The Biology of the Larks (Alaudidae) of the Kalahari Sandveld

Pectoral spines from 750 Clarias gariepinus (Pisces:Clariidae) from Lake Sibaya were used for age and growth determinations. The spines have clear rings in the bone matrix. Rings formed on otoliths, vertebrae and opercula were less useful. A close correlation between ages determined from length frequency data and ages obtained by back-calculation of lengths for different ring classes exists. Spine rings are laid down annually, except in the first year. C. gariepinus in Lake Sibaya grow rapidly and remain in good condition to a length of about 500 mm (age 3+ years) but of the larger catfish, few exceed 650 mm (7+ years). Males grow slightly faster than females, and modal sizes are 580 - 590 mm TL, and 540 - 550 mm TL. Over one third of the adult population measures between 500 and 600 mm TL due to the sharp deceleration of growth rate after 500 mm TL. Modal length and growth rate of Sibaya catfish is equal to that of other C. gariepinus populations, but the number and condition of larger individuals is lower, probably because of inadequate food resources in deep water.     

Factors affecting the breeding success of the African Black Oystercatcher (Haematopus moquini): a perspective on protection and food availability

Breeding success (fledglings pair^?1 y^?1) of the Red-listed African Black Oystercatcher (Haematopus moquini) is highly variable, both spatially and temporally. Despite a diversity of natural factors causing this variability, there is evidence that two anthropogenic factors, i.e. disturbance and an introduced mussel (Mytilus galloprovincialis), are having an impact on the local breeding success of this species. Using a data set comprising 87 site-years of nest-monitoring data across most of the species’ breeding range, we analysed the extent and causes of variability in breeding success. Breeding success differed across three population categories defined by varying levels of human disturbance: island populations, protected mainland populations, and unprotected mainland populations. Differences in breeding success between island populations and protected mainland populations were likely due to differing exposure to predators; however, differences between protected and unprotected mainland populations were unlikely caused by this as both experience equivalent predation levels (although from different predators). Protection only improved the breeding success of oystercatchers in very high-quality habitats (with a high biomass of alien mussels), and where populations were ‘released’ from high levels of human disturbance. In unprotected mainland areas, human activity impacted on the breeding success of local populations primarily through predation of small chicks by uncontrolled dogs, and by rising tides drowning chicks that were hiding from human disturbance. The findings of this study note the potential conservation dilemma resulting from an invasive species improving the conservation status of a Red-listed species, and encourage the implementation of restricted sites in high-quality habitats with high breeding pair densities.     

Fish population changes in the Sanyati Basin,Lake Kariba,Zimbabwe

Large-fish population changes in the Sanyati Basin of Lake Kariba between 1960 and 1975 are evaluated and discussed. The early lake population following closure of the dam wall in 1958 was similar to the pre-impoundment riverine population with Labeo spp., Distichodus spp., Clarias gariepinus and two characid species dominating gill-net catches. Exceptions were mormyrids, scarce in the new lake although abundant in the river, and Oreochromis mortimeri, scarce in the river but expanding rapidly in the lake. Productivity in the new lake in terms of ichthyomass relative to later years was high. In later years following closure several of the early abundant mostly potamodromous species declined rapidly (C. gariepinus, Labeo spp., Distichodus spp.,) and by 1975 they were unimportant. Mormyrids, cichlids and two silurid species increased significantly in catches as did the characin, Hydrocynus vittatus; the latter as a result of the expansion of the freshwater sardine population, from 1970. While early populations were essentially herbivorous later populations were largely insectivorous/molluscivorous. Concomitant with these changes new species appeared, while a few disappeared. Possible sources of origin of the new arrivals are discussed. Salient features of the entire evolutionary process are summarized, while some of the lessons leamt from Kariba, and a few recommendations arising from this, are listed in the conclusion.     

