Maximum polymorphic loci were observed in cultivated species C. cajan (352) which is due to more number of genotypes used while, a minimum number of 45 polymorphic bands were obtained in C. acutifolius. Highest (0.291) average gene diversity was recorded in species C. mollis and lowest (0.079) average gene diversity was recorded in C. acutifolius. The 33 genotypes grouped into 14 clusters at 26% Jaccard’s similarity coefficients. Clustering analysis revealed most cultivated genotypes grouped into one major cluster while, the wild genotypes grouped into many clusters at 26% Jaccard’s similarity revealing greater diversity within wild species as compared to cultivated genotypes. From among the various cultivated genotypes studied, four genotypes BRG 3, ICP 7035, TTB 7 and ICP 8863 were molecularly and morphologically diverse and were used as parental genotypes to study nature of inheritance and to identify markers linked to sterility mosaic disease.     

Genetic diversity of <Emphasis Type="Italic">Guizotia abyssinica</Emphasis> (L. f.) Cass. (Asteraceae) from Ethiopia as revealed by random amplified polymorphic DNA (RAPD)

Genetic diversity of 70 populations of niger (Guizotia abyssinica) representing all its growing regions in Ethiopia was investigated using random amplified polymorphic DNA (RAPD) to reveal the extent of its populations genetic diversity. Ninety-seven percent of the loci studied was revealed to be polymorphic for the whole data set. The within population diversity estimated by Shannon diversity index and Nei gene diversity estimates was revealed to be 0.395 and 0.158, respectively. The extent of genetic variation of populations from major niger producing regions was significantly lower than that of populations from other regions; however, it is distributed regardless of altitude of growth. Genetic differentiation between populations was estimated with Shannon index as G^′ _ST (0.432), Nei’s G _ST (0.242) and AMOVA based F _ST (0.350) and appears to be equivalent to the average values calculated from various RAPD based studies on outcrossing species. Higher proportion of the variation detected by AMOVA resided within populations (64.58%) relative to the amount of variation among populations (35.42%). UPGMA cluster analysis showed that most of the populations were clustered according to their region of origin. However, some populations were genetically distant from the majority and seem to have unique genetic properties. It is concluded that the crop has a wide genetic basis that may be used for the improvement of the species through conventional breeding and/or marker assisted selection. Collection of germplasm from areas not yet covered and/or underrepresented is the opportunity to broaden the genetic basis of genebank collection.     

Genetic diversity assessment of <Emphasis Type="Italic">Gymnema sylvestre</Emphasis> (Retz.) R. Br. ex Sm. populations from Western Ghats of Maharashtra,India

Gymnema sylvestre (Retz.) R. Br. ex Sm., a rich source with gymnemic acid, has been used to treat diabetes since past 2000 years. In the current investigation, nomenclature, geographical distribution as well as morphological and genetic diversity of 22 G. sylvestre populations spread across of Western Ghats of Maharashtra has been reported. The genetic variability has been assessed using RAPD and ISSR molecular markers. The populations recorded high level of gene differentiation (G_ST = 0.41 based on ISSR) and gene flow (Nm = 0.92 based on RAPD). The high level of gene differentiation among the populations attributed to entomophilous pollination, wind seed dispersal, out crossing and anthropogenic activities.     

Resistance gene analog polymorphisms (RGAPs) in wild emmer wheat (<Emphasis Type="Italic">Triticum dicoccoides</Emphasis>) and their ecological associations

