花鲈不同养殖群体的遗传结构分析

采集我国花鲈(Lateolabrax maculatus)主要养殖地区山东(青岛市和东营市)、浙江(宁波市)、福建(福鼎市、漳州市梅岭镇、漳州市桥东镇和漳州市东山县)、广东(珠海市斗门区)的86尾个体作为实验对象,结合已报道的花鲈野生群体的遗传研究背景,通过ddRAD简化基因组测序对以上花鲈养殖群体进行遗传结构分析。主成分分析(PCA)与遗传组分分析结果(最佳聚类K值为2)均显示,8个花鲈养殖群体与天津、烟台和文登的野生群体间遗传差异较小,表明我国花鲈养殖群体主要为黄、渤海种质来源。8个养殖群体间遗传分化分析结果显示,福建漳州梅岭镇和桥东镇的2个养殖群体与其他养殖群体间出现显著的遗传差异,表明所检测的养殖群体内部也出现了一定程度的分化。本研究结果可为我国从山东到广东(从北到南)的花鲈养殖群体遗传结构分析提供参考,为后续花鲈种质资源的保护、育种工作提供依据。     

中国沿海6个花鲈群体的形态差异分析

通过聚类分析、主成分分析和判别分析等多元分析方法,对东港、绥中、秦皇岛、青岛、舟山以及珠海等6个花鲈(Lateolabrax maculatus)地理群体的8个形态比例性状进行了研究。聚类分析和主成分分析表明,6个花鲈群体可被分为两支:来自黄海、渤海海域的东港、秦皇岛、绥中和青岛群体为一支(北方群体);东海海域的舟山群体和南海海域的珠海群体为另一支(南方群体)。南北群体间有一定程度的形态分化,和舟山群体相比,珠海群体和北方群体的亲缘关系更近。主成分分析获得的3个主成分方差贡献率分别为31.726%、27.744%和14.075%,累计贡献率为73.545%。利用8个变量构建的6个地理种群的判别公式,判别准确率在63.6%~84.4%之间,综合判别准确率72.7%。本研究结果为花鲈地理种群判别、种质资源评价以及良种选育等提供了基础资料。     

Using trace elements in otoliths to discriminate between wild and farmed European sea bass (<Emphasis Type="Italic">Dicentrarchus labrax</Emphasis> L.) and Gilthead sea bream (<Emphasis Type="Italic">Sparus aurata</Emphasis> L.)

Trace elements in otoliths of sea bass (Dicentrarchus labrax L.) and sea bream (Sparus aurata L.) from fish farms and coastal wild populations in the western Mediterranean Sea were analysed by inductively coupled plasma-mass spectrometry. Results showed that concentrations of Mg, K, and Mn differed significantly between wild and farmed sea bass, while concentrations of Mg, K, Mn, Fe, Zn, Sr, and Ba varied significantly between wild and farmed sea bream. Discriminate analysis and cross-validation classification showed that the trace element profile in otoliths can be used to separate farmed fish from wild stocks with high accuracy on both sea bass (individuals correctly classified: 90.7 %) and sea bream (individuals correctly classified: 96.6 %). Moreover, trace elements in otoliths resulted to be useful to discriminate among wild fish stocks within each species.     

Mangrove horseshoe crab (Carcinoscorpius rotundicauda Latreille, 1802) populations reveal genetic break in Strait of Malacca,with connectivity along southern coasts of Peninsular Malaysia

