Compositional shifts of bacterial groups in a solarized and amended soil as determined by denaturing gradient gel electrophoresis

Soil solarization is a widespread, nonchemical agricultural practice for disinfesting soils, which is often used in combination with organic amendment, and whose action represents an important factor impacting on soil bacterial communities structure and population dynamics. The present study was conducted to investigate whether and to which extent a 72-day plot-scale soil solarization treatment, either combined or not with organic amendment, could stimulate compositional changes in the genetic structure of indigenous soil bacterial communities. Soil solarization with transparent polyethylene film, in combination or not with farmyard manure addition, was carried out during a summer period on a clay loam agricultural soil located in Southern Italy. Soils from a four-treatment (NS, nonsolarized control soil; S, solarized soil; MA, manure-amended nonsolarized soil; MS, manure-amended and solarized soil) plot block were sampled after 0, 8, 16, 36 and 72 days. Compositional shifts in the genetic structure of indigenous soil bacterial communities were monitored by denaturing gradient gel electrophoresis (DGGE) fingerprinting of 16S rRNA gene fragments amplified from soil-extracted community DNA using primers specific for Bacteria, Actinomycetales, α- and β-Proteobacteria. Changes in soil temperature, pH, and electrical conductivity (EC_1:1) were also monitored from 0 to 72 days. Beneath the polyethylene film the average soil temperature at 8-cm depth reached 55 °C compared to 35 °C in nonsolarized soil. In general, without amendment both soil pH and EC_1:1 were not significantly affected by solarization, whereas in manured plots either variables were greatly increased (from 7.0 to 8.0 pH and from 271 to 3021 μS cm⁻¹ EC_1:1), and both showed long-lasting effects due to soil solar heating. The eubacterial DGGE profiles revealed that soil solarization was the main factor inducing strong time-dependent population shifts in the community structure either in unamended or amended soils. Conversely, the addition of organic amendment resulted in an altered bacterial community, which remained rather stable over time. A similar behaviour was also observed in the DGGE patterns of β-proteobacterial and actinomycete populations, and also, albeit to a lesser extent, in the DGGE profiles of α-Proteobacteria. An increased bacterial richness was evidenced by DGGE fingerprints in 16- and 36-day samplings, followed by a decrease appearing in 72-day samplings. This could be explained, other than by a direct thermal effect on soil microflora, by solarization-induced changes in the physico-chemical properties of soil microbial habitats or by other ecological factors (e.g. decreased competitiveness of dominating bacterial species, reduced grazing pressure of microfaunal predators, increased nutrient availability).     

Inactivation of Escherichia coli in soil by solarization

Abstract

Contamination of agricultural soil by fecal pathogenic bacteria poses a potential risk of infection to humans. For the biosafety control of field soil, soil solarization in an upland field was examined to determine the efficiency of solarization on the inactivation of Escherichia coli inoculated into soil as a model microorganism for human pathogenic bacteria. Soil solarization, carried out by sprinkling water and covering the soil surface with thin plastic sheets, greatly increased the soil temperature. The daily average temperature of the solarized soil was 4–10°C higher than that of the non-solarized soil and fluctuated between 31 and 38°C. The daily highest temperature reached more than 40°C for 8 days in total in the solarized soil during the second and third weeks of the experiment. Escherichia coli in the solarized soil became undetectable (< 0.08 c.f.u. g^?1 dry soil) within 4 weeks as a result, whereas E. coli survived for more than 6 weeks in the non-solarized soil. Soil solarization, however, had little influence on the total direct count and total viable count of bacteria in the soil. These results indicate that soil solarization would be useful for the biosafety control of soil contaminated by human pathogens via immature compost or animal feces.     