Using the 8 specific primer pairs based on the conserved motifs of plant resistance genes, the plant disease resistance gene analog polymorphisms (RGAPs) in 15 wild emmer wheat (Triticum dicoccoides) populations from Israel had been detected. High genetic variations at the RGAP loci were observed in T. dicoccoides populations. A total of 254 discernible bands were obtained among 115 accessions, and 192 bands (75.6%) were polymorphic. Each genotype had a unique banding profile, and the genetic similarity coefficient ranged from 0.094 to 0.862. In T. dicoccoides, the proportion of polymorphic loci (P), the genetic diversity (He) and Shannon’s information index were 0.756, 0.362 and 0.541, respectively. The proportion of polymorphic loci (P) per population averaged 0.732 (range: 0.515–0.932); genetic diversity (He) averaged 0.271 (range: 0.212–0.338); and Shannon’s information index averaged 0.404 (range: 0.310–0.493). The coefficients of genetic distance (D) among populations averaged 0.107 (range: 0.043–0.178), and the results of Mantel test (r = 0.168, P = 0.091) showed that the estimates of genetic distance were geographically independent. Neighbor-joining cluster analysis suggested that the genetic relationships of T. dicoccoides populations were associated with their ecogeographic distribution. The hierarchical analysis of molecular variance (AMOVA) and the coefficient of gene differentiation (G _ST ) values revealed that most of the variations were presented within populations, although significant differences among populations and regions were also detected. The values of P and Shannon’s information index were negatively correlated with the two factors: Tdd (day–night temperature difference) and Ev (mean annual evaporation), whereas they were positively correlated with one water factor: Rn (mean annual rainfall). The correlation matrix between He in the RGAPs and geographic variables contained 20 significant (P < 0.05) correlations. The present study established that T. dicoccoides in Israel had a considerable amount of genetic variations at RGAP loci at least partly correlated with ecological factors.     

Genetic erosion and in situ conservation of Lima bean (Phaseolus lunatus L.) landraces in its Mesoamerican diversity center

Lima bean (Phaseolus lunatus L.) is an important crop in traditional Mayan agriculture of the Yucatan Peninsula, Mexico, its Mesoamerican center of diversity. Genetic erosion in this species is currently a threat in this region out of 3 of 21 landraces dominate 71.24% of the cultivated area, and 12 are rare landraces grown only in 6.29%. Using 90 ISSR loci, we estimated the diversity and genetic relationships for 21 landraces to analyzing their risk of genetic erosion, and generate data for their in situ conservation. Total genetic diversity was high (h = 0.29), however it was lower than wild gene pool reported (h = 0.69). The abundant landraces had genetic diversity values lower (h = 0.13, I = 0.17) than the common (h = 0.26, I = 0.33) and rare landraces (h = 0.24, I = 0.27). However, the rare landraces are in a higher risk of genetic erosion due to local extinction. The cluster analysis showed no groups corresponding to morpho-phenological characteristics, geographic origin or traditional classification, which resulted from high inter-landraces gene flow levels. The molecular data confirmed that the domesticated Lima bean pool of the Yucatan Peninsula has a high risk of genetic erosion. If current tendencies in landrace cultivation continue, many will no longer be planted within two to three generations, with a consequent loss of their alleles. Programs urgently need to be established for in situ conservation of Lima bean landraces in this region.     

Genetic variation within and among populations of <Emphasis Type="Italic">Orychophragmus violaceus</Emphasis> (Cruciferae) in China as detected by ISSR analysis

Orychophragmus violaceus, a ground covering plant that is widely distributed in China. It has both high economical value in food, forage, health care and ornamental value in gardening. In this study, the genetic diversity of 245 individuals from nine populations in China were investigated using the inter-simple sequence repeat markers. Of the 100 primers screened, eight were highly polymorphic. Using these primers, 162 discernible DNA fragments were generated with 150 (92.59%) being polymorphic, indicating a pronounced genetic variation at the species level. Also, there were high levels of polymorphism at the population level with the percentage of polymorphic bands ranging from 85.74 to 90.06%. Analysis of molecular variance showed that the genetic variation within populations was 80.80% and the variance among populations was 16.43%. The Nei’s G _ST (0.1643) and gene flow among populations (Nm = 2.5760) revealed large gene exchanges among populations. O. violaceus belongs to out-crossing plants. It is capable of reproducing by self-sowing, thus can influence population genetic structure. The pronounced genetic variation within populations tells us that O. violaceus is a proper plant for genetic research and that there is great potential of breeding this species for gardening.     

