Soil microorganisms antagonistic towards Rhizobium japonicum

Success in introducing Rhizobium japonicum strains into soil is related to their interaction with native microorganisms including some that are antagonistic. Actinomycetes, bacteria, fungi and rhizobiophages antagonistic towards strains of R. japonicum were counted directly using soil samples from field plots under different crop and soil management systems. The antagonistic actinomycete population varied from 1.3 × 10³ to 4.5 × 10⁵ g^?1 dry soil and ranged up to 90% of total actinomycetes. Soybean rhizosphere soil samples included antagonistic actinomycetes ranging up to 70% of total actinomycetes. The antagonistic bacterial population was less than 10% of total bacteria and the proportion did not vary significantly with crop or soil management practices. Antagonistic fungi were observed for many of the soils examined but they could not be counted. There were few rhizobiophages and they were found most frequently in soybean rhizospheres. Occasional bacterial and actinomycete colonies that stimulated growth of R. japonicum were randomly observed among the soil samples tested.     

Growth of Gaeumannomyces graminis var. tritici in soil: Effects of temperature and water potential

The effects of temperature and water on the growth of the take-all fungus, Gaeumannomyces graminis var. tritici (Ggt), were examined in two factorial experiments. The first examined the effects of temperature and water potential on the growth of two isolates of Ggt on agar media, using osmotically-adjusted water potentials. The second experiment was concerned with the growth of the Ggt isolates in one sterile and two natural soils at two water regimes in the absence of a living host. Three temperatures (10, 18 and 26°C) were used in these experiments. A third experiment determined growth through soil.Growth was greatest at high temperatures and low water potential in axenic culture, but in unsterile soil growth at different temperatures and water potentials was strongly influenced by competition from the soil biota. The best temperature for growth in unsterile soil was 18°C. Growth at 26°C in unsterile soil was greatly reduced, this being attributed to more intense microbial competition. In sterile soil Ggt grew equally well at 18 and 26°C. At 10°C, both isolates of Ggt grew better in unsterile soil than in sterile soil.Under suitable conditions Ggt grew out readily from infected straw into unsterile soil (up to 5 cm in 10 days) in the absence of a host plant, forming melanized, hyaline and branched hyphae. These hyphae were infectious after dry storage for 5 months in the laboratory. Ggt thus appears to be a more successful soil inhabitant than is widely believed. Our experiments could explain many of the host-based concepts related to field expression of disease.The technique presented here could be of value for testing the suppressiveness or conduciveness of soils by measuring fungal growth in soil.     

The response of cylindrocladium conidia to soil fungistasis

Direct observation of washed conidia of Cylindrocladium scoparium on non-sterile soils, air dried and rewetted immediately before deposition of conidia, indicated that peak germination (33–58%) occurred after 24 h incubation at 26°C. Peak germination on continually moist soils was lower (18–26%) than on rewetted soils. Lysis of germ tubes and germinating conidia on continually moist soils at 26°C was evident with 48 h. Conidia did not germinate on continually moist soils at 6°C and lysis did not become apparent until 168 h. Conidia germinated at a high level (93–99%) in axenic culture in the absence of exogenous C and N sources. The inhibition of conidial germination on soils may be attributed, in part, to the presence of soil volatiles. Germination of conidia placed on washed agar disks and exposed to volatiles from four soils ranged from 51 to 86% of the no-soil controls. Addition of carbon (13 ng C per conidium as glucose) and nitrogen (65 pg N ng^?1 C as NH₄C1) nullified the inhibitory effect of the soil volatiles. Germinability assayed on a selective medium at 26°C of conidia in artificially infested soils (approximately 10⁴ conidia g^?1 soil) decreased progressively during incubation at 26°C from 1 week to 4 months. No germinable conidia were recovered from artificially infested soils after 2 months incubation at 6°C. Conidia of C. floridanum and C. crotalariae responded similarly to C. scoparium in many assays.     