1. The mangrove horseshoe crab, Carcinoscorpius rotundicauda, has divergent populations between the east and west coasts of Peninsular Malaysia, with the southern coast acting as a land barrier. The actual position of such a genetic break along Peninsular Malaysia as well as the connectivity status of the southernmost C. rotundicauda populations with east and west coast populations remain unexplored, however.
2. The aim was to investigate the genetic diversity and structure of C. rotundicauda populations from the west (Kuala Sepetang in State Perak), east (Balok in State Pahang), and southern (Pendas in State Johor) coasts of Peninsular Malaysia. Haemolymph samples from adult C. rotundicauda specimens (n = 152) and eggs from their freshly deposited nests (n = 190) were collected monthly (from January 2016 to January 2017) for the sequencing of mitochondrial cytochrome c oxidase subunit I (COI).
3. Gene isolates of C. rotundicauda from the present study were compared with National Center for Biotechnology Information (NCBI) GenBank sequences to cover most of the range of the species in Asia. A neighbour-joining tree strongly supported two clades, separating the west-coast populations from the south- and east-coast populations, with further substructure patterns.
4. Both haplotype network and barrier analyses revealed a genetic break within the Strait of Malacca instead of the southern tip of Peninsular Malaysia. The southernmost samples from the Strait of Johor formed a haplotypic diverse gene pool that appeared only as a subclade of the eastern populations. In a detailed haplotype network of 347 individuals, individuals with similar COI sequences indicate connectivity between C. rotundicauda on the east and C. rotundicauda on south and south west of Peninsular Malaysia.
5. Overall, the genetic break between C. rotundicauda populations is better explained by the convergent ocean currents and available mangrove habitats on the west coast (i.e. Strait of Malacca), rather than the point of the Malay Peninsula acting as a land barrier alone.

     

Will philopatry in sea bass, Dicentrarchus labrax, facilitate the use of catch-restricted areas for management of recreational fisheries?

Many adult sea bass (>40 cm total length) tagged between May and October around the coasts of England and Wales have been recaptured close to their respective tagging locations in successive years. Analysis of mark and recapture data sets, for the late 1970s and early 1980s and in 2000–2006, show that some 55% of all recaptures were within 16 km of their original release position. This suggests that mortality rates of adult bass in local populations could be reduced by around 50% if a number of carefully selected areas were designated as catch and release only for bass, thus providing a management option with which more and bigger sea bass will be available to recreational sea anglers.     

基于线粒体D-loop区探讨我国养殖大口黑鲈的分类地位和遗传变异

对大口黑鲈国内养殖种群(G)和北方亚种(N)、佛罗里达亚种(F)两个野生种群共23个个体的线粒体DNA D-loop区序列进行分析,探讨国内养殖大口黑鲈(Micropterus salmoides)的分类地位和遗传变异。D-loop区序列分析结果表明,共检测到73个变异位点,总变异率为9.0%。三群体间没有共享单倍型,群体G的5个个体含2种单倍型,群体N的11个个体含9种单倍型,群体F中每个个体均为一种单倍型。对三个群体间的遗传距离分析表明,养殖群体与北方亚种野生群体的遗传距离为0.009,与佛罗里达亚种野生群体的遗传距离为0.053,表明国内养殖的大口黑鲈在分类上属于北方亚种,分子系统进化树的进一步分析结果与其一致。群体N、F和G的核苷酸多样性指数(π)依次为0.008 2,0.013和0.000 5,单倍型多样性指数(h)分别为0.946,1.000和0.400,显示出养殖大口黑鲈群体的遗传多样性相比国外野生群体有明显下降,有必要开展大口黑鲈的遗传改良研究,提高其种质质量。     

花鲈冷冻精液受精鱼苗与鲜精受精鱼苗的同工酶比较分析

采用水平凝胶电泳技术对花鲈(Lateolabrax maculatus)冷冻精液受精鱼苗与鲜精受精鱼苗进行了同工酶分析。本实验选取肌肉和肝脏两种组织,检测了IDHP、PGM、LDH、GPI、MDH、G3PDH、ME、HK、SOD、G6PD和SDH等11种酶,得到13个位点:IDHP*、PGM-1*、PGM-2*、LDH*、GPI-1*、GPI-2*、MDH*、G3PDH*、ME*、HK*、SOD*、G6PD*和SDH*。结果显示在0.99水平,SDH*和PGM-2*位点在两种受精鱼苗中均表现为多态,多态位点比例均为0.1538;平均预期杂合度分别为0.0460和0.0407,但未观测到杂合子,观测杂合度均为0,遗传偏离指数均为-1;有效等位基因数分别为1.0720和1.0850,花鲈冷冻精液受精鱼苗与鲜精受精鱼苗的遗传相似度为0.9991,遗传距离为0.0010。由此可见,花鲈的冷冻精液受精鱼苗和鲜精受精鱼苗间未出现同工酶水平上的遗传差异,冷冻保存精液完全适用于花鲈育苗生产。     