Microbial community response to soil solarization in Nepal's rice-wheat cropping system

The Indo-Gangetic Plains of South Asia support 13.5 million hectares of rice-wheat cropping systems, which currently feed over one billion people. Intensified agriculture has resulted in a more than two-fold increase in rice and wheat yields since the 1970s; however, this continuous cropping has also exacerbated weed, pest and disease problems. Soil solarization is an accessible, low-risk management practice for small-holder farmers that has ameliorated these problems in some settings and has the potential to dramatically improve yields. Field trials were conducted at two sites in Nepal to test whether soil solarization: (i) had a lasting effect on soil bacterial, fungal and nematode communities; (ii) altered the rhizosphere communities of rice nursery seedlings and (iii) improved crop growth and yield in the rice-wheat cropping system. Rice seedlings were grown in nursery plots that were solarized for 28 days or left untreated and were transplanted to field plots that were also either solarized for 28 days or not in a randomized complete block design with four replications. Rice was grown to maturity and harvested, followed by a complete wheat cropping cycle. Solarization of main field plots increased counts of fungal propagules and decreased root galling and nematode counts and decreased weed biomass. Terminal restriction fragment length polymorphism (T-RFLP) analyses of extracted soil DNA revealed significant shifts in fungal community composition following soil solarization, which was sustained throughout the entire rice cropping cycle at both field sites. The bacterial community composition was similarly affected, but at only one of the two sites. Despite the observed changes in soil microbial community composition over more than one cropping period, solarization had no impact on crop productivity at either site. Nevertheless, such changes in soil microbial communities in response to solarization may be responsible for increased yields observed at other sites with greater pathogen pressure. This practice has shown promising results in many farmers’ fields in South Asia, but further elucidation of the mechanisms by which solarization increases productivity is needed.     

The effects of mancozeb and lindane on the soil microfauna of a spruce forest: A field study using a completely randomized block design

Summary The effects of mancozeb (fungicide) and lindane (insecticide) were investigated in active soil ciliates, testaceans, rotifers, and nematodes. The effects were evaluated 1, 7, 15, 40, 65, and 90 days after application of a standard and a high (10x) dose. Individual numbers were estimated with a direct counting method. Mancozeb, even at the high dose, had no pronounced acute or long-term effects on absolute numbers of the taxa investigated. The number of ciliate species, which decreased 1 day after treatment with the normal dose (0.05 <P < 0.1), soon recovered. However, the community structure of ciliate species was still slightly altered after 90 days. Testaceans were not reduced before day 15 at the higher dose or before day 40 at the normal one (0.05 <P < 0.1). A normal dose of lindane caused acute toxicity in ciliates and rotifers (P < 0.05) but the latter soon recovered. The number and community structure of ciliate species were still distinctly altered after 90 days (0.05 <P <0.1), indicating the critical influence of lindane. Testaceans were reduced only after day 15, and nematodes only on day 40 (0.05 <P < 0.1). At the high dose of lindane severe long-term effects occurred in soil moisture, total rotifers (P < 0.05), total nematodes (0.05 <P <0.1), and in the structure of the ciliate community. Generally, there were marked differences in the effect of the normal and the high dose of lindane but not with mancozeb. Ciliates showed very pronounced changes after the pesticide applications, indicating their usefulness for testing biocides under field conditions. Testaceans were more resistant than ciliates.     

Inactivation of Escherichia coli in soil by solarization

Contamination of agricultural soil by fecal pathogenic bacteria poses a potential risk of infection to humans. For the biosafety control of field soil, soil solarization in an upland field was examined to determine the efficiency of solarization on the inactivation of Escherichia coli inoculated into soil as a model microorganism for human pathogenic bacteria. Soil solarization, carried out by sprinkling water and covering the soil surface with thin plastic sheets, greatly increased the soil temperature. The daily average temperature of the solarized soil was 4–10°C higher than that of the non-solarized soil and fluctuated between 31 and 38°C. The daily highest temperature reached more than 40°C for 8 days in total in the solarized soil during the second and third weeks of the experiment. Escherichia coli in the solarized soil became undetectable (< 0.08 c.f.u. g⁻¹ dry soil) within 4 weeks as a result, whereas E. coli survived for more than 6 weeks in the non-solarized soil. Soil solarization, however, had little influence on the total direct count and total viable count of bacteria in the soil. These results indicate that soil solarization would be useful for the biosafety control of soil contaminated by human pathogens via immature compost or animal feces.     