Hyphal density as a measure of suppression of Gaeumannomyces graminis var. tritici on wheat roots

Runner hyphae of Gaeumannomyces graminis (Sacc.) Arx & Olivier var. tritici Walker on seminal roots of wheat seedlings were photographed and their length measured. As well, their length was estimated using the line-intercept method. The correlation of 0.904 between measured and estimated lengths of hyphae was highly significant. This line intercept method was used to estimate the density (length/unit area) of hyphae on roots of plants growing in the presence and absence of a soil suppressive to G. graminis var. tritici. Estimations were made eight times during 28 days growth at 15°C. In fumigated soil (non-suppressive) inoculated with 0.1% ground oat grain infested with G. graminis var. tritici, the density of hyphae on roots started to increase at five days compared with 15 days when soil there was a 10.8% cover of the root surface after 15 days when the hyphae had reached maximum density. Suppression to G. graminis var. tritici is normally detected by a difference in disease rating of roots at 28 days but this study has shown that suppression can be demonstrated by the difference in the density of hyphae if roots are examined between seven and 19 days.     

Soils suppressive to Gaeumannomyces graminis var. tritici: Induction by other fungi

Rhizosphere soils were obtained from wheat plants growing in fumigated soil inoculated with one of the pathogens, Rhizoctonia solani, Gibberella zeae, Fusarium culmorum, Cochliobolus sativus and Pythium irregulare or one of the non-pathogenic fungi, Gaeumannomyces graminis var. graminis (Ggg) or a Phialophora-like fungus (Plf). Using a pot bioassay, these soils were tested for suppression of Gaeumanomyces graminis var. tritici (Ggt) and the fungus involved in the initial induction. G. zeae was the only fungus that induced suppression to Ggt and to itself. Ggg but not Plf induced suppression to Ggt although both fungi induced suppression to themselves.Fungi capable of inducing suppression of take-all have two characteristics in common, they induce suppression of themselves and their saprophytic survival is restricted to organic matter.     

Soil temperature,mycorrhizal infection and nodulation of Medicago truncatula and Trifolium subterraneum

Establishment of vesicular-arbuscular mycorrhizal fungi in plant roots involves a pre-infection phase of propagule germination, hyphal growth and appressorium formation, followed by growth of the fungus within the root. The effect of soil temperature on the pre-infection stage was examined by counting the numbers of fungal “entry-points” on the main roots of Medicago truncatula and Trifolium subterraneum, grown at soil temperatures of 12°, 16°, 20° and 25°C for periods up to 12 days. Increased root temperature was positively associated with increased numbers of “entry-points”. This effect was more marked between 12° and 16°C than at higher temperatures, as shown by comparing plants at the same stage of development (emergence of spade leaf) and by calculating the results as entry points per cm root.The first root nodules appeared sooner at higher temperatures (20° and 25°), but subsequent development of nodules (measured as nodule number and aggregate volume of nodules per plant, up to 21 days) was best at 16°C for both host Rhizobium combinations in non-sterile and autoclaved soil. There was no evidence that competition between mycorrhizal fungi and Rhizobium for infection sites occurred.A method of obtaining numbers of infective propagules of vesicular-arbuscular mycorrhizal fungi in soil is described.     

Rhodanese activity of flooded and nonflooded soils

Rhodanese activity (RA) was studied in 4 soils, incubated under flooded and nonflooded (60% water-holding capacity) conditions. RA in 3 soils including an acid sulphate soil pokkali increased 2.5–6.0-fold (over respective nonflooded soils), while activity of the enzyme decreased markedly in flooded alluvial soil. Similarly, anaerobic incubation of nonflooded soils under N₂ decreased RA in an alluvial soil, but increased it in pokkali soil. RA was negligible in soils, that had been reduced by flooding for 30 days and then sterilized by autoclaving. Rice rhizosphere soil exhibited significantly higher RA than the nonrhizosphere soil samples under flooded or nonflooded conditions. RA in aerobic soils was related to the microbial oxidation of S° to SO^2?₄. But, no relationship could be established between RA and S-oxidation in flooded soils and in rhizosphere soil suspensions of flooded rice plants.     

