Carbon assimilation and microbial activity in soil

In order to characterise the term microbial ?activity”? three different microbial populations belonging to a luvisol (I), a phaeozem (II) and a rendzina (III) were used for studying kinetic parameters such as substrate affinity, growth rate, yield and turnover time and the metabolic quotient of basal respiration. Glucose was used as a carbon source. Specific growth rate values (μ) varied between 0.0037 and 0.015 h^?1 depending on soil type and glucose concentration and were far below the potential μ_max. The calculated turnover time was 3–11 days, respectively. The yield coefficient was in the range between 0.37 and 0.53. The maximal uptake rate of glucose–C of soil population (II) was 0.041 g C g^?1 biomass-C h^?1. The determined affinity constant (K_m) was 57 μg C g^?1 soil. The affinity to glucose was higher for the glucose-mediated CO₂ evolution with K_m values of 15.2 and 17.5 than for the glucose uptake system itself. The observed qCO₂ values of the basal respiration at temperature increments from 0 to 45° C were almost identical for the soils (I) and (II). The calulated Q₁₀ lay in the range between 1.4 and 2.0.     

Influence of vegetation types and soil properties on microbial biomass carbon and metabolic quotients in temperate volcanic and tropical forest soils

Abstract

There is limited knowledge about the differences in carbon availability and metabolic quotients in temperate volcanic and tropical forest soils, and associated key influencing factors. Forest soils at various depths were sampled under a tropical rainforest and adjacent tea garden after clear-cutting, and under three temperate forests developed on a volcanic soil (e.g. Betula ermanii and Picea jezoensis, and Pinus koraiensis mainly mixed with Tilia amurensis, Fraxinus mandshurica and Quercus mongolica), to study soil microbial biomass carbon (MBC) concentration and metabolic quotients (qCO₂, CO₂-C/biomass-C). Soil MBC concentration and CO₂ evolution were measured over 7-day and 21-day incubation periods, respectively, along with the main properties of the soils. On the basis of soil total C, both CO₂ evolution and MBC concentrations appeared to decrease with increasing soil depth. There was a maximal qCO₂ in the 0–2.5 cm soil under each forest stand. Neither incubation period affected the CO₂ evolution rates, but incubation period did induce a significant difference in MBC concentration and qCO₂ in tea soil and Picea jezoensis forest soil. The conversion of a tropical rainforest to a tea garden reduced the CO₂ evolution and increased the qCO₂ in soil. Comparing temperate and tropical forests, the results show that both Pinus koraiensis mixed with hardwoods and rainforest soil at less than 20 cm depth had a larger MBC concentration relative to soil total C and a lower qCO₂ during both incubation periods, suggesting that microbial communities in both soils were more efficient in carbon use than communities in the other soils. Factor and regression analysis indicated that the 85% variation of the qCO₂ in forest soils could be explained by soil properties such as the C:N ratio and the concentration of water soluble organic C and exchangeable Al (P < 0.001). The qCO₂ values in forest soils, particularly in temperate volcanic forest soils, decreased with an increasing Al/C ratio in water-soluble organic matter. Soil properties, such as exchangeable Ca, Mg and Al and water-soluble organic C:N ratio, were associated with the variation of MBC. Thus, MBC concentrations and qCO₂ of the soils are useful soil parameters for studying soil C availability and microbial utilization efficiency under temperate and tropical forests.     