The Effects of Soil Solarization and Compost on Soil Suppressiveness against Fusarium Oxysporum f. sp. Melonis

Soil suppressiveness against Fusarium was tested using solarized and non-solarized soils combined with composts of three maturation levels, and a non-amended control. The soils were sampled on three dates: after previous year solarization but before current year solarization (0 weeks), at the end of the solarization period of the current year (4 weeks), and 4 weeks later (recovery time). Melon seedlings were inoculated with Fusarium spores and disease severity was assessed. The study showed a reduction of soil suppressiveness capacity against Fusarium oxysporum f. sp. melonis after 1 year of solarization (0 weeks). Fusarium disease severity in artificially inoculated melon plants, expressed by area under the disease progress curve, was higher in solarized soil than in non-solarized soil. Compost addition lowered the disease severity, both in the solarized and in the non-solarized soils. However, suppression was not obtained at the end of the solarization period, whereas compost beneficial effect was found at this time.     

Use of soil solarization to control root rots in gerberas (Gerbera jamesonii)

Summary An investigation was conducted during the summer months of 1986–1987 and 1987–1988 in Western Australia to evaluate the effect of soil solarization on the control of root rot of gerbera an also on the microbial and nutrient status of the soil. Infested soil cores were sampled from a site where root-rot was a severe problem and were removed to a non-infested site where they were subjected to soil solarization or fumigation. Soil solarization resulted in reduced root rot (root disease index 28.6%) in comparison to the untreated control (52.0%) 8 months after planting. Plants in the fumigated plots had 15.8% less disease than those in solarized plots. Solarization increased the total numbers of bacteria and actinomycetes, and the proportion of bacteria and fungi antogonistic to Fusarium oxysporum, F. solani and Rhizoctonia solani. The proportion of actinomycetes antagonistic to these fungi, however, did not differ between solarized and control soil treatments. There was a significant reduction in disease in plants grown in infested fumigated soil to which a 10% concentration of solarized soil had been added, suggesting the development of microbial suppression in solarized soil. Phytophthora cryptogea was eradicated to 30 cm by solarization as well as by fumigation. Solarization eliminated R. solani but not F. oxysporum to a soil depth of 10 cm. Solarization increased the levels of NO _n3 ^– -N and NH₄ ⁺-N in soil, but did not affect the concentrations of PO₄ ^3–, K⁺, Fe²⁺, organic C and pH. Yield (as number of flowers per plant) was increased by soil solarization and by fumigation.Increased yields and decreased disease severity in the solarized plots could have been caused by (1) a reduction in the infectivity of the infested soils, (2) an increase in the suppressiveness of the soil, and (3) an increased available of plant nutrients.     

Soil solarization: Effects on soil properties,crop fertilization and plant growth

Summer solarization of six wet field soils of four different textures raised soil temperatures by 10–12°C at 15cm depth. Soil solarization increased concentrations of NO^?₃N and NH⁺₄N up to six times those in nontreated soils. Concentrations of P, Ca²⁺, Mg²⁺ and electrical conductivity (EC) increased in some of the solarized soils. Solarization did not consistently affect available K⁺, Fe³⁺, Mn²⁺, Zn²⁺, Cu²⁺, Cl^? concentrations, soil pH or total organic matter. Concentrations of mineral nutrients in wet soil covered by transparent polyethylene film, but insulated against solar heating, were the same as those in nontreated soil. Increases in NO^?₃N plus NH⁺₄N were no longer detected in fallowed soils 9 months after solarization. No significant correlation between mineral-nutrient concentration in plant tissue and plant growth was found. Fresh and dry weights of radish, pepper and Chinese cabbage plants usually were greater when grown in solarized soils than in nontreated soils. Fertilization of solarized soils sometimes resulted in greater plant growth responses than observed in solarized but nonfertilized soils.     