Soils suppressive to Gaeumannomyces graminis var. tritici: Effects on other fungi

The effect of soils suppressive to Gaumannomyces graminis var. tritici (Ggt) on the severity of root and crown rots caused by Rhizoctonia solani, Gibberella zeae, Pythium irregulare, Cochliobolus sativus and Fusarium culmorum was tested in pot bioassays. An induced suppressive soil was obtained from the rhizosphere of wheat plants grown at 15°C for 28 days in fumigated soil inoculated with live inoculum (colonized oat grain) of Ggt.Root rot caused by R. solani was significantly less in soil amended with either induced or naturally suppressive soil. Disease caused by the other pathogens was also reduced by the induced suppressive soil, with the least reduction occurring with F. culmorum.Colonization of the surfaces of seminal roots of wheat plants by Gaeumannomyces graminis var. graminis (Ggg) and a Phialophora-like fungus (Plf 119) was also studied using the line-intercept method. In non-suppressive soil the maximum area of the primary seminal root colonized by Ggg was 7.4 per cent and by Plf 119 was 3.3 per cent. Colonization of roots by Ggg and Plf 119 was reduced substantially by the addition of induced suppressive soil.     

Colonization of wheat roots by Gaeumannomyces graminis inhibited by specific soils,microorganisms and ammonium-nitrogen

Lineal extension of Gaeumannomyces graminis var. tritici hyphae along roots of intact wheat plants growing in soils was measured. Hyphal growth rates were lower in soils treated with NH₄⁺-N than with NO₃^?-N. In a soil that is suppressive to the take-all disease, the controlling influence of NH₄⁺-N was eliminated by soil fumigation (methyl bromide), and reintroduced to fumigated soil by additions of 1% nonsterile soil. Effects of fumigation on hyphal growth were absent in a nonsuppressive soil, and in NO₃^?-treatments of the suppressive soil. When inocula of selected groups of wheat rhizoplane microflora were reintroduced into a fumigated or a soil-reinoculated soil via a root-food base, the Pseudomonas spp. consistently appeared more suppressive in NH₄⁺-N treatments than the general bacterial flora, Bacillus spp. spores, streptomycetes, and fungi.     

The role of bacteria in the biological control of Gaeumannomyces graminis by suppressive soils

The suppression of Gaeumannomyces graminis var. tritici by certain soils or following certain soil treatments is considered to be an expression of either specific or general antagonism sensu Gerlagh (1968). Specific antagonism is effective in dilutions as high as 1 in 1,000, can be transferred from soil to soil, operates near or on wheat roots, is destroyed by 60°C moist heat for 30 min. or desiccation, is fostered by wheat monoculture but may be lost from a soil by fallow or rotation with certain crops, especially legume hay or pasture crops. Strains of Pseudomonas fluorescens may be involved. General antagonism is a soil property which cannot be transferred and is resistant to 80°C moist heat for 30 min, to methyl bromide and chloropicrin, but not to autoclaving. Take-all control by organic amendments, minimum tillage, or a soil temperature of 28°C may be expressions of increased general antagonism.In much of the southern Australian wheat belt, where take-all can cause heavy crop losses, some general but rarely specific antagonism is apparently operative. Both types of antagonism are probably operative in long-term wheat growing areas of the Pacific Northwest U.S.A. where take-all is virtually nonexistent.     

Behaviour of Phytophthora cinnamomi rands in different soils and water regimes

The effect of different soils, nutrient states and water regimes on the growth, sporulation and lysis of mycelial inocula of Phytophthora cinnamomi has been examined. It has been observed that the requirements for chlamydospore and sporangium production in soils are relatively non-specific with respect to soil type, pH, percentage organic matter and the presence or absence of an additional food source. In contrast to chlamydospore production, however, production of sporangia in soil depends on a sufficiently low water suction pressure. In some soils a low percentage water content or a water content well below field capacity did not necessarily inhibit sporangium production. The pathogen was a good competitor for pieces of both fresh and rotting Castanea sativa radicles. Trichoderma viride appeared to play a significant role in soil by lysing hyphae of P. cinnamomi and inducing it to produce oospores.     