Simulating short-term dynamics of non-increasing soil respiration rates by a model using Michaelis-Menten kinetics

Abstract

Short-term dynamics of soil respiration rates over time measured at hourly intervals during less than 12?h after microbial substrates were added to soils can be classified into first-order, zero-order and growth-associated types. To simulate the zero-order type respiration rates, a model using Michaelis-Menten kinetics is proposed, because this kinetics model includes a maximum respiration rate but no increase in microbial biomass. In this model, soil respiration by microorganisms was assumed to be the sum of the mineralization of easily available substrates (R), which include both added glucose (G) and substrates released by disturbance such as a mixing treatment (D) and constant mineralization under steady state conditions. By analyzing the short-term dynamics of previously published respiration rates for a Kazakh forest, a Japanese forest and a Japanese arable soils, none of which show any increase with time, the parameter values of z _r and D ₀, which indicate the ratio of respired to utilized R and the initial concentration of D, respectively, were estimated. This allowed simulation of the decreasing concentrations of R and estimation of the parameters V _max and K _M in the Michaelis-Menten equation. Simulations using the obtained parameter values matched the measured data well. Correlation coefficients (r ²) and root mean square errors (RMSE) indicated that the simulations usually matched the measured data, which included not only zero-order respiration rates but also first-order respiration rates. Therefore, the proposed model using Michaelis-Menten kinetics can be used to simulate the short-term dynamics of respiration rates, which show no increase over time, when easily available substrates would be added in soils.     

Microbial Activity of Cu Contaminated Soils and Effect of Lime and Compost on Soil Resiliency

In vineyards, the long-term use of copper fungicides has increased soil Cu concentrations that can adversely affect the number and activities of soil microorganisms. To better understand this phenomenon and to ameliorate such harmful effects, an incubation experiment was carried out with a sandy loam and a sandy soil to which increasing rates of CuSO₄ were added. By this treatment, the basal soil respiration (7-55%) and decomposition of added vine branches (46-86%) was inhibited. At the application rate of 500 mg Cu kg^?1, soil microbial biomass-C was inhibited (7-66%) in the sandy soil and stimulated (2-10%) in the sandy loam soil. The specific respiration rate was a reliable indicator for Cu stress, and it increased with time and higher Cu concentrations before lime and compost applications. Total number of bacteria and streptomycetes were also strongly inhibited. Fungal population was significantly more tolerant to copper toxicity than the bacteria. A stimulation of fungal population at a dose of 500 mg Cu kg^?1 in both soils was observed. A criterion such as “stimulation” lasting for more than 60 days can also be used as indication of Cu contamination of soils. The order of inhibition (on day 125) at a dose of 500 mg Cu kg^?1 soil was as follows: A. sandy loam soil (pH> 7.0) — fungi < biomass-C < basal soil respiration < bacteria < streptomycetes; B. sandy soil (pH< 6.0) — fungi < basal soil respiration < biomass-C < bacteria < streptomycetes. The application of lime increased soil recovering ability at a moderate rate (for CO₂ production – 22-70% and for biomass-C- 39-156%), but the combination of lime and compost significantly increased soil resiliency (for CO₂ production- 16-518% and for biomass-C- 103-693%). The soil resiliency assessed by number of bacteria in compost treatments was 30-120% in sandy loam soil and 92-700% in the sandy soil. Compost and lime application increased the number of streptomycetes from 52 to 500% in sandy loam soil and from 100 to 700% in sandy loam soil. Fungal population was less increased in sandy soil as compared to sandy loam soil. The ecological dose higher than 5% inhibition of microbial processes and microorganisms appears to be suitable to assess Cu contamination of soils. CO₂ production, biomass-C and specific respiration rate were less sensitive indicators as compared to streptomycetes and bacteria. It appears that compost application effectively promoted the recovery of soil microbial activity and soil fertility of Cu contaminated soils.     

