Testing a depth‐based Habitat Classification System against reef fish assemblage patterns in a subtropical marine park

• 1. The Solitary Islands Marine Park (SIMP) in New South Wales (NSW), Australia, has strong cross‐shelf patterns of reef fish assemblages on shallow reefs (<25 m). While the SIMP also contains reef at depths of up to 75 m, marine communities below 25 m are poorly described. The Habitat Classification System (HCS) used for planning the arrangement of zones in this marine park included three depth categories for reef: shallow (<25 m); intermediate (25–60 m); and deep (>60 m). However, these had not been tested to determine if they adequately reflect biotic patterns.
• 2. Using baited remote underwater video (BRUV), fish assemblages were surveyed at 56 sites spread across shallow, intermediate, and deep reefs within the SIMP to examine spatial variation between depth categories. Relationships between assemblage patterns, depth, and four additional factors considered likely to affect assemblage patterns (distance from shore, reef type, dominant benthos, and latitude), were subsequently explored using multivariate statistical methods.
• 3. Reef fish assemblages differed significantly among the depth categories. Assemblage patterns for fish were strongly correlated with depth and moderately correlated with the dominant benthic assemblage. Correlations with the other factors were generally weak. Three distinct assemblages occurred on reefs <25 m, 25–50 m and >50 m. Shallow (<25 m) reefs also displayed strong cross‐shelf patterns, supporting the results from other studies. Weaker cross‐shelf patterns were evident at intermediate depths (25–50 m).
• 4. Depth‐based and cross‐shelf categories are clearly fundamental components for a HCS that will adequately represent reef fish assemblages for conservation planning in the SIMP. Further refining the depth criteria for the intermediate/deep boundary (to 50 m) improves this representation. Further research is required to determine the wider application of the refined HCS to other marine parks in NSW and to determine how well it represents other components of biodiversity. Copyright © 2011 John Wiley & Sons, Ltd.

     

Salinity and geomorphology drive long‐term changes to local and regional fish assemblage attributes in the lower Pecos River,Texas

River systems throughout arid regions worldwide have been heavily impacted by human activities, resulting in long‐term ecological consequences. The lower Pecos River in the Trans‐Pecos region of Texas is no exception, having undergone anthropogenic changes that include decreased flow, elevated salinity, species loss and species invasion. We compared historical and contemporary fish assemblage attributes from the Pecos River at local (site‐specific) and regional (Trans‐Pecos region) scales across a 24‐year time period. Fish assemblage data were collected in October 1987 and 2011, by seining at 15 sites spanning 430 km of the river in Texas. Additionally, we examined contemporary environmental conditions to determine species–environment relationships. We found that fish assemblages were significantly different between time periods, likely due to increased salinisation in the upper half of the study region. Decreased species richness, species replacement and increases in euryhaline species were documented in the upstream sites. Freshwater springs lower the salinity and maintain flows in the downstream reach, allowing for maintenance of the native fish fauna. Careful management of regional aquifers, irrigation practices and petroleum waste water will be necessary for protecting biodiversity and environmental flows in the lower Pecos River.     

Assessing long‐term fish responses and short‐term solutions to flow regulation in a dryland river basin

Water resource development and non‐native species have been cited as primary drivers associated with the decline of native fishes in dryland rivers. To explore this topic, long‐term trends in the fish community composition of the Bill Williams River basin were studied over a 30‐year period (Arizona, USA). We sampled 31 sites throughout the basin that were included in fish surveys by Arizona Game and Fish in 1994–97 and the Bureau of Land Management in 1979–80. We found that non‐native species have proliferated throughout the entire basin, with greater densities in the lower elevations. Native species have persisted throughout most of the major river segments, but have experienced significant declines in frequency of occurrence and abundance in areas also containing high abundances of non‐native species. Next, we assessed the short‐term response of the fish assemblage to an experimental flood event from the system's only dam (i.e. Alamo Dam). In response to the flood, we observed a short‐term reduction in the abundance of non‐native species in sites close to the dam, but the fish assemblage returned to its preflood composition within 8 days of the event, with the exception of small‐bodied fish, which sustained lower postflood densities. Our findings demonstrate the importance of natural flow regime on the balance of native and non‐native species at the basin scale within dryland rivers and highlight minimal effects on non‐native fishes in response to short duration flood releases below dams.     

Dietary soya allergen β‐conglycinin induces intestinal inflammatory reactions,serum‐specific antibody response and growth reduction in a carnivorous fish species,turbot Scophthalmus maximus L.

This study was conducted to investigate the effects of dietary β‐conglycinin on the growth performance, digestion, gut morphology and immune responses of juvenile turbot (Scophthalmus maximus L.). Four diets were formulated to contain 0%, 2%, 4% and 8% purified β‐conglycinin. Triplicate groups of 30 fish were fed to apparent satiation twice daily for 12 weeks. Fish fed 4% and 8% dietary β‐conglycinin showed significantly reduced specific growth rate, feed efficiency ratio, apparent digestibility coefficient of nutrients and whole‐body lipid contents, as well as a profound infiltration of mixed leucocytes in the lamina propria and a significant decrease in the absorptive surface of distal intestine. The expression of pro‐inflammatory cytokines, TNF‐α and IL‐1β, in the distal intestine was significantly upregulated by 4% dietary β‐conglycinin, whereas a significantly lower expression level of IgM and anti‐inflammatory cytokine TGF‐β1 was observed in fish fed 8% dietary β‐conglycinin. Serum lysozyme and alternative complement pathway activity were first significantly enhanced by 2% dietary β‐conglycinin and then rapidly declined by 4% and 8% dietary β‐conglycinin. Respiratory burst activity of head kidney macrophages and serum superoxide dismutase activity were significantly suppressed by 4% and 8% dietary β‐conglycinin. Dietary β‐conglycinin (2–8%) significantly increased the level of specific antibody against β‐conglycinin in serum. Collectively, these results suggested that higher levels of dietary β‐conglycinin (4–8%) induced a variety of non‐specific and specific immune responses and intestinal mucosal lesions in turbot, resulting in inferior feed utilization and poor growth performance.     

Characterization of a γ‐aminobutyrate type A receptor‐associated protein gene,which is involved in the response of Portunus trituberculatus to CO2‐induced ocean acidification

The γ‐aminobutyrate type A receptor‐associated protein (GABARAP) is a ubiquitin‐like modifier implicated in membrane trafficking and fusion events involving the γ‐aminobutyrate type A receptor, autophagy and apoptosis. In this study, the gene encoding GABARAP was cloned from swimming crab Portunus trituberculatus (PtGABARAP) based on the expression sequence tag (EST). The full‐length cDNA of 664 bp includes a 5′ untranslated region (UTR) of 87 bp, a 3′ UTR of 223 bp with a poly(A) tail, and an open reading frame (ORF) of 354 bp encoding a polypeptide of 117 amino acids with a predicted molecular weight of 13.96 kDa. The deduced amino acid sequence shares high similarity (93%–100%) with GABARAPs from other species and includes a conserved Atg8 domain. In a phylogenetic analysis PtGABARAP clustered with GABARAPs from other species, and more widely with other GABARAP family proteins. The impact of elevated ocean acidification (OA) on P. trituberculatus behaviours was investigated, and real‐time RT‐PCR revealed that PtGABARAP expression was up‐regulated after OA exposure. Ocean acidification also caused crabs anxiety‐like behaviours, like the shoal average speed increase, preference for dark environment (scototaxis) and fast exploration. The results indicated that GABARAP might be involved in the interactions of GABA_A receptors and elevated‐CO₂ seawater.