Preliminary studies of chemical immobilization of captive juvenile estuarine (Crocodylus porosus) and Australian freshwater (C. johnstoni) crocodiles with medetomidine and reversal with atipamezole

ObjectiveTo establish a safe, reliable and reversible immobilization protocol for captive juvenile crocodiles.Study designProspective, randomized, clinical study.AnimalsThirty male estuarine crocodiles (body mass 1–12.1 kg) and 10 male Australian freshwater crocodiles (body mass 4.1–12.8 kg).MethodsAn optimized dose of medetomidine (0.5 mg kg^?1) was administered intramuscularly (IM) into the tail (Group 1; n = 5), pelvic limb (Group 2; n = 5) and thoracic limb (Groups 3 and 4; n = 5 in each group) of estuarine crocodiles weighing 3–12.1 kg. Their heart and respiratory rates and degree of immobilization were monitored every 15 minutes until recovery and daily thereafter for 3 subsequent days. In Group 4 (n = 5), medetomidine was antagonized with an optimized dose of atipamezole (2.5 mg kg^?1) given IM into the thoracic limb and time to recovery recorded. The effects of increasing doses of medetomidine given IM in the thoracic limb (n = 4) and intravenously (n = 6) were determined in 1–2 kg estuarine crocodiles. Australian freshwater crocodiles (4.1–12.8 kg) were administered medetomidine IM into the thoracic limb in divided doses at 0.5 mg kg^?1 (n = 5) and 0.75 mg kg^?1 (n = 5) and similarly monitored.ResultsImmobilization was achieved only in the estuarine crocodiles >3 kg and when medetomidine was administered into the thoracic limb. Immobilization was achieved within 30 minutes and the duration of immobilization lasted approximately 90 minutes. Immobilization in estuarine crocodiles was readily reversed with atipamezole. A dose of 0.75 mg kg^?1 was required to immobilize Australian freshwater crocodiles and the onset of immobilization was longer and the duration shorter than seen in the estuarine crocodiles. The heart and respiratory rates of all immobilized animals decreased significantly and arterial blood pressure became undetectable in the animals in which it was measured.Conclusions and clinical relevanceMedetomidine administered in the thoracic limb of captive estuarine and Australian freshwater crocodiles, ranging from 3 to 12.8 kg, provides a predictable onset and duration of immobilization sufficient for physical examination, sample collection, short minor procedures and translocation of the animals. Atipamezole administered in the thoracic limb results in complete reversal of the effects of medetomidine in the estuarine crocodile and a rapid return to normal behaviour.     

Founder representation and effective population size in old versus young breeds—genetic diversity of Finnish and Nordic Spitz

Finnish Spitz is 130‐year‐old breed and has been highly popular in Finland throughout its history. Nordic Spitz is very similar to Finnish Spitz by origin and use, but is a relatively recent breed with much smaller population size. To see how breed age and breeding history have influenced the current population, we performed comprehensive population genetic analysis using pedigree data of 28,119 Finnish and 9,009 Nordic Spitzes combined with genomewide single nucleotide polymorphism (SNP) data from 135 Finnish and 110 Nordic Spitzes. We found that the Finnish Spitz has undergone repeated male bottlenecks resulting in dramatic loss of genetic diversity, reflected by 20 effective founders (f_a) and mean heterozygosity (Hz) of 0.313. The realized effective population size in the breed based on pedigree analysis () is 168, whereas the genetic effective population size (N_eg) computed the decay of linkage disequilibrium (r²) is only 57 individuals. Nordic Spitz, although once been near extinction, has not been exposed to similar repeated bottlenecks than Finnish Spitz and had f_a of 27 individuals. However, due to the smaller total population size, the breed has also smaller effective population size than Finnish Spitz ( = 98 and N_eg = 49). Interestingly, the r² data show that the effective population size has contracted dramatically since the establishment of the breed, emphasizing the role of breed standards as constrains for the breeding population. Despite the small population size, Nordic Spitz still maintains SNP heterozygosity levels similar to mixed breed dogs (mean Hz = 0.409). Our study demonstrates that although pedigree analyses cannot provide estimates of the present diversity within a breed, the effective population sizes inferred from them correlate with the genotyping results. The genetic relationships of the northern Spitz breeds and the benefits of the open breed registry are discussed.     

