玉米回交后代群体中供体基因组成分分析

以郑58为受体亲本,昌7-2为供体亲本,通过杂交、回交和79对亲本间有多态的SSR标记,分析BC₂F₁和BC₃F₁世代供体的基因组成分。结果表明：BC₂F₁世代单株内的供体染色体片段数平均为11.4个,BC₃F₁世代为4.8个,从BC₂F₁到BC₃F₁单株内的供体染色体片段数减少了57.6%;BC₂F₁世代单株内的供体染色体片段长度平均为99.3 cM,BC₃F₁世代为87.1 cM,BC₃F₁较BC₂F₁减少了12.3%;BC₂F₁世代单株内的供体基因组大小平均为1 132.8 cM,BC3F1世代为421.4 cM,BC₃F₁较BC₂F₁减少了62.8%。     

Current Status of Brown Planthopper (BPH) Resistance and Genetics

Among the planthoppers of rice, the brown planthopper (BPH) is a major threat to rice production and causes significant yield loss annually. Host-plant resistance is an important strategy to reduce the damage caused by BPH and increase rice productivity. Twenty-one major genes for BPH resistance have been identified by using standard evaluation methods developed at the International Rice Research Institute (IRRI) to distinguish resistance or susceptibility of rice genotypes to BPH biotypes/populations. These genes are from diverse genetic resources such as land race cultivars and wild species of Oryza. Of the 21 resistance genes, 18 genes have been localized on specific region of six rice chromosomes using molecular genetic analysis and genomics tools. Some of these resistance genes are clustered together such as Bph1, bph2, Bph9, Bph10, Bph18, and Bph21 on the long arm of chromosome 12; Bph12, Bph15, Bph17 and Bph20 on the short arm of chromosome 4; bph11 and Bph14 on the long arm of chromosome 3 and Bph13(t) and bph19 on the short arm of chromosome 3. Six genes (Bph11, bph11, Bph12, bph12, Bph13 and Bph13) originated from wild Oryza species have either duplicate chromosome locations or wrong nomenclature. The discrepancy should be confirmed by allelism tests. Besides identification of major resistance genes, some quantitative trait loci (QTLs) associated with BPH resistance have also been identified on eight chromosomes. Most of the rice cultivars developed at IRRI possess one or two of the major resistance genes and the variety IR64 has many QTLs and confers strong resistance to BPH. More BPH resistance genes need to be identified from the wealth of gene pool available in the wild species of Oryza. Two BPH resistance genes (Bph14 and Bph18) have been cloned, and a snow drop lectin gene (GNA) has been identified and used in the development of BPH-resistant transgenic plants. Efficient introgression of resistance genes (Bph1, bph2, Bph3, Bph14, Bph15, Bph18, Bph20, and Bph21) into elite rice cultivars by marker-assisted selection together with strategic deployment of these genes can be an important approach to develop stable resistance to BPH and sustain rice production in the tropical and temperate rice growing regions.     

Transgressive variants for red pericarp grain with high yield potential derived from Oryza rufipogon × Oryza sativa: Field evaluation, screening for blast disease, QTL validation and background marker analysis for agronomic traits

Five transgressive variants (advanced breeding lines from BC₂F₅ and BC₂F₆ generation) were derived from a cross between the wild relative, O. rufipogon Griff. and O. sativa L. subsp. indica cv. MR219, a popular high yielding Malaysian rice cultivar. The aim of the study was to evaluate the pericarp colour of the grains along with yield potential and to validate quantitative trait loci (QTLs) for agronomic traits. The variants were screened against blast disease. Background marker analysis was also done for the promising variants. The field trials were carried out at a single location (due to containment purposes) over two seasons using randomized complete block design (RCBD) with three replications. A trait-based marker analysis was used to identify QTLs for validation in BC₂F₅ generation. Analysis of variance (ANOVA) showed that the seasonal factors influenced different agronomic traits. Variant G33 produced significantly (p < 0.05) higher yield (5.20 t/ha) than the control, MR219 (4.53 t/ha). Eighteen QTLs for different agronomic traits were identified in BC₂F₂ population in a previous study. Among them 14 QTLs were found in BC₂F₅ population of the present study. The yield of variant G33 was influenced by several QTLs viz. qGPL-1, qSPL-1-2, qSPL-8 and qYLD-4, which were introgressed from the donor parent revealed by background marker analysis using BC₂F₇ generation. Percentage (99%) of red pericarp grain of G33 and G34 in BC₂F₅ and BC₂F₆ generations indicated the stability of pericarp colour which was transferred from the wild relative. Variant G33 showed resistance against two pathotype of blast disease (Magnaporthe oryzae). Among the evaluated variants, G33 could be considered for inclusion in the cultivar development program for red rice with high yield potential and resistance to blast disease. This study demonstrated that the alleles from wild relative could improve the yield and yield related traits through allelic interaction, even though the phenotypic traits were inferior to the recurrent parent.     