Infection of wheat seminal roots by varieties of Phialophora radicicola and Gaeumannomyces graminis

The growth of isolates of Phialophora radicicola var. radicicola, P. radicicola var. graminicola, Gaeumannomyces graminis var. graminis, G. graminis var. tritici and Leptosphaeria narmari was compared on the coleoptiles and roots of wheat seedlings. Fungal growth was measured as the extent and density of dark runner hyphae. All except P. radicicola var. graminicola grew on coleoptiles and all grew on roots although only G. graminis var. tritici extensively colonized the root stele. Growth rate on roots was positively correlated with that on agar, P. radicicola var. graminicola and L. narmari growing at about half the rate of the other fungi; hyphal density was high for P. radicicola var. graminicola but relatively low for the other fungi. For P. radicicola var. radicicola, P. radicicola var. graminicola and G. graminis var. tritici growing from buried inocula, the extent and density of hyphae up roots towards the seed was similar to that down, but G. graminis var. tritici caused chocolate-brown stelar discoloration up roots only.Root invasion by P. radicicola var. radicicola, P. radicicola var. graminicola and G. graminis var. tritici was described from sections. Each gave a different pattern of hyphae and host response within an inoculum layer, and progressive changes occurred away from the inoculum. Studies of the rate of penetration by each fungus and the rate and pattern of death of cortical cells explained the differences between fungi. G. graminis var. tritici penetrated living cells in advance of other soil micro-organisms, and hence by hyaline hyphae inducing much lignituber formation as a host resistance reaction. P. radicicola var. graminicola penetrated only senescent or dead cells in association with other soil microorganisms, and hence by dark hyphae, inducing little lignituber formation. P. radicicola var. radicicola was intermediate in all these respects. The high hyphal density of P. radicicola var. graminicola was due to the colonization of cortical cells and spaces by dark, clearly visible, rather than hyaline hyphae, which are invisible in unstained roots. Cell death in the outer cortex explained the observed progressive restriction of growth by all fungi to the inner cortex with increasing distance from the inoculum. Spread by G. graminis var. tritici up roots was ectotrophic relative to the stele but down roots hyphae spread rapidly within the stele. Stelar reactions suggested as resistance mechanisms occurred up roots only. Their absence down roots is attributed to infection disrupting stelar transport.     

Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Kirchner) Jordan

This study is the first report assessing the effect of soil inoculation on the signalling interaction of Bradyrhizobium japonicum, arbuscular mycorrhizal fungi (AMF) and soybean plants throughout the early stages of colonisation that lead to the tripartite symbiosis. In a study using soil disturbance to produce contrasting indigenous AMF treatments, the flavonoids daidzein, genistein and coumestrol were identified as possible signals for regulating the establishment of the tripartite symbiosis. However, it was unclear whether soil disturbance induced changes in flavonoid root accumulation other than through changing the potential for AMF colonization. In this study, soil treatments comprising all possible combinations of AMF and B. japonicum were established to test whether (1) modifications in root flavonoid accumulation depend on the potential for AMF colonization, and (2) synthesis and accumulation of flavonoids in the roots change over time as a function of the early plant-microbial interactions that lead to the tripartite symbiosis. The study was comprised of two phases. First, maize was grown over 3-week periods to promote the development of the AM fungus Glomus clarum. Second, the interaction between soybean, G. clarum and B. japonicum was evaluated at 6, 10, 14 and 40 days after plant emergence. Root colonization by G. clarum had a positive effect on nodulation 14 days after emergence, producing, 30% more nodules which were 40% heavier than those on roots solely inoculated with B. japonicum. The tripartite symbiosis resulted in 23% more N₂ being fixed than did the simpler symbiosis between soybean and B. japonicum. The presence of both symbionts changed accumulation of flavonoids in roots. Daidzein and coumestrol increased with plant growth. However, development of the tripartite symbiosis caused a decrease in coumestrol; accumulation of daidzein, the most abundant flavonoid, was reduced in the presence of AMF.     