AFLP similarities among historic Danish cultivars of fodder beet (<Emphasis Type="Italic">Beta vulgaris</Emphasis> L. subsp. <Emphasis Type="Italic">vulgaris</Emphasis>var. <Emphasis Type="Italic">rapacea</Emphasis> Koch)

Dead seeds of a fodder beet cultivar ‘Elvetham’ stored under ambient conditions since 1880 were compared to a homonymous sample preserved in an on-farm situation in Denmark. DNA was isolated from single seeds and successfully applied to Amplified Fragment Length Polymorphism (AFLP) analysis of the accessions. Six primer pairs were used to determine the similarity between the two accessions based on 112 polymorphic bands. Furthermore, similarity among seven cultivars of fodder beets representing the main types used in Scandinavia at the end of the 19th century was determined. This analysis was based on 152 polymorphic bands. Differentiation among the seven cultivars was determined to a mean G _ST value of 0.438, while G _ST between the two ‘Elvetham’ accessions was 0.266. A principal coordinate analysis based on jaccards similarity index illustrates that the two ‘Elvetham’ accessions are different from each other. The differentiation is higher than the value found between two separate ‘Eckerndorfer’ accessions. The results indicate that the cultivated accession has changed. Additionally, the value of applying old dead seed material for documentation in gene banks is demonstrated. During the analysis it was found that DNA isolated from seeds and leaves behaved differently in the AFLP process, however, the two fractions assigned to their common accession.     

Genetic diversity and structure of Ethiopian,Yemen and Brazilian C<Emphasis Type="Italic">offea arabica</Emphasis> L. accessions using microsatellites markers

Genetic diversity among 115 coffee accessions from the Coffea Germplasm Collection of IAC was assessed using SSR markers. The germplasm represents 73 accessions of Coffea arabica derived from spontaneous and subspontaneous plants in Ethiopia and Eritrea, species center of origin and diversity, 13 commercial cultivars of C. arabica developed by the Breeding Program of IAC, 1 accession of C. arabica cv. ‘Geisha’, 13 accessions of C. arabica from Yemen, 5 accessions of C. eugenioides, 4 accessions of C. racemosa and 6 accessions of C. canephora. Genetic analysis was performed using average number of alleles per locus (A), proportion of polymorphic loci (P), Shannon’s genetic index (H′ and G′_ST) and clustering analysis. All evaluated species were distinguished by a cluster analysis based on Jaccard’s coefficient. Differentiation between the cultivated plants of C. arabica and accessions derived from spontaneous and subspontaneous plants was observed. Spontaneous and subspontaneous accessions from Ethiopia were separated according to the geographical origin: east and west of the Great Rift Valley. Cultivated plants showed a low genetic diversity with a division in two groups: accessions from Yemen (H′=0,028) and Brazilian commercial cultivars (H′=0,030). The results agreed with previously reported narrow genetic basis of cultivated plants of C. arabica and supported the hypotheses about domestication of the species. This study also showed a significant genetic diversity among accessions from Ethiopia and Eritrea present in the Germplasm Collection of IAC. This diversity is specially observed in accessions from Sidamo (H′=0,143), Kaffa (H′=0,142) and Illubabor (H′=0,147) indicating their importance as source of genetic variability for coffee breeding programs.     

Molecular differentiation,diversity, and folk classification of “sweet” and “bitter” cassava (<Emphasis Type="Italic">Manihot esculenta</Emphasis>) in Caiçara and Caboclo management systems (Brazil)