Effect of soil solarization on subsequent nitrification activity at elevated temperatures

Soil solarization is a nonchemical method of soil disinfection achieved by covering the soil surface with sheets of vinyl plastic to generate elevated soil temperature, generally over 45°C. Such elevated temperatures may be detrimental to some nitrifying microorganisms and favorable to others. However, little information exists to indicate how nitrification activity in soil is affected after solarization. We performed several experiments to investigate the effects of soil solarization on nitrification activity. We found that: (1) if a soil was subjected to pretreatment of 45 or 50°C for as little as 1 d, nitrification activity in a subsequent incubation at 30°C was less than that of a soil that did not receive any high-temperature pretreatment. However, if a soil received pretreatments of 45 or 50°C for more than 7 d, nitrification activity in a subsequent incubation at 45 or 50°C was greater than that of soil that did not receive high temperature pretreatment. (2) Nitrification activity in three kinds of soil taken from 0–5 cm depth after solarization treatment was greater at 45°C than 30°C. (3) Nitrification activity at 45°C in soil that had received solarization in the preceding year was greater than that in soil that had not been subjected to solarization. This was consistent with the fact that the population densities of ammonia oxidizers were greater in soils that had been subjected to solarization. These results suggest that soil solarization induces nitrifying microorganisms that are more active at 45–50°C than they are at 30°C, and that the effect of solarization on nitrification persists until the next crop season.     

Evaluation of soil solar heating for control of damping-off fungi in two forest nurseries in France

Field experiments were carried out at two different forest nurseries during the summer of 1994 to examine the efficacy of soil solarization for the control of damping-off. Both soils hosted Pythium spp., Fusarium spp. and Rhizoctonia solani as damping-off agents. Soil samples from solarized, steamed, fumigated and untreated plots were periodically collected and assayed for soil infectivity. Solarization with a double layer of polyethylene film was as effective as steaming or fumigation in reducing soil infectivity in the uppermost layer. During July the temperature of covered beds rose as high as 50°C at a soil depth of 5cm. The method achieved good control of Pythium spp., the main cause of damping-off at both nurseries, whereas Fusarium spp. were more tolerant. The association of Trichoderma spp. with a reduction of soil infectivity at the last sampling date strongly suggested that biocontrol processes were induced after solarization. Soil solarization provides a suitable method for control of damping-off. Received: 29 October 1996     

Population dynamics and ecology of ciliates (Protozoa,Ciliophora) in an anoxic rice field soil

Wetland rice fields cover 1.46 million km² globally; the flooded soil of these fields is largely anoxic. While biogeochemistry and microbiology have been studied in detail, the microbial loop and especially the dynamics and function of ciliates are largely unknown. We used anoxic microcosms prepared with soil from an Italian rice field and recorded species composition, abundance and volume of ciliates together with numbers, volume and size distribution of bacteria. Ciliates were the dominating protists observed in the microcosms, but could be outnumbered by flagellates if the soil was amended with rice straw. The number of ciliate taxa was 23. Metopus species were dominant, but 16 of the species recorded in the anoxic soil were facultative anaerobes. Another 29 species were found in accompanying experiments that included the oxic soil surface. Total abundance in the anoxic soil was on average 110 cells g^–1 dry weight and comparable to that of other soils. The population of ciliates declined around 30 days after flooding, but recovered later. The period before the population declined was characterized by a rapid species turnover, many facultative anaerobes and large species. After recovery, the average cell size was much smaller, but even then a facultative anaerobe, Plagiacampa pentadactyla , was common. About 90% of all species were bacteriovores while the others—mainly Gymnostomatidae—were predators. Grazing ciliates may have controlled bacteria during the first 5 days after flooding, as could be shown by a negative correlation between the respective volumes and by the size spectra of the bacteria.     