Population genetic structure and gene flow in the Japanese sea cucumber Apostichopus japonicus across Toyama Bay, Japan

The Japanese sea cucumber Apostichopus japonicus has a pelagic-lecithotrophic larva. Here, we clarify larval dispersal among Japanese sea cucumber populations by describing the levels of distinctiveness and gene flow among red and green variant populations of A. japonicus across Toyama Bay using 11 polymorphic microsatellite markers. Samples of Japanese sea cucumber populations were collected from three localities (Noto, Shinminato, and Uozu) around Toyama Bay. Geographically separated populations of red and green variants were determined to be genetically distinct, supported by phylogenetic analysis and the distinctiveness range values of pairwise multilocus estimates of F _ST. Contemporary migration analyses indicated that the majority of estimated migration events occurred within A. japonicus populations comprised of only either red or green variants. In a historical gene flow analysis, two best-fit models (n-island and stepping stone models) showed circulation for the gene migration in Toyama Bay among red variant populations. Our results provide useful information on the genetic structure of Japanese sea cucumber populations and will be helpful for genetic conservation and fisheries management of sea cucumber populations in Toyama Bay.     

Competition between farmed and wild fish: The French sea bass and sea bream markets

ABSTRACT

Aquaculture is contributing at an increasing rate to the world seafood supply. The interaction between fisheries and aquaculture is especially important for the seafood market where supply of wild and farmed fish can affect price dynamics. We examine market interactions in the French fresh sea bass and sea bream markets. We test for long-term price parity between farmed and wild products for these two species, applying a bivariate cointegration approach to market delineation. We also conduct the Law of One Price (LOP) test between price series. Our data base consists of monthly domestic price series for fish purchased by French households from 2007 to 2012. Our empirical results show that the fresh fish markets for whole wild and farmed sea bream are partially integrated, yet those for whole wild and farmed sea bass are not integrated. The substantially higher price for wild sea bass relative to farmed sea bass suggests that consumers may be more sensitive to seafood production processes when it comes to higher-value species.     

Cloning of a gonadal follicle stimulating hormone receptor cDNA from the European sea bass, Dicentrarchus labrax

The molecular cloning of the sea bass FSH receptor gene is reported. Expression analysis revealed that this gene is exclusively expressed in gonadal tissues.     

基于线粒体控制区序列的三疣梭子蟹增殖放流亲蟹遗传多样性研究

为研究山东沿海三疣梭子蟹增殖放流亲蟹群体的遗传多样性状况,实验采用536 bp的线粒体DNA控制区片段作为分子标记,对4个亲蟹群体的遗传多样性和遗传结构进行了分析。结果显示,301个三疣梭子蟹个体共检测到155个单倍型,4个群体的单倍型多样度为0.972 3~0.993 0,核苷酸多样度为0.021 2~0.023 6,表现出丰富的遗传多样性。AMOVA分析和Fst分析结果均显示,4个三疣梭子蟹亲蟹群体间遗传分化微弱,未形成明显的遗传结构,NJ系统树中未出现与各群体相对应的的谱系分支。研究表明,4个增殖放流亲蟹群体的遗传多样性丰富,且其遗传结构与放流海域的野生群体间没有明显分化,种质资源质量较好。此外,群体历史动态分析显示,渤海南部和黄海北部的三疣梭子蟹历史上曾经历过群体扩张事件。     

Influence of rearing temperature at two periods during early life on growth and sex differentiation of two strains of European sea bass

The effect of water temperature on sex differentiation was examined in European sea bass (Dicentrarchus labrax) of two strains from the Northwestern and Southeastern Mediterranean Sea, during larval or nursery rearing. Temperatures <17 °C enhanced feminization, while 21 °C during larval rearing induced higher male% compared to the nursery stage, and the overall male% was significantly different among strains (P?<?0.05). The study shows that management of larval rearing temperature can prevent the high male% observed in cultured populations.     