This study focuses the inter-relationships among the men, the use, and the intra-specific cassava diversity, under the perspective of this crop evolutionary dynamics. The origin, the use and the current local management of varieties with high and low cyanogenic potential are important questions around cassava domestication. We collected 169 local varieties identified as “sweet” or “bitter” cassava by traditional farmers from Atlantic Forest and Amazon (Medium Negro River Basin), Brazil. Using a population genetics and an ethnobotany approach, the diversity and the genetic structure of cassava were evaluated. We found a total of 115 vernacular names, and in the Atlantic Forest sample the average genetic diversity (H _S = 0.654) was higher for the sweet varieties than for bitter ones (0.582). The genetic differentiation coefficient (R _ST), used to estimate the diversity among groups, was 0.057 (P < 0.001), indicating that the divergence between the two groups is low. We obtained a low correlation between the morphological and genetic distances, and the congruence was high when the ethnoclassification and the genetic structure were considered. We discuss the adaptive advantages of the sweet varieties use, the current socio-economic changes in bitter varieties use, and the ecological history of these variety groups.     

Analysis of population substructure,genetic differentiation and phylogenetic relationships among selected Asiatic <Emphasis Type="Italic">Vigna</Emphasis> Savi species

Random amplified polymorphic DNA markers were used to study sub-structure and genetic differentiation amongst 31 populations (seven cultivated and 24 wild populations) belonging to 14 Asiatic Vigna species. Ten pre-selected RAPD primers generated 152 polymorphic amplification products. Estimates of polymorphism indices were higher for the wild taxa in comparison to the cultivated forms. F_ST values between populations ranged from 0.111 to 0.801 and Nei’s genetic diversity values between and within species varied from 0.26 to 0.70 and 0.04 to 0.56 respectively. The high F_ST and F_CT values indicated strong subdivision of populations and high differentiation among species. Analysis of molecular variance was performed by grouping the populations conforming to specific species. AMOVA was also performed separately to better resolve the differentiation of species within mungo–radiata complex. Molecular phylogenetic relationships amongst the species of radiata–mungo complex; namely, black gram (V. mungo (L.) Hepper), green gram (V. radiata (L.) Wilczek), V. radiata var. sublobata, V. radiata var. setulosa, V. mungo var. silvestris and V. hainiana, were studied through cluster analyses. Two distinct groups were recognized within the complex, with population samples of V. hainiana forming one cluster. Further, V. hainiana appeared to be equidistant to both V. radiata and V. mungo.     

Reproductive biology and characterization of <Emphasis Type="Italic">Allanblackia parviflora</Emphasis> A. Chev. in Ghana

Allanblackia parviflora A. Chev. (Clusiaceae Lindley) is an indigenous tree species which is found in the rain forest regions of Ghana. It is a potential candidate fruit tree species being introduced in agroforestry systems. Information on genetic diversity, reproductive biology and fruit yield are not known. Field expeditions to seven populations of Allanblackia parviflora in Ghana were undertaken in 2003–2006 during which fruits were collected from 109 trees for characterization. The species was found to be dioecious. The colour of flowers varied from whitish to reddish. No ecological differences in number of fruits per tree, fruit shape and seed health were observed. However, large variations in fruit size and shape were observed among individual trees sampled. A high heritability (h ² = 0.822) in fruit size and genetic gain (G = 20.1%) in fruit size for selection of trees with above average fruit size were observed. A positive significant correlation was observed between fruit size and seed weight (R = 0.54, P < 0.05; Fig. 6). The results suggest that selection and cloning of trees with large fruits could lead to higher yield of seeds for oil production.     

RAPD-based assessment of genetic relationships among and within American ginseng (Panax quinquefolius L.) populations and their implications for a future conservation strategy

American ginseng (Panax quinquefolius) is a native North American medicinal plant that is becoming increasingly vulnerable despite government harvest restrictions. To better understand the genetic diversity and gene flow of American ginseng, we studied RAPD variation in cultivated and wild populations. Classical and Bayesian analogues of genetic diversity statistics were estimated in seven wild and two cultivated populations. The wild populations were more highly structured (G _stβ  = 0.41) than the cultivated populations (G _stβ  = 0.24). The genetic diversity within populations ranged from H _eβ  = 0.05 to 0.38. Based on genetic pairwise distances, six of the wild populations clustered with the locally-derived cultivated population, while one wild population was more similar to the non-local cultivated population than the local populations. This wild population was highly diverse (P = 1.0; U = 1.0) suggesting that it was supplemented from exotic seed. A set of eight RAPD markers was identified that differentiated plants of local and non-local origin. As a conservation strategy, we recommend that regional gene banks be established based on molecular and geographic diversity to preserve the locally adapted germplasm. These regional gene banks would serve as a conservation tool and also provide a source of genes for genetic improvement of cultivated ginseng.     