Turnover time of microbial biomass carbon in Japanese upland soils with different textures

We investigated the turnover time of microbial biomass-C in Japanese upland soils with various textures and examined the soil physicochemical properties influencing their turnover time. Samples from five different soil types (sand-dune regosol, light-colored Andosol, humic Andosol, brown forest soil, and dark red soil) were taken from upland concrete-frame plots in the experimental field of Chiba University. Each soil amended with [U -¹³C] glucose was incubated for 80 d at 25°C. Microbial biomass-C and -¹³C in soil were periodically determined by the fumigation-extraction method. The longest turnover time of microbial biomass-C was observed in the dark red soil (215 d) followed by the humic Andosol (134 d), brown forest soil (97 d), and light-colored Andosol (83 d) and the shortest in the sand-dune regosol (45 d). The turnover time of microbial biomass-C was significantly correlated with the value of soil clay (R: 0.917*), CEC (R: 0.921*), and macroaggregate (R: 0.907*) contents, but not with the total-C content. The amount of microbial biomass-C showed a close correlation with the turnover time of microbial biomass-C, suggesting that the turnover time of microbial biomass-C is an important factor influencing the accumulation of microbial biomass-C in soil.     

Evaluation of the rates of soil organic matter mineralization in forest ecosystems of temperate continental,mediterranean, and tropical monsoon climates

The processes of the organic matter (OM) mineralization in forest soils developed under temperate continental (Moscow oblast, Russia), Mediterranean (the central and western parts of Spain), and tropical monsoon (southern Vietnam) climates were studied under laboratory conditions. The potential and specific rates of the OM mineralization (PR _min and PR _min/C_org, respectively), the ecophysiological parameters of the microbial communities status (C_mic, qCO₂, and C_mic/C_org), and the sensitivity of the rate of the OM mineralization to the rise in temperature were evaluated by the temperature coefficients (Q ₁₀) determined in the humus horizons (0–10 cm, without forest litter). The average values of PR _min for the climatic zones decreased in the following order: Mediterranean (57.1 ± 10.6 mg C/kg per day) > temperate continental (23.8 ± 7.1 mg C/kg per day) > tropical monsoon (10.4 ± 1.6 mg C/kg per day). The lowest resistance of the soil OM to mineralization as evaluated by the PR _min/C_org values was found in the Albeluvisol and Phaeozem of the temperate continental climate and in the Acrisol of the Mediterranean climate. The highest Q ₁₀ coefficients were attributed to the OM mineralization in the forest soils of the temperate continental climate. This allowed us to conclude that the observed and expected climate changes with an increase in the mean annual air temperature should lead to the maximum intensification of the OM mineralization processes in the forest soils of northern regions.     

Cold storage and laboratory incubation of intact soil cores do not reflect in-situ nitrogen cycling rates of tropical forest soils

Measurements of N transformation rates in tropical forest soils are commonly conducted in the laboratory from disturbed or intact soil cores. On four sites with Andisol soils under old-growth forests of Panama and Ecuador, we compared N transformation rates measured from laboratory incubation (at soil temperatures of the sites) of intact soil cores after a period of cold storage (at 5 °C) with measurements conducted in situ. Laboratory measurements from stored soil cores showed lower gross N mineralization and NH₄⁺ consumption rates and higher gross nitrification and NO₃⁻ immobilization rates than the in-situ measurements. We conclude that cold storage and laboratory incubation change the soils to such an extent that N cycling rates do not reflect field conditions. The only reliable way to measure N transformation rates of tropical forest soils is in-situ incubation and mineral N extraction in the field.     

Electron donors and acceptors influence anaerobic soil organic matter mineralization in tidal marshes

Anaerobic decomposition in wetland soils is carried out by several interacting microbial processes that influence carbon storage and greenhouse gas emissions. To understand the role of wetlands in the global carbon cycle, it is critical to understand how differences in both electron donor (i.e., organic carbon) and terminal electron acceptor (TEA) availability influence anaerobic mineralization of soil organic matter. In this study we manipulated electron donors and acceptors to examine how these factors influence total rates of carbon mineralization and the pathways of microbial respiration (e.g., sulfate reduction versus methanogenesis). Using a field-based reciprocal transplant of soils from brackish and freshwater tidal marshes, in conjunction with laboratory amendments of TEAs, we examined how rates of organic carbon mineralization changed when soils with different carbon contents were exposed to different TEAs. Total mineralization (the sum of CO₂ + CH₄ produced) on a per gram soil basis was greater in the brackish marsh soils, which had higher soil organic matter content; however, on a per gram carbon basis, mineralization was greater in the freshwater soils, suggesting that the quality of carbon inputs from the freshwater plants was higher. Overall anaerobic metabolism was higher for both soil types incubated at the brackish site where SO₄²⁻ was the dominant TEA. When soils were amended with TEAs in the laboratory, more thermodynamically favorable respiration pathways typically resulted in greater organic matter mineralization (Fe(III) respiration > SO₄²⁻ reduction > methanogenesis). These results suggest that both electron donors and acceptors play important roles in regulating anaerobic microbial mineralization of soil organic matter.     