Genetic structure of the oriental white stork (Ciconia boyciana): implications for a breeding colony in a non‐breeding area

The oriental white stork (Ciconia boyciana) is a threatened species, and their numbers are still in decline due to habitat loss and poaching. China is a breeding and main wintering area for this animal and in recent years some individuals have been found breeding in wintering areas and at some stopover sites. These new breeding colonies are an exciting sign, however, little is understood of the genetic structure of this species. Based on the analysis of a 463‐bp mitochondrial DNA (mtDNA) control region, we investigated the genetic structure and genetic diversity of 66 wild oriental white storks from a Chinese population. We analyzed the sequences of 66 storks obtained in this study and the data of 17 storks from a Japanese population. Thirty‐seven different haplotypes were detected among the 83 samples. An analysis of molecular variance showed a significant population subdivision between the two populations (F_ST= 0.316, P < 0.05). However, the phylogenetic analysis revealed that the samples from the different populations did not form separate clusters and that there were genetic exchanges between the two populations. Compared with the Japanese population, the Chinese population had a relatively higher genetic diversity with a haplotype diversity (hπ SD) of 0.953 ± 0.013 and a nucleotide diversity (π± SD) of 0.013 ± 0.007. The high haplotype diversity and low nucleotide diversity indicate that this population might be in a rapidly increasing period from a small effective population. A neighbor‐joining tree analysis indicated that genetic exchange had occurred between the newly arisen southern breeding colony and the northern breeding colony wintering in the middle and lower Yangtze River floodplain. These results have important implications for the conservation of the oriental white stork population in China.     

Distribution Et Écologie de Quelques MammifèRes de L’est du Congo

1. C. kraussi in the Swartkops river estuary in South Africa has a major breeding period in winter-spring (May-July/August) and a minor breeding period in summer (November-January).

2. A maximum of 43 per cent of ovigerous mature females was recorded. Females in the 8 and 9 mm carapace-size classes make the major contribution to the breeding effort.

3. Recruitment is very marked with 60-80 per cent of the population consisting of juveniles at times.

4. Both sexes live for about two years. Females hatching in winter-spring may breed first in summer at an age of about 16-18 months and then again in the following winter at an age of about two years. Females hatching in summer breed first in winter at an age of about 18 months and some in the following summer at an age of about two years.

5. Breeding and growth in C. kraussi is compared with that in other known callianassids, and discussed in relation to estuarine eco-systems and conservation measures.     

The population dynamics of the estuarine isopod Exosphaeroma hylocoetes (Barnard, 1940) within three temporarily open/closed southern African estuaries

The population dynamics of the estuarine isopod, Exosphaeroma hylocoetes, was investigated monthly from February 2006 to August 2007 in three temporarily open/closed Eastern Cape estuaries, the East and West Kleinemonde and Kasouga Estuaries. Mean isopod abundances and biomasses ranged between 0 and 4791 ind/m² and 0 and 9.65 mg/dwt/m² in the West Kleinemonde Estuary and between 0 and 108 ind/m² and 0 and 0.318 mg/dwt/m² in the nearby East Kleinemonde Estuary. In the Kasouga Estuary, the values ranged between 0 and 3650 ind/m² and 0 and 5.105 mg/dwt/m². Temporal changes in the abundance and biomass of E. hylocoetes within the three systems was primarily linked to mouth phase, with populations crashing when the mouth was open and to a lesser extent, seasonality. In all three estuaries maximum abundance and biomass was recorded in the middle reaches, which could be ascribed to the presence of submerged macrophytes. E. hylocoetes demonstrates strong sexual dimorphism, with males being significantly larger than females (P < 0.05). Sex ratios were skewed in favour of females in all three estuaries. Females were encountered carrying young from an overall length of 2.5 mm throughout the year     

Reducing inbreeding rates with a breeding circle: Theory and practice in Veluws Heideschaap

