Characterization and vector relation of a serologically distinct isolate of tobacco rattle tobravirus (TRV) transmitted byTrichodorus similis in northern Greece

A virus isolated from diseased tobacco plants growing in Macedonia, northern Greece, had host range and physico-chemical properties typical of a tobravirus. Although it was serologically unrelated to any of the ten tobravirus isolates tested, it reacted in spot hybridization tests with a probe derived from RNA-1 of tobacco rattle virus (TRV) strain SYM. Therefore, the isolate probably represents a previously undescribed serotype of TRV. Male, female and juvenileTrichodorus similis nematodes recovered from the rhizosphere of the diseased tobacco plants transmitted TRV in each of three laboratory experiments. In two of these experiments 50% and 54%, respectively, of the nematodes transmitted virus toPetunia hybrida bait plants, whereas only 18% transmitted virus toNicotiana tabacum plants in a third test. Ultrathin sections of the feeding apparatus of individual nematodes, which had transmitted virus, were examined by electron microscopy. Virus particles were observed, retained as a monolayer in the apices of the oesophageal lumen and as a group of particles within a matrix in the open part of the lumen.     

Tobacco rattle virus serotypes and associated nematode vector species of Trichodoridae in the bulb-growing areas in the Netherlands

Soil samples from the coastal bulb-growing areas in the provinces of North- and South-Holland and the North-East Polder in the Netherlands were examined for trichodorid nematodes and tobacco rattle virus (TRV) serotypes. At least one of a total of eight species of Trichodoridae, of whichParatrichodorus pachydermus was most prevalent, was found in 93% of the samples from the provinces of North- and South-Holland and TRV, including four serotypes, was obtained from 49% of these samples. In the North-East Polder one of three species of trichodorids, of whichP. teres occurred most frequently, was present in 72% of the samples, and TRV of one serotype was obtained from 28% of these samples. The TRV isolates recovered from these samples reacted serologically with one of four antisera to strains of TRV. Virus transmitted byP. pachydermus reacted to the PRN-, byTrichodorus viruliferus to the RQ-, byP. teres to the N5- and byT. similis, to the TS-antiserum, respectively.     

Morphological and molecular characterisation of Trichodorus golestanensis (Nematoda: Trichodoridae), a new species from Iran

Several species of trichodorid nematodes cause economically important disease on plants. Trichodorus comprises most of the trichodorid species. Trichodorus golestanensis n. sp. is described from a forest park in northern Iran. The new species belongs to the T. lusitanicus morpho-species group and is characterized in male by three ventromedian cervical papillae of which two at level of onchiostyle region, three ventromedian precloacal supplements, the posterior one just anterior to retracted spicules and ventrally curved spicules with mid-blade indentation provided with a few bristles. Females are distinguished by well developed triangular vaginal sclerotized pieces in lateral optical view, a rhomboid-shaped vagina and a transverse slit-like vulva in ventral view. Molecular analysis using the sequence of D2-D3 expansion segment of 28S rDNA differentiated the new species and confirmed the relationships of T. golestanensis n. sp. with T. andalusicus and T. asturanus. The sequences of D2-D3 regions were also provided for previous trichodorid records from Iran T. gilanensis, P. teres and N. minor together with discussion of their relationship.     

Cultivation factors influencing spraing in potato-a statistical analysis

In an attempt to study the effects of cultivation factors on the incidence of spraing in potato, on the presence of tobacco rattle tobravirus (TRV) and potato mop-top furovirus (PMTV), and on the densities of trichodorid nematodes in field soils, a statistical analysis was conducted based on field records provided by a Swedish potato crisp industry. The factors studied were crop rotation, precipitation (irrigation inclusive), planting time, fertilization, plant-available P, K and B, soil texture and soil pH. The data were collected for 1979-1987, representing 50 farms (198 fields) in southern Sweden. A correlation was found between TRV infectivity in the autumn and planting time of the potato crop. Thus, late planting was correlated with lower frequency of TRV. By ANOVA test of 5 years of preceding crops, a possible spraing increase was indicated when numbers of potato or barley crops increased in the crop rotations. A possible spraing decrease was indicated when the share of wheat increased. High incidence of spraing, and high densities of trichodorid nematodes, were both correlated with low values of plant-available potassium, K_AL, in soil.     