Gross N transfer rates in field soils measured by 15N-pool dilution

Abstract

A micro-plot ¹⁵N-tracer experiment was established in three different soils of a long-term soil fertility field experiment. The nutrient-poor loam sand has been subjected to various treatments over the years and this has resulted in different organic C (0.35% – 0.86%), microbial biomass (38.3 – 100.0 µg C _mic g^?1 soil), clay and fine silt contents. Using the ¹⁵N-pool dilution technique, we assessed gross N-transfer rates in the field. Gross N mineralization rates varied strongly among the three plots and ranged between 0.4 and 4.2 µg N g^?1 soil d^?1. Gross nitrification rates were estimated to be between 0 and 2.1 µg N g^?1 soil d^?1. No correlation between gross N mineralization rates and the organic matter content of the soils was established. However, gross nitrate consumption rates increased with increasing soil C content. The ¹⁵N-pool dilution technique was successfully used to measure gross N transfer rates directly in the field.     

Drivers of microbial respiration and net N mineralization at the continental scale

The dominant pools of C and N in the terrestrial biosphere are in soils, and understanding what factors control the rates at which these pools cycle is essential in understanding soil CO₂ production and N availability. Many previous studies have examined large scale patterns in decomposition of C and N in plant litter and organic soils, but few have done so in mineral soils, and fewer have looked beyond ecosystem specific, regional, or gradient-specific drivers. In this study, we examined the rates of microbial respiration and net N mineralization in 84 distinct mineral soils in static laboratory incubations. We examined patterns in C and N pool sizes, microbial biomass, and process rates by vegetation type (grassland, shrubland, coniferous forest, and deciduous/broadleaf forest). We also modeled microbial respiration and net N mineralization in relation to soil and site characteristics using structural equation modeling to identify potential process drivers across soils. While we did not explicitly investigate the influence of soil organic matter quality, microbial community composition, or clay mineralogy on microbial process rates in this study, our models allow us to put boundaries on the unique explanatory power these characteristics could potentially provide in predicting respiration and net N mineralization. Mean annual temperature and precipitation, soil C concentration, microbial biomass, and clay content predicted 78% of the variance in microbial respiration, with 61% explained by microbial biomass alone. For net N mineralization, only 33% of the variance was explained, with mean annual precipitation, soil C and N concentration, and clay content as the potential drivers. We suggest that the high R² for respiration suggests that soil organic matter quality, microbial community composition, and clay mineralogy explain at most 22% of the variance in respiration, while they could explain up to 67% of the variance in net N mineralization.     

SOIL MICROBIAL BIOMASS AND NITROGEN MINERALIZATION RATES ALONG AN ALTITUDINAL GRADIENT ON THE COFRE DE PEROTE VOLCANO (MEXICO): THE IMPORTANCE OF LANDSCAPE POSITION AND LAND USE