Strong bottom-up and weak top-down effects in soil: nematode-parasitized insects and nematode-trapping fungi

The soils of the Bodega Marine Reserve (BMR, Sonoma County, California) contain many nematode-trapping fungi and many ghost moth larvae parasitized by entomopathogenic nematodes. The current study determined whether these nematode-parasitized moth larvae, which can produce very large numbers of nematodes, enhanced the population densities of nematode-trapping fungi and whether the fungi trapped substantial numbers of nematodes emerging and dispersing from moths. Wax moths were used in place of ghost moths because the former are easier to obtain. When nematode-parasitized moth larvae were added to laboratory microcosms containing BMR field soil, the population densities of four nematode-trapping fungi increased substantially. The greatest increase in population density was by Arthrobotrys oligospora, which uses adhesive networks to capture nematodes. A. oligospora population density increased about 10 times when the added moth larvae were parasitized by the nematode Heterorhabditis marelatus and about 100 times when added moth larvae were parasitized by the nematode Steinernema glaseri. Other trapping fungi endemic to the soil and enhanced by nematode-parasitized moth larvae included Myzocytium glutinosporum, Drechslerella brochopaga, and Gamsylella gephyropaga, which produce adhesive spores, constricting rings, and adhesive branches, respectively. The data suggest that the previously documented abundance and diversity of nematode-trapping fungi in BMR soil can be explained, at least in part, by nematode-parasitized insects, although that inference requires further studies with ghost moths. The strong bottom-up enhancement of nematode-trapping fungi was not matched by a strong top-down suppression of nematodes, i.e. the fungi trapped fewer than 30% of dispersing nematodes.     

Mycorrhizal communities in relation to biomass production and nutrient use efficiency in two varieties of Douglas fir (Pseudotsuga menziesii var. menziesii and var. glauca) in different forest soils

To investigate the role of arbuscular and ectomycorrhizas for growth and nutrition, Douglas fir (Pseudotsuga menziesii), a species capable of establishing both types of symbioses, was used. Seedlings of two varieties of Douglas fir, var. menziesii (DFM) and var. glauca (DFG), differing in biomass production under non-mycorrhizal conditions, were planted in two soils of different nutrient status without preceding Douglas fir cultivation. After 2 years, the abundance of ectomycorrhizas was significantly higher on DFM than on DFG roots and higher in nutrient rich than in poor soil. Independent of the abundance of ectomycorrhiza colonization, roots of both Douglas fir varieties contained in most cases a minimum of six to nine different fungal species identified by ITS sequencing, which displayed both soil- and seed origin-specific patterns. Rhizopogon vinicolor was associated with DFM, whereas Cadophora finlandia, Sebacinaceous sp., Tricholoma sp. and a Tuber sp. were more frequently found on DFG roots. Ectendomycorrhizas were also identified and included under ectomycorrhiza for determination of nutrient relations. Net primary productivity and nitrogen-use efficiency were positively correlated with the degree of ectomycorrhiza colonization of Douglas fir seedlings suggesting that nitrogen accumulation did not keep pace with biomass production despite increased ectomycorrhizal colonization. Phosphorus-use efficiency was negatively correlated with the abundance of arbuscular mycorrhizas, suggesting higher efficiency of these fungi than of ectomycorrhizas for phosphorus supply to the host. DFM, which had higher inherited growth capacities than DFG, displayed higher ectomycorrhizal colonization than DFG. In our experimental design the physiology of the host tree and soil properties, but not the diversity of fungi present on roots, were decisive factors for formation and abundance of ectomycorrhiza.     

Amoebae from a take-all suppressive soil which feed on Gaeumannomyces graminis tritici and other soil fungi

Amoebae were isolated from soil of the Waite Institute permanent pasture plot which is suppressive to take-all of wheat. Nine species of amoebae belonging to eight genera were tested for their mycophagy against Gaeumannomyces graminis var. tritici, Cochliobolus sativus and Phytophthora cinnamomi. Members of the genera, Gephyramoeba, Mayorella, Saccamoeba, Thecamoeba and an unidentified species of the order Leptomyxida, were mycophagous. Feeding of mycophagous amoebae and their ability to perforate and lyse melanized propagules of fungi are discussed.     