Viruses of the tobacco rattle virus group in Northern Italy: Their vectors and serological relationships

Four species ofTrichodorus have been found in northern Italy, viz.Trichodorus viruliferus, T. teres, T. nanus and an undescribed species. In seven cases tobacco rattle virus (TRV) was isolated from soil samples by means of bait seedlings and in three of these cases the vector was found to beT. viruliferus. The seven virus isolates reacted with an antiserum against a Dutch TRV isolate and were divided into two groups according to their reaction with this serum. One isolate from each group was subjected to a more detailed examination. Of these, one was found to be closely related to a Dutch isolate from gladiolus with notched leaf symptoms, while the other showed a distinct relationship to the pea early-browning virus found in Britain. One of the isolates proved to be more closely related to the Dutch TRV than is the Dutch gladiolus isolate.     

Detection of tobacco rattle virus in nematodes by reverse transcription and polymerase chain reaction

An assay, based on amplification of cDNA synthesized from genomic viral RNA, has been developed to detect tobacco rattle virus in infected plant material and viruliferous nematodes. A range of different TRV strains could be detected using the procedure developed. The presence of one to three viruliferous nematodes in a nematode suspension was sufficient for the detection of TRV. The minimum amount of purified virus detectable in the assay was 15 fg, indicating an increased sensitivity of the PCR-based assay as compared to serological detection methods, like ELISA. A dot-blot hybridization procedure was developed for the detection of the PCR products, making agarose gel electrophoresis dispensable.     

Acquisition and subsequent transmission of tobacco rattle virus isolates by Paratrichodorus and Trichodorus nematode species

Isolates of the PRN serotype of tobacco rattle virus (TRV) were transmitted with different efficiencies by the nematode vectorParatrichodorus pachydermus. Virus isolates which belonged to other serotypes were not acquired and/or transmitted by this vector, nor were PRN serotype isolates which had been obtained from naturally infected potato plants and maintained by mechanical transmission in the glasshouse for several years. PRN serotype TRV isolates from the Netherlands or from Scotland were equally well transmitted by initially virus-freeP. pachydermus populations from either country. Allowing a naturally viruliferous nematode population access for 3 weeks to uninfected or TRV-infected roots resulted in an increased proportion of the trichodorid population transmitting TRV.     

Molecular diagnosis of trichodorid species from Portugal

A PCR‐RFLP assay was developed for the identification of trichodorid nematodes belonging to Nanidorus, Paratrichodorus and Trichodorus genera. Using the variability of the 18S SSU rDNA gene, this method provides a new molecular diagnosis tool which allows identification within mixed samples of trichodorid and non‐trichodorid species, differentiation of juveniles, and represents an alternative to the difficult and time consuming phenotyping of similar species. Based on the alignment of previously obtained 18S rDNA nucleotide sequences of trichodorids from Portugal, a pair of selective primers was designed in conserved regions to allow the amplification of a variable region located at the 3′ end of the gene in all known Portuguese species. The 615 bp PCR product showed nucleotide variability enabling the generation of restriction fragment patterns which were consistent among populations of the same species but allowed discrimination of trichodorids at the species level. The proposed protocol was tested and proved effective with 12 trichodorid species from Portugal (N. minor, P. allius, P. anemones, P. divergens, P. hispanus, P. pachydermus, P. porosus, T. beirensis, T. lusitanicus, T. primitivus and two other Trichodorus species, A and B) and six non‐indigenous trichodorid populations (N. minor, P. allius, P. anemones, P. pachydermus, P. porosus and T. primitivus).     

南海口岸进境林木种苗线虫检疫情况分析

本文汇总了2008～2010年南海口岸进境林木种苗的线虫截获情况,共截获15科26属超过40种植物寄生线虫,其中检疫性线虫有7种,分别为短体线虫(非中国种)Pratylenchus Filipjev(non-Chinese species)、毛刺线虫属(传毒种类)Trichodorus Cobb(The species transmit viruses)、根结线虫(非中国种)Meloidogyne Goeldi(non-Chinese species)等;根据携带线虫状况分析了检疫性线虫的截获情况,提出了防止危险性线虫入境、扩散措施,为口岸防止线虫入境提供借鉴。     

Molecular characterization and diagnostics of stubby root and virus vector nematodes of the family Trichodoridae (Nematoda: Triplonchida) using ribosomal RNA genes

Plant parasitic nematodes of the family Trichodoridae cause substantial yield losses in many agricultural crops. Rapid and accurate identification of trichodorids to the species level is critical for selection of appropriate measures for control. This study analysed 99 sequences of the D2–D3 expansion segments of the 28S rRNA gene and 131 sequences of the 18S rRNA gene from the stubby nematodes belonging to the genera Nanidorus, Paratrichodorus and Trichodorus. Species delimiting was based on the integration of morphological identification, which is not provided in the present article, and molecular‐based phylogenetic inference and sequence analysis. Twenty‐two valid species and several species complexes were identified among nematodes included in the analysis. PCR‐RFLPs of the partial 18S rDNA and the D2–D3 expansion segments of the 28S rDNA were tested and proposed for identification of these nematodes. Gel PCR‐RFLP profiles and tables with restriction fragment lengths for several diagnostic enzymes are provided for identification. Some problems of taxonomy and phylogeny of nematodes of the family Trichodoridae are also discussed.     