Price and production trends in the marine fish aquaculture in Spain

The Spanish aquaculture sector has undergone a rapid and continuous growth becoming one of the biggest European producers. A wide range of species are farmed and, among them, the sea bass, sea bream and turbot make a significant contribution to the total of the Spanish fish farming output. In this paper, we analyse and predict the medium-term trend of the production and price level for the three leading species previously mentioned. The results obtained show a significant increase in the production of sea bream, sea bass and turbot. The results show also a slight decrease in the sea bream average price, a stable trends for the sea bass and increasing prices for the turbot.     

大口黑鲈肌肉营养成分分析及营养评价

对三种不同来源(人工配合饲料饲养、冰鲜下杂鱼饲养和野生捕捞)的大口黑鲈成鱼的含肉率、肌肉中的水分、蛋白质、脂肪、灰分含量和氨基酸组成进行了分析,对其营养价值进行了综合评价,并与完全摄食人工配合饲料的中国花鲈进行了比较。结果表明:三种来源的大口黑鲈蛋白质含量在17.97%~20.15%,脂肪含量在0.81%~6.41%,灰分含量1.24%~1.41%,水分含量72.12%~79.98%,肌肉中17种氨基酸总量为14.19%~16.47%,其中必需氨基酸占氨基酸总量的44%以上,表明大口黑鲈肌肉蛋白是一种优质蛋白源。使用人工配合饲料饲养的大口黑鲈与使用冰鲜下杂鱼饲料饲养的大口黑鲈其肌肉营养成分以及氨基酸组成相差不大,但含肉率存在很大差异,人工配合饲料饲养、冰鲜下杂鱼饲养和野生捕捞的大口黑鲈含肉率分别为74.27%、64.86%和62.71%。而全部摄食人工配合饲料的中国花鲈含肉率为72.53%,氨基酸总量和必需氨基酸含量都高于三种来源的大口黑鲈。     

Application of systematic adaptive cluster sampling for the assessment of black sea bass <Emphasis Type="Italic">Centropristis striata</Emphasis> abundance

In this study, we applied systematic adaptive cluster sampling (SACS) to assess the abundance of black sea bass Centropristis striata on hard bottom habitats in the Mid-Atlantic Bight (MBA; USA). We used a remote underwater video system to obtain video recordings of black sea bass from 25 June to 6 August 2013 within a 25-square nautical mile (nmi²) sampling region. Data in the form of fish counts were collected from video recordings and used to estimate parameters including sample means and population totals of black sea bass for two adaptive cluster sampling estimators and a single systematic sampling estimator. The precision and relative efficiencies of the parameter estimates were also calculated and compared. In total, two adaptive cluster samples were encountered within the sampling region. Sample means and population totals were largest for the systematic sampling (SS) estimator while the adaptive sampling estimators produced parameter estimates with the lowest variances and highest precision. Our results indicated that SACS was more efficient and advantageous with respect to sampling costs [i.e., sampling time (hours) and travel distance (kilometers)] than SS alone for assessing the abundance of clustered populations of C. striata on hard bottom habitats in the MBA.     

Comparative effectiveness of 2-phenoxyethanol and Propiscin as anesthetics for juvenile sea bass <Emphasis Type="Italic">Dicentrarchus labrax</Emphasis> L.

The comparative effectiveness of 2-phenoxyethanol and Propiscin as anesthetics were studied on juvenile sea bass. Both anesthetics showed low toxicity and good hypnotic characteristics, however median survival times at the same concentration of both anesthetics differed. Propiscin showed much lower LT₅₀ than 2-phenoxyethanol, pointing towards its elevated toxicity in juvenile sea bass, even the same concentrations of Propiscin induced slower anesthesia than 2-phenoxyethanol. The most suitable Propiscin concentration for anesthesia was 0.56 ml/l, while the most suitable concentration of 2-phenoxyethanol was 0.32 ml/l for juvenile sea bass. Mortalities after 96 h were induced with Propiscin at lower concentrations then of 2-phenoxyethanol, resulting in the conclusion that the 2-phenoxyethanol is a safer anesthetic for use with juvenile sea bass (Dicentrarchus labrax L.).     