A study was conducted to examine the responses of microbial activity and nitrogen (N) transformations along an altitudinal gradient. The gradient was divided into three parts. Three areas were sampled: upper part (UP): coniferous forest, corn field, and abandoned corn field; middle part (MP): tropical cloud forest, grassland, and corn field (COL); and lower part (LP): tropical deciduous forest and sugarcane. The results showed that soil microbial biomass carbon (C) and basal respiration were significantly higher in MP and UP than in LP, whereas the microbial quotient (C_mic/C_org) was higher in LP and MP than in UP. The metabolic quotient (qCO₂) was similar among gradient parts evaluated. Net N mineralization, ammonification, and nitrification rates were higher in UP than MP and LP. We found that in UP, the forest conversion to cropland resulted in no significant differences in microbial activity and N transformation rates between land uses. In MP, microbial biomass C, ammonification, and net N mineralization rates decreased significantly with conversion to cropland, but C_mic/C_org and nitrification were higher in COL. Basal respiration and qCO₂ were significantly lower in COL when compared with other land uses. In LP, lower microbial biomass C, C_mic/C_org, and nitrification rates but higher ammonification and net N mineralization rates were observed in tropical deciduous forest than in sugarcane. No significant differences in basal respiration and qCO₂ were found between uses of LP. Clearly, then, soil organic C is not equally accessible to the microbial community along the gradient studied. Copyright © 2012 John Wiley & Sons, Ltd.     

Soil microbial biomass and activity: the effect of site characteristics in humid temperate forest ecosystems

Microbial biomass, respiratory activity, and in‐situ substrate decomposition were studied in soils from humid temperate forest ecosystems in SW Germany. The sites cover a wide range of abiotic soil and climatic properties. Microbial biomass and respiration were related to both soil dry mass in individual horizons and to the soil volume in the top 25 cm. Soil microbial properties covered the following ranges: soil microbial biomass: 20 µg C g^–1–8.3 mg C g^–1 and 14–249 g C m^–2, respectively; microbial C–to–total organic C ratio: 0.1%–3.6%; soil respiration: 109–963 mg CO₂‐C m^–2 h^–1; metabolic quotient (qCO₂): 1.4–14.7 mg C (g C_mic)^–1 h^–1; daily in‐situ substrate decomposition rate: 0.17%–2.3%. The main abiotic properties affecting concentrations of microbial biomass differed between forest‐floor/organic horizons and mineral horizons. Whereas microbial biomass decreased with increasing soil moisture and altitude in the forest‐floor/organic horizons, it increased with increasing N_tot content and pH value in the mineral horizons. Quantities of microbial biomass in forest soils appear to be mainly controlled by the quality of the soil organic matter (SOM), i.e., by its C : N ratio, the quantity of N_tot, the soil pH, and also showed an optimum relationship with increasing soil moisture conditions. The ratio of C_mic to C_org was a good indicator of SOM quality. The quality of the SOM (C : N ratio) and soil pH appear to be crucial for the incorporation of C into microbial tissue. The data and functional relations between microbial and abiotic variables from this study provide the basis for a valuation scheme for the function of soils to serve as a habitat for microorganisms.     

The influence of precipitation pulses on soil respiration - Assessing the “Birch effect” by stable carbon isotopes

Sudden pulse-like events of rapidly increasing CO₂-efflux occur in soils under seasonally dry climates in response to rewetting after drought. These occurrences, termed “Birch effect”, can have a marked influence on the ecosystem carbon balance. Current hypotheses indicate that the “Birch” pulse is caused by rapidly increased respiration and mineralization rates in response to changing moisture conditions but the underlying mechanisms are still unclear. Here, we present data from an experimental field study using straight-forward stable isotope methodology to gather new insights into the processes induced by rewetting of dried soils and evaluate current hypotheses for the “Birch“-CO₂-pulse. Two irrigation experiments were conducted on bare soil, root-free soil and intact vegetation during May and August 2005 in a semi-arid Mediterranean holm oak forest in southern Portugal. We continuously monitored CO₂-fluxes along with their isotopic compositions before, during and after the irrigation. δ¹³C signatures of the first CO₂-efflux burst, occurring immediately after rewetting, fit the hypothesis that the “Birch” pulse is caused by the rapid mineralization of either dead microbial biomass or osmoregulatory substances released by soil microorganisms in response to hypo-osmotic stress in order to avoid cell lyses. The response of soil CO₂-efflux to rewetting was smaller under mild (May) than under severe drought (August) and isotopic compositions indicated a larger contribution of anaplerotic carbon uptake with increasing soil desiccation. Both length and severity of drought periods probably play a key role for the microbial response to the rewetting of soils and thus for ecosystem carbon sequestration.     