Breeding circles allow genetic management in closed populations without pedigrees. In a breeding circle, breeding is split over sub‐populations. Each sub‐population receives breeding males from a single sub‐population and supplies breeding males to one other sub‐population. Donor‐recipient combinations of sub‐populations remain the same over time. Here, we derive inbreeding levels both mathematically and by computer simulation and compare them to actual inbreeding rates derived from DNA information in a real sheep population. In Veluws Heideschaap, a breeding circle has been in operation for over 30 years. Mathematically, starting with inbreeding levels and kinships set to zero, inbreeding rates per generation (ΔF) initially were 0.29%–0.47% within flocks but later converged to 0.18% in all flocks. When, more realistically, inbreeding levels at the start were high and kinship between flocks low, inbreeding levels immediately dropped to the kinship levels between flocks and rates more gradually converged to 0.18%. In computer simulations with overlapping generations, inbreeding levels and rates followed the same pattern, but converged to a lower ΔF of 0.12%. ΔF was determined in the real population with a 12 K SNP chip in recent generations. ΔF in the real population was 0.29%, based on markers to 0.41% per generation based on heterozygosity levels. This is two to three times the theoretically derived values. These increased rates in the real population are probably due to selection and/or the presence of dominant rams siring a disproportionate number of offspring. When these were simulated, ΔF agreed better: 0.35% for selection, 0.38% for dominant rams and 0.67% for both together. The realized inbreeding rates are a warning that in a real population inbreeding rates in a breeding circle can be higher than theoretically expected due to selection and dominant rams. Without a breeding circle, however, inbreeding rates would have been even higher.     

甘南地区歪头菜的选择性败育及结实格局

歪头菜是甘南地区极具利用价值的饲用植物,可为家畜提供丰富的蛋白质,因此加强种子生产是歪头菜在该地区种植推广的基础。本实验着眼于歪头菜生殖过程中的选择性败育,研究了歪头菜花期不同阶段和花序不同位置果实和种子的结实格局,得出以下结果:1)2龄植株盛花期花序上结荚率最高(41.6%),5龄植株初花期花序上结荚率最高(28.8%),两者均为末花期花序上结荚率最低,且所结荚果内种子数为0。2)2龄和5龄植株均为花序中部结荚率最高,分别为43.9%和41.6%,但上、中、下部位荚果内的种子数无显著(P>0.05)差异。3)荚果内靠近柱头端和靠近小花柄端的胚珠败育的可能性更大,荚果中部(从柱头端算起第2,3,4,5位置)的胚珠形成种子时更易出现交替败育的趋势。4)每序结荚数随着每序单花数的增加呈现先增加后减少的趋势,当每序单花数为20朵时,每序结荚数达到最大8个。由上述结果推测,选择性败育引起的歪头菜果实和种子的结实分配格局可能是资源限制的原因,也可能是植物对特殊生境的一种繁殖策略,然而这一结果影响了歪头菜的实际种子产量。     

Estimation of genetic gains in populations with overlapping generations

A technique for estimating genetic improvement from an “internal genetic control” was developed for populations which fulfil the following requirements: (1) The population can be divided into distinct subpopulations (e.g. sire families or inbred lines) with several sets of offspring such as hatches or litters produced during the life‐span of each subpopulation. (2) The replacement of subpopulations or breeders in the selection programme takes place more or less continuously to provide overlapping generations. (3) The effect of ageing of the parents on progeny performance can be measured.

The genetic change in such populations independent of environmental time trends can be estimated directly from the breeding data without any need for a separate control population.

The technique was applied to a practical meat‐type poultry breeding operation to yield an estimated annual genetic improvement of 100 g body weight for each bird at 9 weeks of age.     

Genetic monitoring of ex situ African Penguin (Spheniscus demersus) populations in South Africa

The African Penguin (Spheniscus demersus) has suffered population declines and is listed in the IUCN Red List as Endangered. The species is endemic to the coast of southern Africa, and breeding colonies are distributed on the south-western coast of Africa. Currently, African Penguins are being kept in zoo and aquarium facilities throughout South Africa. In this study, molecular genetic data based on 12 microsatellite markers from 1 119 African Penguin samples from four facilities were generated in order to determine the level of genetic variation, population structure and differentiation, and effective population size to assist in the development of an effective captive management plan. Expected heterozygosity ranged from 0.57 to 0.62, and allelic richness from 4.2 to 5.1. However, based on differences between first- and second-generation captive birds, we conclude that the ex situ population is at risk of losing genetic variability in the future and management programmes should include exchange of birds between captive facilities in order to induce gene flow and increase effective population size. Adding individuals from in situ populations should also be considered in the future in cases where these birds cannot be rehabilitated. Molecular genetic analyses of wild penguin populations should be carried out for comparison, and to ascertain to what degree ‘in situ genetic diversity’ is represented among ex situ populations. With regular resampling and analyses, the extent of the effect of processes such as genetic drift on diversity in the ex situ penguin populations will become evident.     