Microsatellite diversity and effective population size in a germplasm bank of <Emphasis Type="Italic">Hymenaea courbaril</Emphasis> var. <Emphasis Type="Italic">stilbocarpa</Emphasis> (Leguminosae), an endangered tropical tree: recommendations for conservation

Deforestation in southeast Brazil has led to the extinction of Hymenaea courbaril var. stilbocarpa and ex situ conservation has been established. In this study, the levels of genetic diversity and the effective population size of H. courbaril in a germplasm bank were investigated using six nuclear microsatellite loci. A total of 79 and 91 alleles were found in 65 seed-trees and their 176 offspring, respectively. Offspring have a higher average number of alleles per locus (A = 15.2) than seed-trees (A = 13.2), but lower observed heterozygosity (offspring: H _o = 0.566; seed-trees: H _o = 0.607). The estimate of outcrossing rate shows that the study population is perfectly outcrossed (t _m  = 0.978, P > 0.05). Significant deviations from random mating were detected through mating among relatives and correlated matings. The average variance in effective population size for each family was 2.63, with a total effective population size retained in the bank of 170.1. These results confirm that the preserved population of H. courbaril retains substantial genetic variability. Moacyr Antonio Mestriner and Ana Lilia Alzate-Marin—CEEFLORUSP Members.     

Genetic variability in wild populations of <Emphasis Type="Italic">Prunus divaricata</Emphasis> Ledeb. in northern Iran evaluated by EST-SSR and genomic SSR marker analysis

A population genetic analysis based on eight genomic SSR markers and three EST-SSR (expressed sequence tags) markers developed in peach (Prunus persica (L.) Batsch) and Japanese plum (Prunus salicina Lindl.) was carried out in 12 wild populations of cherry plum (Prunus divaricata Ledeb.) sampled along the Iranian coast of the Caspian Sea. A total of 184 alleles (3–31 per locus) were detected with a mean value of 16.7 alleles per locus. None of the loci or populations showed deviation from Hardy–Weinberg equilibrium, and all markers proved to be unlinked. The mean values for the observed and the expected heterozygosity were 0.66 and 0.73, respectively. There was very little genetic differentiation among populations, as was indicated by low overall values of Wright’s F_ST (0.03) and Nei’s G_ST (0.08). An analysis of molecular variance (AMOVA) showed that 96.8% of the total variance was attributable to differences between individuals within populations. Genetic and geographic distances were nevertheless positively correlated, as evidenced by a Mantel test. The high level of genetic diversity and the apparent lack of genetic structure in wild P. divaricata may be attributed to frequent long distance gene flow through frugivorous birds and possibly humans, as has been documented for other Prunus species.     

A study of genetic diversity of sesame (<Emphasis Type="Italic">Sesamum indicum</Emphasis> L.) in Vietnam and Cambodia estimated by RAPD markers

Sesame (Sesamum indicum L.) is a traditional oil crop cultivated throughout South East Asia. To estimate the genetic diversity of this crop in parts at the region, 22 sesame accessions collected in Vietnam and Cambodia were analyzed using 10 RAPD markers. The 10 primers generated 107 amplification products of which 88 were polymorphic fragments (83%). Genetic diversity of all populations was H_t = 0.34 when estimated by Nei’s genetic diversity and species diversity was H′_sp = 0.513 when estimated by Shannon diversity index. Genetic distance ranged from 0.03 to 0.43, with a mean genetic distance of 0.23. The unweighted pair group method with arithmetic averages (UPGMA) cluster analysis for the 22 accessions divided the material in four groups. The dendrogram revealed a clear division among the sesame accessions based on their geographical region. Interestingly, some geographically distant accessions clustered in the same group, which might indicate the human factor involved in the spreading of sesame varieties. The high level of polymorphism shown suggests that RAPD techniques can also be useful for the selection of parents in sesame (Sesamum indicum L.) breeding program and for cultivar differentiation.     