The transmission by nematodes of tobraviruses is not determined exclusively by the virus coat protein

The coat protein gene of the nematode non-transmissible, SP5 isolate of pea early-browning tobravius was replaced with that of the highly nematode transmissible, PPK20 isolate of tobacco rattle tobravirus. Plants were infected with the recombinant virus when mechanically inoculated and the virus invaded the plants systemically. However, although the PPK20 isolate of TRV was transmitted by nematodes from these plants, the recombinant virus was not transmitted. Therefore, the virus coat protein is not the exclusive determinant of nematode transmission.     

较小拟毛刺线虫不同群体的形态及分子特征比较研究

毛刺类线虫系一类重要的植物外寄生线虫,其内包括一些可传播植物病毒的种类。本研究基于形态学和rDNA分子特征从我国海南儋州、云南呈贡和昆明、福建厦门等植物根围土壤样品中分离鉴定出8个较小拟毛刺线虫(Paratrichodorus minor)群体;通过对种群数量较大的海南儋州群体与福建厦门群体的形态及测量值比较,发现不同地理群体间主要形态测量值存在一定差异;各群体18S RNA区、r DNA-ITS1区、r DNA-ITS2区和28S RNA基因中D2D3区序列与Gen Bank已登录的较小拟毛刺线虫不同群体相应序列(AJ438053、AJ438054及AJ438056;KJ934126;JN123380和JN123381;JN123396和KJ513001)相似度分别介于99.1%~99.9%、95.8%~96.3%、99.5%~99.8%和99.4%~99.9%。对上述较小拟毛刺线虫群体r DNA-ITS1区、r DNA-ITS2区和28S RNA基因中D2D3区序列比较和酶切分析显示,该3段序列在较小拟毛刺线虫种内群体间都较为保守。其中28S RNA基因中D2D3区序列在种内群体稳定,种间群体有明显的差异,系毛刺类线虫鉴定一较好的分子靶标。有关结果对较小拟毛刺线虫的鉴定及鉴别有直接的指导意义。     

Pea early-browning tobravirus

A disease of pea caused by pea early-browning virus was first described in the Netherlands, and shortly afterwards was reported from England. The virus has since been reported from several other European countries, and also from North Africa. It can systemically infect crop legume species and the disease is locally important in pea in the Netherlands and England. The virus, a member of the Tobravirus genus, is transmitted through sandy or light-textured soils by species of trichodorid nematodes, and also through seed of pea and faba bean. Seed transmission is the most probable means of virus spread, especially over long distances, to previously uninfested soils. Aspects of the disease including symptoms, soil and seed transmission, detection, resistance and control, and characteristics of the pathogen, are reviewed.     

Virus-vector nematodes in cereals and fruit crops in Spain

Studies on nepoviruses and tobraviruses, and their relationships with their associated vector nematodes, are scarce in Spain. However, virus disease symptoms have often been detected and their nematode vectors are widespread in Peninsular Spain. Nepovirus vector nematodes (Longidorus attenuatus, L. coespiticola, L. elongatus, L. macrosoma, Xiphinema coxi, X. diversicaudatum, X. index, X. italiae, X. pseudocoxi and X. vuittenezi) have been found associated with fruit and cereal crops. All are also widespread in other crops and uncultivated areas, together with X. rivesi, which has not yet been found associated with fruit and cereal crops in Spain. Tobravirus vectors have been less studied in Spain. Of the five recorded species, Paratrichodorus minor and Trichodorus primitivus are present on maize and wheat respectively. The geographical and host distribution of these nematodes are given and their ecological characteristics are discussed.     

The predicted impact of possible climatic change on virus-vector nematodes in Great Britain

Data extracted from surveys of plant-parasitic nematodes in Great Britain allowed relatively detailed maps of the geographical distribution of various longidorid and trichodorid virus-vector nematode species to be produced. These distributions are related to long-term monthly mean temperature. Recently published figures for climate change were applied to the distribution data. A potential increase in nematode associated problems due to climate change using examples of existing published data are examined and discussed.     