Improving management for higher reproduction accelerates genetic improvement in closed herd of swine

The present study compared responses to selection at different conception rates and litter sizes at weaning in a simulated closed herd in a swine breeding program. The base population consisted of 10 males and 50 females, and 10 generations of selection was practiced by using individual phenotype or best linear unbiased prediction of breeding values for a trait with heritability (h²) of either 0.2 or 0.5. The probability of conception in a single mating was assumed to be 0.8, 0.9 or 1.0. Litter size at weaning was sampled randomly from a normal distribution with mean 8, 10 or 12 and variance 8.1225. Genetic response increased by approximately 6% for h² = 0.2 and approximately 5% for h² = 0.5 at generation 10 when conception rate was increased from 0.8 to 1.0. However, litter size at weaning did not affect response to selection. In conclusion, improving conception rate by environmental management increases genetic response indirectly in a breeding program of a closed swine herd.     

Early development and larval behaviour of a minnow,Barbus anoplus (Pisces: Cyprinidae)

The chubbyhead barb, Barbus anoplus, underwent a population explosion in the early phases of filling of Lake be Roux on the Orange River. This successful colonization was possibly related to the survival strategy of the young stages of this minnow. It is suggested that some of the development traits of B. anoplus enabled it to become the most widespread freshwater fish species south of the Limpopo River. The development and behaviour of embryos and larvae of B. anoplus are described and discussed with reference to their survival strategy and potential colonizing ability. Some of the protolarvae were pelagic and the relevance of this behaviour is noted.     

A New Ranavirus Isolated from Pseudacris clarkii Tadpoles in Playa Wetlands in the Southern High Plains,Texas

Abstract

Mass die-offs of amphibian populations pose a challenging problem for conservation biologists. Ranaviruses often cause systemic infections in amphibians and, in North America, are especially virulent and lethal to larvae and metamorphs. In this paper we describe a novel ranavirus isolate as well as the first recorded occurrence of ranavirus in the southern High Plains of Texas and in associated populations of the spotted chorus frog Pseudacris clarkii. The breeding sites were playas, that is, wetlands that fill via isolated thunderstorms that can occur infrequently; thus, not every playa has water or breeding amphibians annually. We did not detect ranavirus in sympatric anurans, but other reports document ranaviruses in Pseudacris spp. elsewhere. The occurrence of multiple isolates of ranavirus in a number of Pseudacris species suggests that this genus of frogs is highly susceptible to ranaviruses and may experience exceptionally high mortality rates from infection. Thus, the virus may contribute to substantial seasonal population declines and low seasonal recruitment, with negative impacts on populations of breeding adults in successive years.     

Phenotypic plasticity is maintained despite geographical isolation in an African cichlid fish,Pseudocrenilabrus multicolor

Gene flow among populations in different selective environments should favor the evolution of phenotypic plasticity over local adaptation. Plasticity in development is a common response to long‐term hypoxia in some widespread African fishes, including Pseudocrenilabrus multicolor, a cichlid that exploits both normoxic (high oxygen) rivers/lakes and hypoxic (low oxygen) swamps. Previous studies have shown that fish from normoxic and hypoxic sites differ in many traits, including gill size, brain size and body shape, and that much of this variation reflects developmental plasticity. However, these earlier studies focused on areas in Uganda where gene flow between swamp and river or lake populations is high. In this study we tested the hypothesis that P. multicolor from a relatively isolated lake population (Lake Saka, Uganda) exhibit low levels of plasticity in traits related to oxygen uptake. Multiple broods of P. multicolor from Lake Saka were reared under low and high dissolved oxygen, and traits related to gill size, brain mass and body shape were quantified. Surprisingly, both gill size and brain mass showed high levels of developmental plasticity. We suggest that high levels of plasticity, particularly in the gill size of P. multicolor, reflects low costs of maintaining the plastic response, even in relatively isolated populations.     