Calcium concentrations of soil affect suppressiveness against Aphanomyces root rot of pea

The potential for field soils to cause Aphanomyces root rot of pea (Pisum sativum) was estimated for a large number of samples from commercial pea fields over a period of 5 years, using a greenhouse bioassay. The aim of the research project was to gain a mechanistic understanding of soil suppressiveness to the disease. Regression analysis showed that of the measured soil variables (Ca, Mg, K, P, pH), soil Ca concentrations had the strongest (negative) correlation with disease prevalence, and also a significant negative correlation with disease severity in samples with confirmed presence of the disease. Greenhouse bioassays using a set of non-infested soils inoculated with artificially produced oospore inoculum of the casual organism Aphanomyces euteiches, showed a similar negative correlation between soil Ca content and disease severity. Disease severity was not consistently affected by soil sterilisation, but was lowered by the addition of two different Ca salts. In contrast, addition of sodium bicarbonate to two soils lowered the content of water-soluble Ca in the soils and increased disease severity. Studies of cultures of A. euteiches exposed to varying Ca concentrations in vitro showed that zoospore production was inhibited at submillimolar concentrations, while mycelial growth was stimulated or unaffected. We conclude that free Ca is a major variable controlling the degree of soil suppressiveness against A. euteiches, and that inhibition of zoospore production from oospores is a possible mechanism.     

Mycoparasitism by Pythium oligandrum and P. acanthicum

Isolates of the reported mycoparasites Pythium oligandrum, P. acanthicum and P. periplocum markedly reduced growth and cellulolysis by Botryotrichum piluliferum, grew rapidly across agar plates precolonized by Phialophora radicicola var radicicola (sensu Deacon) and, where tested (not P. periplocum), were non-pathogenic towards higher plants. Isolates of P. echinulatum, P. mamillatum. P. megalacanthum, P. spinosum, P. ultimum and one isolate of P. acanthicum behaved differently from the mycoparasites and could, themselves, be placed in two groupings in these tests. It is suggested that the ability or otherwise to grow on Phialophora-precolonized agar plates may help to distinguish broad biological groupings within the genus Pythium, but these groupings may cut across conventional taxonomic ones.One isolate of P. acanthicum was tested for its effects on a range of cellulolytic fungi: it reduced their growth to different extents, as did P. oligandrum.Plates of potato-dextrose agar precolonized by Phialophora radicicola were used to isolate selectively P. oligandrum and similar fungi from soils, but the use of hemp seed baits in conjunction with precolonized plates was less selective for these fungi.Straw pieces precolonized by P. oligandrum and buried in soil decomposed at the same rate as virgin straws or those precolonized by P. ultimum or Mucor hiemalis. Subsequently, Stachyholrys atra appeared to colonize straws more frequently from soil, and Fusarium spp. less so, in the presence of P. oligandrum than in its absence. In the laboratory, P. oligandrum was antagonized by Slachyholrys, whereas Fusarium spp. were frequently overgrown by the Pythium.     

The incidence of Gaeumannomyces graminis var. Tritici and Phialophora radicicola var. Graminicola on wheat grown after different cropping sequences

The effects of three treatment cropping sequences (fallow, lucerne or grass-clover ley) on the incidence of Gaeumannomyces graminis var. tritici and Phialophora radicicola var. graminicola were measured in a field experiment. Increases in G. g. tritici population in the soils of the first wheat crop and the incidence of take-all in the second wheat crop were greater after fallow or lucerne than after grass-clover. These differential increases were not associated with differences in survival of G. g. tritici during the treatment cropping but were correlated negatively with the population of P.r. graminicola in the soil. After the third wheat crop the P. r. graminicola population after grass-clover had decreased and take-all was as prevalent as after fallow or lucerne.