海鲈游泳续航时间和运动代谢规律研究

为研究海鲈(Lateolabrax japonicus)的游泳续航能力和游泳过程中的物质代谢规律,以深水网箱养殖的3月龄海鲈为研究对象,采用游泳续航时间和生化指标作为评测海鲈游泳能力和代谢规律的方法进行了试验。结果显示,海鲈的游泳续航时长为200 min,其续航能力强于大黄鱼而弱于美国红鱼。在游泳过程中,海鲈血糖浓度升高,但差异性不显著(P>0.05),肌糖原随着时间的增加显著减少(P<0.05),且肌糖原浓度在海鲈疲劳时接近于0。当鱼接近100%疲劳时,其肝糖原浓度也接近于0;当海鲈以不同疲劳程度游泳时,其肌肉乳酸脱氢酶浓度会显著升高(P<0.05)。表明海鲈的续航游泳过程伴随着无氧呼吸和有氧呼吸。     

Price interactions between wild and farmed products: Turkish sea bass and sea bream markets

We investigate empirically market interactions in the Turkish wild and farmed sea bass and sea bream markets. For gilthead sea bream and European sea bass, we conduct a Granger causality test between the prices of the wild and farmed products, based on the estimation of a vector autoregressive model. Our data set consists of annual fish prices from 1996 to 2016. Our empirical results show that the wild and farmed sea bass are neither substitutes nor complements: the markets for each product are independent. However, in the case of sea bream, the price variations for farmed sea bream have a causal impact on the price of wild sea bream. Moreover, the price of wild sea bream Granger-causes the price variation of farmed sea bream. Thus, the wild and farmed sea bream markets are integrated.     

Analysis of immune-relevant genes expressed in red sea bream (Chrysophrys major) spleen

Expressed sequence tag (EST) analysis is an efficient tool for gene discovery and for profiling gene expression. In order to isolate functional genes involved in immunity in fish, a cDNA library was constructed from red sea bream (Chrysophrys major) spleen by unidirectional cloning. A total of 2010 ESTs from the library was sequenced and compared with sequences in the GenBank database. Of the 2010 ESTs, 320 ESTs (15.9%) were identified as orthologs of known gene from other organisms by BLAST searches, whereas 1690 ESTs (84.1%) appeared to be unknown and are likely to represent newly described genes. These identified clones were derived from at least 81 genes, which were categorized into eight categories: 9 in cell structure/motility (11.1%), 14 in metabolism (17.3%), 8 in cell defense/immunity (10%), 5 in cell division (6.2%), 7 in cell signal transduction/communication (8.6%), 30 in gene/protein expression (37%), 5 hemoglobin (6.2%) and 3 genes lacking enough information to be classified (3.7%). Several important cDNAs involved in immune functions, such as immunoglobulin light chain (IgL), MHC class II, MHC class IIβ and RAP2c, were identified in red sea bream and compared for their structure with those from other organisms. Alignment showed that the red sea bream IgL precursor was closer to that of spotted wolfish than to that of yellowtail, Europe sea bass, orange spotted grouper, Atlantic salmon, channel catfish, fugu and sterlet. Phylogenetic analysis indicated that the red sea bream MHC II and MHC IIβ were more related to those from striped sea bass than to those from cichlid, flounder, salmonids, zebrafish and carp. High identity (over 92%) in deduced amino acid sequence of RAP2c between red sea bream and mammals implied that RAP2c gene was highly conserved during evolution.     

Proteomic profiling of sea bass muscle by two-dimensional gel electrophoresis and tandem mass spectrometry

In this study, the proteome profile of European sea bass (Dicentrarchus labrax) muscle was analyzed using two-dimensional electrophoresis (2-DE) and tandem mass spectrometry with the aim of providing a more detailed characterization of its specific protein expression profile. A highly populated and well-resolved 2-DE map of the sea bass muscle tissue was generated, and the corresponding protein identity was provided for a total of 49 abundant protein spots. Upon Ingenuity Pathway Analysis, the proteins mapped in the sea bass muscle profile were mostly related to glycolysis and to the muscle myofibril structure, together with other biological activities crucial to fish muscle metabolism and contraction, and therefore to fish locomotor performance. The data presented in this work provide important and novel information on the sea bass muscle tissue-specific protein expression, which can be useful for future studies aimed to improve seafood traceability, food safety/risk management and authentication analysis. This work is also important for understanding the proteome map of the sea bass toward establishing the animal as a potential model for muscular studies.