Short-term controls over inorganic phosphorus during soil and ecosystem development

Geochemical sorption and biological demand control phosphorus (P) retention and availability in soils. Sorption and the biota predominantly utilize the same inorganic form of P, from the same soil pool, on the same time scale, and thus are likely to compete for P as it flows through the available pool. In tropical soils, P availability is typically quite low and soil geochemical reactivity can be quite high. We tested whether greater P sorption strength in tropical soils resulted in lower biological uptake of available P. Since the strength of soil sorption and biological demand for P change as ecosystems develop and soils age, we used soils from the two upper horizons from three sites along a 4.1 million-year-old tropical forest chronosequence in the Hawaiian archipelago. We evaluated the strength of geochemical sorption, microbial demand, and the partitioning of added available P into biological versus geochemical soil pools over 48 h using a ³²PO₄ tracer. Soil sorption strength was high and correlated with soil mineral content. The amount of added phosphate geochemically sorbed versus immobilized by microbes varied more between the organic and mineral soil horizons than among soil ages. Microbial activity was a good predictor of how much available P was partitioned into biological versus geochemical pools across all soils, while sorption capacity was not. This suggests that microbial demand was the predominant control over partitioning of available P despite changes in soil sorption strength.     

Topographic variation in heterotrophic and autotrophic soil respiration in a tropical seasonal forest in Thailand

Soil respiration is a carbon flux that is indispensable for determining carbon balance despite variations over time and space in forest ecosystems. In Kanchanaburi, western Thailand, we measured the soil respiration rates at different slope positions—ridge (plot R), upper slope (plot U), and lower slope (plot L)—on a hill in a seasonal tropical forest [mixed deciduous forest (MDF)] to determine the seasonal and spatial variations in soil respiration on the slope. The heterotrophic (organic layer and soil) and autotrophic (root) respiration was differentiated by trenching. Soil respiration rates showed clear seasonal patterns: high and low rates in rainy and dry seasons respectively, at all plots, and tended to decrease up the slope. Soil respiration rates responded significantly to soil water content in the 0–30?cm layer, but the response patterns differed between the lower slope (plot L) and the upper slope (plots R and U): a linear model could be applied to the lower slope but exponential quadratic models to the upper slope. The annual carbon dioxide (CO₂) efflux from the forest floor was also associated with the slope position and ranged from 1908?gC?m^?2?year^?1 in plot L to 1199?gC?m^?2?year^?1 in plot R. With ascending position from plot L to R, the contribution of autotrophic respiration increased from 19.4 to 36.6% of total soil respiration, while that of the organic layer decreased from 26.2 to 9.4%. Mineral soil contributed to 46.3 to 54.4% of the total soil respiration. Soil water content was the key factor in controlling the soil respiration rate and the contribution of the respiration sources. However, the variable responses of soil respiration to soil water content create a complex distribution of soil respiration at the watershed scale.     

Carbon mineralization in saline soils as affected by residue composition and water potential