Analysis of genetic relations between <Emphasis Type="Italic">Broad bean wilt virus 1</Emphasis> and <Emphasis Type="Italic">Broad bean wilt virus 2</Emphasis>

We determined the complete nucleotide sequence of RNA-1 and the 5-terminal region of RNA-2 from Broad bean wilt virus 1 (BBWV-1) isolate PV132. This report is the first analysis of the genome organization of BBWV-1. We also determined the complete nucleotide sequence of RNA-1 from Broad bean wilt virus 2 (BBWV-2) isolate IP and analyzed the genetic relations between BBWV-1 and BBWV-2. Similar to the BBWV-2 isolates, both RNAs of PV132 encoded a single large polyprotein, which was predicted to contain some functional proteins in a manner similar to those of comovirus. With respect to the deduced amino acid sequences of the mature proteins, PV132 and IP had only 20%–40% homology to comovirus. On the other hand, IP was 73%–98% homologous to BBWV-2 isolates, but PV132 was 39%–67% homologous to the isolates. Although the extent of the homologies differed, the homologies were limited between BBWV-1 and BBWV-2 not only for the coat protein but also for the other proteins. These results clearly support the placement of BBWV-1 and BBWV-2 in the genus Fabavirus as distinct species, proposed on the basis of double immunodiffusion tests.The nucleotide sequence data reported are available in the DDBJ/EMBL/GenBank databases under the accession numbers AB084450 (RNA-1 of isolate PV132), AB084451 (RNA-2 of isolate PV132), and AB023484 (RNA-1 of isolate IP)     

The effect of DD and dazomet treatments on nematode populations at various depths in the soil and on the transmission of soil-borne tobacco rattle virus to gladiolus

The relation between log dosage of DD injected at 15 cm depth or of dazomet applied to the soil surface (all in November 1971) and probit mortality ofRotylenchus and trichodorids in the top 20 cm of a field on sandy soil was found to be linear. Dosage increase efficiencies of both chemicals against both nematode species were medium to high. Superficial application of dazomet was very effective against the nematodes that would have survived if only a low dosage of DD had been injected at 15 cm depth. Injection of 40 ml or 80 ml DD per m² at 15 cm depth killed all nematodes between 20 cm and 60 cm deep. Gladiolus planted in the spring of 1972 grew better, flowered earlier and produced more weight of corms on treated than on untreated plots. The poor growth on the untreated plots cannot be ascribed to direct damage by nematodes or to the effect of TRV transmitted to the plants by the viruliferous trichodorids occurring in these plots in high densities. Symptoms of TRV infection in plants grown in 1973 from the corms harvested in the 1972 experimental field showed that only DD treatments had reduced the rate of TRV transmission considerably. However, even the highest dosages of DD had only reduced it from 26% (on untreated plots) to about 8%. Most probably, this residual TRV infection was due to transmission by trichodorids that had survived in soil layers below 60 cm depth. Therefore, soil treatment with nematicides, cannot prevent TRV transmission to gladiolus sufficiently where viruliferous trichodorids occur at great depths, as is the case in many sandy soils having a low water table.     

Multiplex Polymerase Chain Reaction Identification of Single Individuals of the Longidorid Nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi, and X. italiae Using Specific Primers from Ribosomal Genes

ABSTRACT The species X. index, X. diversicaudatum, X. vuittenezi, and X. italiae are established (E) or putative (P) vectors of Grapevine fanleaf virus (GFLV) (E), Arabis mosaic virus (E), Grapevine chrome mosaic virus (P), and GFLV (P) nepoviruses of grapevine, respectively. All four species are very closely related taxonomically and their low field densities make them difficult to identify from morphological and morphometrical diagnostic characters when only single or few individuals are detected. To improve diagnostic accuracy, a simple method was developed. The internal transcribed spacer 1 (ITS1) region spanning the 18S and 5.8S ribosomal genes was sequenced in one population of each species using two conserved primers from these genes. The ITS1 fragments were 1,132 bp (X. vuittenezi), 1,153 bp (X. index), 1,175 bp (X. diversicaudatum), and 1,190 bp (X. italiae), i.e., a difference of over 5% between the extremes. The sequence variability made it possible to design species-specific internal sense primers that amplified, in combination with the same antisense ITS1 primer, a single signature fragment (340 bp for X. index, 414 bp for X. italiae, 591 bp for X. vuittenezi, and 813 bp for X. diversicaudatum). Tests with DNA from a single adult or juvenile nematode confirmed the specificity of the primers from diverse isolates or populations. The primers were successfully used in a multiplex test for the reliable detection of two to four mixed species, each represented by a single individual. This multiplex-based diagnostic tool will be particularly useful for successful nematode management practices in vineyards.