Effect of organic mulches on soil bacterial communities one year after application

The application of organic mulches as a soil cover is effective in improving the quality of soil. However, very little information is available on the effect of mulches on the soil microbial community. In this study, we investigated the effect of various organic mulches on soil dehydrogenase activity (DHA) and microbial community structures in the top 1 cm and 5 cm below the soil surface 1 year after application of the mulches. DHA was stimulated at both depths in plots mulched with grass clippings (GC), but was not significantly different from the control for the other mulch treatments. Fatty acid methyl ester (FAME) analysis and denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction-amplified 16S rDNA fragments were used to assess changes in the soil microbial community structure. Cluster analysis and principle component analysis of FAME profiles showed that only soil mulched with pine chips distinctively clustered from the other treatments. At the soil surface, bacterial DGGE profiles revealed that distinct shifts in several bacterial populations occurred in soils mulched with GC and eucalyptus yardwaste (EY), while DGGE profiles from soil at the 5 cm depth revealed no distinct changes. Changes in bacterial diversity at the soil surface under different mulches were calculated based on the number of bands in the DGGE profile using the Shannon-Weaver index of diversity ( H). Compared to the control ( H =0.9), the GC- and EY-treated soils showed slightly increased bacterial diversity, with an H of 1.1 and 1.0, respectively. These results indicate that the long-term effect of organic mulches on the soil microbial activity and community structure is highly dependent upon the type of mulch and is mostly exerted in the top few centimeters of the soil profile.     

Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues

The impact of organic compounds present in different kinds of organic fertilizers, i.e., anaerobically digested household waste, composted organic household waste, swine manure, and cow manure, on microbial communities in arable soil was investigated using microcosms. Soil was amended with dried residues or organic extracts of the residues and incubated for 12 weeks at 25°C. The microbial community composition was investigated by phospholipid fatty acid (PLFA) analysis, and the community of ammonia-oxidizing bacteria (AOB) was assessed by denaturing gradient gel electrophoresis (DGGE) of 16S rDNA fragments, followed by sequencing. All dried residues increased the AOB activity, determined as potential ammonia oxidation, whereas the organic extracts from the thermophilically digested waste and the swine manure caused a decreased potential activity. However, no differences in the DGGE banding patterns were detected, and the same AOB sequences were present in all samples treated with the residue extracts. Moreover, the PLFA composition showed that none of the residue additions affected the overall microbial community structure in the soil. We conclude that the AOB community composition was not affected by the organic compounds in the fertilizers, although the activity in some cases was.     

Response of soil microfauna to organic fertilisation in sandy virgin soils of coastal dunes

In young white-dune soils with a very low content of organic matter, the influence of organic fertilisation on microfauna, ciliates and nematodes, was investigated. Three fertilisers - straw, rabbit dung, and wheat bran - were added to the soil in order to mimic natural conditions in older dunes. Abundances of nematodes and ciliates were significantly increased with respect to controls, where only about 3 individuals g^-1 dry matter could be counted. The numbers of nematodes and ciliates reached 103 and 77 ind g^-1 in the bran treatment, respectively. Stimulation of microfaunal production from straw and dung fertilisation was less pronounced but also significant. The results show that nematodes and ciliates react quickly to favourable conditions with excystment and production up to the abundance values of dune soils with natural organic matter accumulation. Considering the species composition of ciliates, it becomes clear that, in spite of the fast development of ciliate species, the community does not develop into natural communities of higher organic matter soils within 3 months. The increase in abundance is mainly due to rapid development of a few bacterial feeding species so that dominance concentration is much more pronounced. Organic matter concentration is an important factor for microfaunal abundance, but the quality of organic matter and the age of its accumulation seem to determine ciliate community composition. It is concluded that, due to the fertilisation, the habitat character for ciliates has evolved from an adverse habitat to a higher favourableness but lower predictability and thus has changed from A- to r-selection, whereas in natural development of the dunes it develops from A- to K-selection.     