In saline soils under semi-arid climate, low matric and osmotic potential are the main stressors for microbes. But little is known about the impact of water potential (sum of matric and osmotic potential) and substrate composition on microbial activity and biomass in field collected saline soils. Three sandy loam soils with electrical conductivity of the saturated soil extract (EC_e) 3.8, 11 and 21 dS m^?1 (hereafter referred to EC3.8, EC11 and EC21) were kept at optimal water content for 14 days. After this pre-incubation, the soils were either left at optimal water content or dried to achieve water potentials of ?2.33, ?2.82, ?3.04 and ?4.04 MPa. Then, the soils were amended with 20 g?kg^?1 pea or wheat residue to increase nutrient supply. Carbon dioxide emission was measured over 14 days; microbial biomass C was measured at the end of the experiment. Cumulative respiration decreased with decreasing water potential and was significantly (P?<?0.05) lower in soils at water potential ?4 MPa than in soils at optimal water content. The effect of residue type on the response of cumulative respiration was inconsistent; with residue type having no effect in the saline soils (EC11 and EC21) whereas in the non-saline soil (EC3.8), the decrease in respiration with decreasing water potential was less with wheat than with pea residue. At a given water potential, the absolute and relative (in percentage of optimal water content) cumulative respiration was lower in the saline soils than in the non-saline soil. This can be explained by the lower osmotic potential and the smaller microbial biomass in the saline soils. However, even at a similar osmotic potential, cumulative respiration was higher in the non-saline soil. It can be concluded that high salt concentrations in the soil solution strongly reduce microbial activity even if the water content is relatively high. The stronger relative decrease in microbial activity in the saline soils at a given osmotic potential compared to the non-saline soil suggests that the small biomass in saline soils is less able to tolerate low osmotic potential. Hence, drying of soil will have a stronger negative effect on microbial activity in saline than in non-saline soils.     

Substantial net N mineralization during the dormant season in temperate forest soils

In temperate forest soils, N net mineralization has been extensively investigated during the growing season, whereas N cycling during winter was barely addressed. Here, we quantified net ammonification and nitrification during the dormant season by in situ and laboratory incubations in soils of a temperate European beech and a Norway spruce forest. Further, we compared temperature dependency of N net mineralization in in situ field incubations with those from laboratory incubations at controlled temperatures. From November to April, in situ N net mineralization of the organic and upper mineral horizons amounted to 10.9 kg N (ha · 6 months)^–1 in the spruce soil and to 44.3 kg N (ha · 6 months)^–1 in the beech soil, representing 65% (beech) and 26% (spruce) of the annual above ground litterfall. N net mineralization was largest in the Oi/Oe horizon and lowest in the A and EA horizons. Net nitrification in the beech soil [1.5 kg N (ha · 6 months)^–1] was less than in the spruce soil [5.9 kg N (ha · 6 months)^–1]. In the range of soil temperatures observed in the field (0–8°C), the temperature dependency of N net mineralization was generally high for both soils and more pronounced in the laboratory incubations than in the in situ incubations. We suggest that homogenization of laboratory samples increased substrate availability and, thus, enhanced the temperature response of N net mineralization. In temperate forest soils, N net mineralization during the dormant season contributes substantially to the annual N cycling, especially in deciduous sites with large amounts of litterfall immediately before the dormant season. High Q₁₀ values of N net mineralization at low temperatures suggest a huge effect of future increasing winter temperature on the N cycle in temperate forests.     

The rapid oxidation of atmospheric CO to CO2 by soils

Gas exchange rates over soils were measured in a closed, flowing-gas system. ¹⁴CO was rapidly oxidized to ¹⁴CO₂ with only a minor loss in atmospheric radioactivity. Incorporation of ¹⁴C into the soil was slight and was via ¹⁴CO₂ rather than ¹⁴CO. CO oxidation was a microbial process and no oxidation occurred when soils had been autoclaved. The rate of CO depletion was concentration dependent and followed Michaelis-Menten kinetics. The rate constants K_m and V_max ranged from 18 to 51 μ 1^?1 CO and from 0.58 to 4.35 mg C kg^?1 dry soil h^?1 respectively. The maximum rate of reaction for Hubbard Brook soil was about an order of magnitude greater than any soil previously reported. The oxidation reaction was accompanied initially by a reduction in net soil respiration. This was then followed by a period of high respiration which continued until CO levels were reduced to about 5μll^?1. Thereafter respiration fell below the pretreatment rate and only returned to that rate 45 min after CO had been depleted from the atmosphere. The data suggest that at high CO concentrations (40–100 μll^?1CO) autotrophic carboxydobacteria comprise the main component of the CO-oxidizing population and, as the concentration declines towards ambient levels they are replaced by heterotrophic microorganisms possessing a cometabolic process.     