A Preliminary Comparative Evaluation of Genetic Diversity between Chinese and Japanese Wild Soybean (<Emphasis Type="Italic">Glycine soja</Emphasis>) Germplasm Pools using SSR markers

The wild soybean, an annual self-pollinating plant, is the progenitor of soybeans and is extensively distributed in the Far East of Russia, the Korea peninsula, China and Japan. Geographically, Japan is surrounded by sea and insulated from China. We preliminarily evaluate whether the Japanese and Chinese wild soybean germplasm pools are genetically differentiated from each other using SSR markers. The results showed that the two pools have great genetic differentiation. Some loci presented obvious differences in mean genetic divergence (G_ST) value between the two pools. The G_ST among the geographic regions in China was higher than that in Japan. The average within-geographic region gene diversity values (H_S) in the two pools were completely identical and thus the genetic difference between the two pools was mostly attributed to the relatively high level of between-geographic region gene diversity (D_ST) in China. We suggest that Japanese and Chinese wild soybeans should be comparatively independently evolving in phylogeny.     

A Tal-Ph<Superscript>I</Superscript> wheat genetic stock facilitates efficient alien introgression

The genetic stock Chinese Spring Ph^I (refer as CS-Ph^I hereafter) with the Ph ^I gene (Ph gene inhibitor, introduced from a high-pairing accession of Aegilops speltoides) was crossed as a male parent to a Tai-gu genic male-sterile wheat with the Tal gene and backcrossed once to CS-Ph^I to develop the Tal-Ph^I genetic stock. The Tal-Ph^I stock, CS-Ph^I as well as Chinese Spring (CS), were test-crossed using Aegilops peregrina (syn. Aegilops variabilis) to test the effectiveness of the Ph ^I gene inducing homoeologous chromosome pairing in the Tal-Ph^I stock. At meiotic I(MI) of pollen mother cells (PMCs), the average chromosome pairing of the TC₁ testcrosses of TalCSPh^IC_08–4/Ae. peregrina, TalCSPh^IC_11–5/Ae. peregrina and CS/Ae. peregrina was 26.81 I + 3.64 II + 0.33  + 0.07 III + 0.01 IV, 24.75 I + 4.58 II + 0.25  + 0.21 III + 0.07 IV and 32.25 I + 1.38 II, respectively. These data indicated that the Ph ^I gene could promote homoeologous chromosome pairing in the Tai-gu male sterile background. In order to verify the introgression of the chromatin from Ae. speltoides into CS in the three CS-Ph^I lines, a total of 79 SSR primers located on group-3 chromosomes were used for PCR analysis using the genomic DNA of CS, Ae. speltoides and the three CS-Ph^I lines. Two markers Xwmc505 _-110 and Xwmc674 _-160 amplified S genome-specific fragments from Ae. speltoides in lines Ph^IC_04–13 and Ph^IC_11–5, providing molecular evidence for the introgression of Ae. speltoides-specific chromatin in the two lines. Furthermore, some 3D-specifc SSR markers were missing in line Ph^IC_04–13, indicating there might be a deletion of chromosome 3D in this line. In further experiments, a BC₁ population was produced from the cross of Tal-Ph^I/Triticum durum-Dasypyrum villosum amphiploid (AABBVV)//CS-Ph^I, and the progenies were further screened for chromosome recombination by GISH analysis. A homozygous translocation line T5VS·5VL-5DL was identified from the BC₁F₂ by genomic in situ hybridization, C-banding and SSR analysis. The results of the present study demonstrate the Tal-Ph^I is a useful genetic stock for transferring alien genes into common wheat.