Displacement of native rhizobia nodulating chickpea (Cicer arietinum L.) by an inoculant strain through soil solarization

Summary Soil solarization greatly reduced the native chickpea Rhizobium population. With inoculation, it was possible to increase the population of the Rhizobium in solarized plots. In the 1st year, 47% nodulation was obtained with chickpea inoculant strain IC 59 when introduced with a cereal crop 2 weeks after the soil solarization and having a native Rhizobium count of <10 g^-1 soil, and only 13% when introduced 16 weeks after solarization at the time the chickpeas were sown, with 2.0×10² native rhizobia g^-1 soil. In the non-solarized plots inoculated with 5.6×10³ native rhizobia g^-1 soil, only 6% nodulation was obtained with the inoculant. In the succeeding year, non-inoculated chickpea was grown on the same plots without any solarization or Rhizobium inoculation. The treatment that showed good establishment of the inoculant strain in year 1 formed 68% inoculant nodules. Other treatments indicated a further reduction in inoculant success, from 1%–13% to 1%–9%. Soil solarization thus allowed an inoculant strain to successfully displace the high native population in the field and can serve as a research tool to compare strains in the field, irrespective of competitive ability. In year 1, Rhizobium inoculation of chickpea gave increased nodulation and increased plant growth 20 and 51 days after sowing, and increased dry matter, grain yield, and grain protein yield at maturity. These beneficial effects of inoculation on plant growth and yield were not measured in the 2nd year.Submitted as Journal Article No. JA 945 by the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Andhra Pradesh 502 324, India     

黑土长期定位试验原状土搬迁对土壤真菌群落多样性的影响

采用PCR-DGGE及其特异性条带克隆测序的方法,研究黑土长期定位试验原状土整体搬迁对土壤真菌群落结构多样性的影响。对同为小麦茬的搬迁前(2010年)和搬迁后(2013年)土壤真菌群落结构的研究表明:DGGE图谱中搬迁前后2个土层不同处理的样品间条带的数量和亮度存在部分变化;对DGGE图谱进行聚类分析可得,真菌群落结构在2个土层各处理中搬迁前后有部分变化,其中MNPK处理的变化较为显著;对DGGE图谱主成分分析结果可得,在0~20 cm土层中各处理虽然搬迁前和搬迁后产生分异,但搬迁前后的3年中处理间的分布规律相似,在20~40 cm土层中搬迁前和搬迁后MNPK和CK处理的分布规律发生了变化。搬迁前和搬迁后土壤真菌群落结构受到搬迁扰动的影响远小于耕作方式、植被类型、土壤肥力等的影响。     

A DGGE-cloning method to characterize arbuscular mycorrhizal community structure in soil

Although arbuscular mycorrhizal fungi (AMF) are crucial for ecosystem functioning, characterizing AMF community structure in soil is challenging. In this study, nested polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) were combined with cloning of fungal 18S ribosomal gene fragments for the rapid comparison of AMF community structure in soil. Reference AMF isolates, representing four major genera of AMF, were used to develop the method. Sequential amplification of 18S rDNA fragments by nested PCR using primer pairs AM1-NS31 and Glo1-NS31GC followed by DGGE analysis yielded a high-resolution band profile. In parallel, 18S rDNA fragment clone libraries were constructed and clones screened by DGGE. Sequence identity was inferred by matching the electrophoretic mobility of the sample fingerprint bands to that of bands from individual clones. The effectiveness of this approach was tested on soil samples from different ecosystems, yielding reproducible, complex DGGE band patterns specific to each site. The coupling of PCR–DGGE with clone library analysis provides a robust, reliable, and precise means to characterize AMF community structure in soils.     

DGGE fingerprinting of culturable soil bacterial communities complements culture-independent analyses

Culture-dependent DGGE (CD DGGE) fingerprinting of the 16S rRNA gene was used to characterize mixed bacterial communities recovered on agar plates. Using R2A Agar as a growth medium, CD DGGE analysis resulted in clear banding patterns of sufficient complexity (16-32 major bands) and reproducibility to investigate differences in bacterial communities in a silt loam soil. Replicate CD DGGE profiles from plates inoculated with less-dilute samples (10⁻³) had a higher band count and were more similar (72-77%) than profiles from more-dilute samples (51-61%). Different culture media and incubation conditions resulted in distinct community fingerprints and increased the cumulative number of unique bands detected. When CD DGGE fingerprints were compared to profiles constructed from 16S rRNA genes obtained from culture-independent clone libraries (CB DGGE profiles) 34% of the bands were unique to the culture-dependent profiles, 32% were unique to the culture-independent profiles and 34% were found in both communities. These data demonstrate that culture-independent DGGE profiles are supplemented by the distinct bands detected in culture-dependent profiles. CD DGGE can be a useful technique to follow the dynamics of distinct culturable fractions of the soil bacterial community.     