Soil microbial activities in tree-based cropping systems and natural forests of the Central Amazon,Brazil

Little information is available about the factors controlling soil C and N transformations in natural tropical forests and tree-based cropping systems. The aim of this work was to study the effects of single trees on soil microbiological activities from plantations of timber and non-timber species as well as species of primary and secondary forests in the Central Amazon. Soil samples were taken in the primary forest under Oenocarpus bacaba and Eschweilera spp., in secondary regrowth with Vismia spp., under two non-timber tree species ( Bixa orellana L. and Theobroma grandiflorum Willd.), and two species planted for wood production ( Carapa guianensis Aubl. and Ceiba pentandra). In these soils, net N mineralization, net nitrification, denitrification potential, basal and substrate-induced respiration rates were studied under standardized soil moisture and temperature conditions. Individual tree species more strongly affected N transformations, particularly net nitrification, than C respiration. Our results suggest that soil C respiration can be affected by tree species if inorganic N becomes a limiting factor. We found a strong correlation among almost all microbiological processes suggesting close inter-relationship between C and N transformations in the studied soils. Correlation analysis between soil chemical properties and microbiological activities suggest that such strong inter-relationships are likely due to competition between the denitrifying and C-mineralizing communities for NO ₃ ^-, which might be an important N source for the microbial population in the studied soils.     

The fate of catechol in soil as affected by earthworms and clay

The effect of endogeic earthworms (Octolasion tyrtaeum) and the availability of clay (Montmorillonite) on the mobilization and stabilization of uniformly ¹⁴C-labelled catechol mixed into arable and forest soil was investigated in a short- and a long-term microcosm experiment. By using arable and forest soil the effect of earthworms and clay in soils differing in the saturation of the mineral matrix with organic matter was investigated. In the short-term experiment microcosms were destructively sampled when the soil had been transformed into casts. In the long-term experiment earthworm casts produced during 7 days and non-processed soil were incubated for three further months. Production of CO₂ and ¹⁴CO₂ were measured at regular intervals. Accumulation of ¹⁴C in humic fractions (DOM, fulvic acids, humic acids and humin) of the casts and the non-processed soil and incorporation of ¹⁴C into earthworm tissue were determined.Incorporation of ¹⁴C into earthworm tissue was low, with 0.1 and 0.44% recovered in the short- and long-term experiment, respectively, suggesting that endogeic earthworms preferentially assimilate non-phenolic soil carbon. Cumulative production of CO₂-C was significantly increased in casts produced from the arable soil, but lower in casts produced from the forest soil; generally, the production of CO₂-C was higher in forest than in arable soil. Both soils differed in the pattern of ¹⁴CO₂-C production; initially it was higher in the forest soil than in the arable soil, whereas later the opposite was true. Octolasion tyrtaeum did not affect ¹⁴CO₂-C production in the forest soil, but increased it in the arable soil early in the experiment; clay counteracted this effect. Clay and O. tyrtaeum did not affect integration of ¹⁴C into humic fractions of the forest soil. In contrast, in the arable soil O. tyrtaeum increased the amount of ¹⁴C in the labile fractions, whereas clay increased it in the humin fraction.The results indicate that endogeic earthworms increase microbial activity and thus mineralization of phenolic compounds, whereas clay decreases it presumably by binding phenolic compounds to clay particles when passing through the earthworm gut. Endogeic earthworms and clay are only of minor importance for the fate of catechol in soils with high organic matter, clay and microbial biomass concentrations, but in contrast affect the fate of phenolic compounds in low clay soils.