Determinations of the reproductive output of populations of a thalassinid prawn Upogebia africana (Ortmann) in the Swartkops estuary

Populations of large and ‘stunted’ (adult carapace lengths = 17,0–24,0 and 12,0–19,0 mm respectively) Upogebia africana were regularly and quantitatively sampled in the Swartkops estuary. At the site with ‘stunted’ prawns a well-defined spring (July to October) and summer (December to March) breeding cycle was recorded. The ‘stunted’ female prawns produced two broods of eggs per annum and the brood size ranged from about 305 to 2282 eggs depending on the size of the female. At the site with large prawns the spring and summer breeding cycles tended to merge, forming a longer breeding season, with the adult females apparently producing three broods of eggs per annum. The brood size of these females ranged from about 1304 to 4819 eggs. The calculated reproductive output (Pr) and reproductive biomass ratio (Pr/B) of the latter population were much greater than those of the ‘stunted’ prawns (1331 kJ m^?2 y^? and 0,53 v. 332 kJ m^?2 y^?1 and 0,26).     

Preliminary estimates of population size and capture rates of mature Acanthopagrus berda in the Kosi lakes system,South Africa,using mark-recapture methods

Population size estimates and capture rates by various fishing techniques of mature estuarine bream, Acanthopagrus berda, were determined in the Kosi lakes system using mark-recapture methods. The total population size of mature A. berda was estimated to be 45 257 (95% confidence interval: 31 589-74 429) based on fish recaptured in fish traps and 56 112 (95% confidence interval: 25 505-374 080) using recaptures from recreational anglers. Fish traps were estimated to catch about 5% of the mature population of A. berda annually, while recreational rod and line angling and traditional spearfishing accounted for about 1% and 0.2% of the mature population respectively. Limited mark-recapture data for other species of fishes in the lakes yielded annual capture rates by fish traps ranging from 2.4% to 5.8%. These levels of fishing appear low enough to be sustainable, but evidence from a long-term monitoring programme indicates an increase in overall fishing effort in the Kosi lakes between 1984 and 1996 and a three-fold increase in the proportion of the A, berda population caught annually. However, there is no evidence from available catch per unit effort (CPUE) data that current levels of harvesting of A. berda are unsustainable. This needs to be confirmed through modelling of the A. berda stocks and continued monitoring of CPUE in all components of the Kosi lakes fishery. In the meantime, an increase in fishing effort directed at this species is not recommended.     

Effects of levonorgestrel‐quinestrol (EP‐1) treatment on Mongolian gerbil wild populations: a case study

Rodent pest population outbreaks occur frequently in grassland ecosystems in northern China. The Mongolian gerbil (Meriones unguiculatus) is a dominant pest rodent which is distributed across the semi‐desert grasslands of Inner Mongolia, China. In 2009, we studied the contraceptive effect of levonorgestrel‐quinestrol (EP‐1), concentration 50 ppm, on a wild Mongolian gerbil population. The one‐off contraceptive treatment was compared with a control group using a semi‐monthly live trapping method in the Ordos Semi‐desert Grassland Region of Inner Mongolia. The results show that juveniles were not recruited in spring in the treatment group. Ratios of juveniles in the control and treatment groups showed significant semi‐monthly differences from spring to summer (one‐way ANOVA, F_{2, 14}= 7.53, P < 0.05). Between both groups, annual fluctuations of juvenile and total population densities were significantly different respectively (F_{2, 14}= 4.64, P < 0.05; F_{2, 18}= 7.72, P < 0.05). The contraceptive EP‐1 delayed the normal reproductive pattern of Mongolian gerbil populations. This suppressed birth rates of gerbil populations, reduced their densities, and changed their age structures. The period of EP‐1 baiting should be extended but it could be an ideal method for controlling Mongolian gerbil populations during each breeding season.