Fluctuations in the abundance of ammonia oxidizers and the contents of inorganic nitrogen in solarized soil

Solarization makes a great impact on the abundance of ammonia oxidizers and nitrifying activity in soil. To elucidate fluctuations in the abundance of ammonia oxidizers and nitrification in solarized soil, copy numbers of amoA gene of ammonia-oxidizing bacteria (AOB) and archaea (AOA), viable number of ammonia oxidizers and inorganic nitrogen contents were investigated in greenhouse experiments. The copy number of amoA gene and the viable number of ammonia oxidizers were determined by the quantitative polymerase chain reaction and most probable number methods, respectively. Abundance of AOB based on the estimation of amoA gene copy numbers and viable counts of ammonia oxidizers was decreased by the solarization treatment and increased during the tomato (Solanum lycopersicum L.) cultivation period following the solarization. Effect of solarization on the copy number of amoA gene of AOA was less evident than that on AOB. The proportion of nitrate in inorganic nitrogen contents was declined by the solarization and increased during the tomato cultivation period following the solarization. Positive correlations were found between the proportion of nitrate in inorganic nitrogen content and the copy number of bacterial or archaeal amoA gene or the viable number of ammonia oxidizers; the copy number of bacterial amoA gene showed a strong correlation with the viable number of ammonia oxidizers. The present study revealed influences of solarization on the fluctuation in the abundance of ammonia oxidizers and dynamics of inorganic nitrogen contents in soil and the results indicate that the determination of amoA gene of AOB is possibly a quick and useful diagnostic technique for evaluating suppression and restoration of nitrification following solarization.     

Soil solarization with biodegradable materials and its impact on soil microbial communities

The application of soil solarization (SS), one of the most promising techniques for the control of soilborne pathogens, is seriously limited by the drawback regarding the disposal of the used plastic materials. A possible solution to this problem is the use of biodegradable plastics. The aim of this study was to make comparisons between the impact of SS performed with biodegradable materials and that of SS with plastic films and other pest management techniques (i.e. organic matter amendment, calcium cyanamide and Dazomet fungicide application) on crop productivity, soilborne disease incidence, weed suppression, and soil chemical (total N, NH₄-N, nitrate, available phosphorus, organic matter, hydrolysis of fluorescein diacetate) and microbial (cultivable Pseudomonas, DGGE fingerprinting of bacterial 16S- and fungal 28S rRNA gene fragments from total soil community DNA) parameters. We carried out field experiments in two types of soil with different textures (clay and sand) artificially inoculated with Fusarium oxysporum f.sp. lycopersici (vs. tomato) and Sclerotinia minor (vs. lettuce).The temperature of soils covered with solarizing materials was always higher than that of bare soils, but plastic cover was more effective and consistent in rising soil temperature compared to biodegradable materials. Plant growth promotion by SS was limited, especially compared to Dazomet and organic matter applications, and a positive effect was observed only for lettuce in the clay soil. Differently, both plastic and biodegradable solarizing materials were effective in reducing lettuce drop caused by S. minor. Weed development was significantly suppressed by Dazomet application and SS with plastic film, while control with biodegradable materials was limited. SS had a variable and limited effect on chemical and microbial parameters, with a general tendency to reduce richness of bacteria and fungi. Dazomet caused the most pronounced reduction of the microbial community diversity in both soil types and a significant stimulation of the fluorescent Pseudomonas group. Organic amendment significantly enhanced the organic matter content, the hydrolysis of fluorescein diacetate and the Pseudomonas population. Among all measured soil parameters, the size of the fluorescent Pseudomonas population emerged as the most important factor affecting crop productivity.The results of this experimentation show the potential of using biodegradable solarizing materials in place of plastic films, but also indicate the need for improving their properties to obtain performances comparable to those of other pest management techniques.