Introgression of Gene for Non-Pollen Type Thermo-Sensitive Genic Male Sterility to Thai Rice Cultivars

For the two-line hybrid rice system, pol en sterility is regulated by recessive gene that responds to temperature. The recessive gene controlling thermo-sensitive genetic male sterility （TGMS） is expressed when the plants are grown in conditions with higher or lower critical temperatures. To transfer tgms gene（s） control ing TGMS to Thai rice cultivars by backcross breeding method, a male sterile line was used as a donor parent while Thai rice cultivars ChaiNat 1, PathumThani 1, and SuphanBuri 1 were used as recurrent parents. The BC2F2 lines were developed from backcrossing and selfing. Moreover, the simple sequence repeat （SSR） markers were developed for identifying tgms gene and the linked marker was used for assisting selection in backcrossing. The identification lines were confirmed by pol en observation. The results showed the success of introgression of the tgms gene into Thai rice cultivars. These lines will be tested for combining ability and used as female parent in hybrid rice production in Thailand.     

分子标记辅助选择下的玉米回交群体农艺性状分析

以综3为受体亲本、衡白522为供体亲本,通过3代回交,利用SSR标记对BC3F1群体背景进行检测,并进行群体植株重要农艺性状的分析。结果表明,群体背景回复率在94.40%以上,平均回复率为97.75%,最高回复率为100%,远远高于经典遗传学背景回复率。农艺性状分析结果显示,背景回复率并未达到分子标记结果。分子标记辅助选择是提高育种选择效果加速育种进程的有效途径之一,针对数量性状控制的农艺性状的选择还需要进一步研究。     

Dissecting Genetic Basis of Deep Rooting in Dongxiang Wild Rice

Deep rooting is an important trait in rice drought resistance. Genetic resources of deep-rooting varieties are valuable in breeding of water-saving and drought-resistant rice. In the present study, 234 BC₂F₇ backcross introgression lines were derived from a cross of Dongye 80 (an accession of Dongxiang wild rice as the donor parent) and R974 (an indica restorer line as the recurrent parent). A genetic linkage map containing 1 977 bin markers was constructed by ddRADSeq for QTL analysis. Thirty-one QTLs for four root traits (the number of deep roots, the number of shallow roots, the total number of deep roots and the ratio of deep roots) were assessed on six rice chromosomes in two environments (2020 Shanghai and 2021 Hainan). Two of the QTLs, qDR5.1 and qTR5.2, were located on chromosome 5 in a 70-kb interval. They were detected in both environments. qDR5.1 explained 13.35% of the phenotypic variance in 2020 Shanghai and 12.01% of the phenotypic variance in 2021 Hainan. qTR5.2 accounted for 10.88% and 10.93% of the phenotypic variance, respectively. One QTL (qRDR2.2) for the ratio of deep roots was detected on chromosome 2 in a 210-kb interval and accounted for 6.72% of the phenotypic variance in 2020. The positive effects of these three QTLs were all from Dongxiang wild rice. Furthermore, nine and four putative candidate genes were identified in qRDR2.2 and qDR5.1/qTR5.2, respectively. These findings added to our knowledge of the genetic control of root traits in rice. In addition, this study will facilitate the future isolation of candidate genes of the deep-rooting trait and the utilization of Dongxiang wild rice in the improvement of rice drought resistance.     

分子标记辅助选择改良水稻恢复系香5的病虫抗性

香5是由湖北省农科院选育的优质两系杂交稻恢复系,所配组合广两优5号(广占63-4S/香5)于2013年通过了湖北省审定.利用回交和分子标记辅助选择技术,将供体亲本MD12086-1351中的抗稻瘟病基因Pi9、抗褐飞虱基因Bph14、Bph15和抗白叶枯病基因Xa23渗入到香5背景中,育成了3个同时携带Pi9、Bph14、Bph15和Xa23基因的新株系.鉴定结果表明,新株系的叶瘟抗性明显提高,穗颈瘟抗性部分提高,苗期抗褐飞虱,分蘖盛期高抗白叶枯病;产量、主要农艺性状、香味和稻米品质主要指标与香5相似.新株系所配的组合在产量、主要农艺性状上与香5所配的组合相似.表明新株系可以作为香5的替代系用于培育抗稻瘟病、抗褐飞虱和抗白叶枯病的两系杂交稻新组合.     

SSR和SNP标记在玉米分子标记辅助背景选择中的应用比较

利用SSR和SNP两种标记对H2321/J076/J076的BC1F1代群体进行分子标记辅助背景选择,比较两种标记在分子标记辅助背景选择上的应用效果。经筛选表明,40对SSR引物中在回交亲本间具有多态性的引物有6对。利用多态性引物对BC1代群体进行毛细管电泳检测结果表明,157个单株轮回亲本背景回复率在50%~100%,背景回复率为100%的单株有1株,背景回复率91.67%的单株有14株。利用Maize SNP3072芯片分析后发现,104个多态性SNP位点可以将157株个体进行精细排序,背景回复率在51.92%~93.75%。比较SSR和SNP标记的背景选择结果,两种标记呈中等程度相关。在回交早代将SSR和SNP标记结合使用进行背景选择,可以实现大群体严选择,提高选择效率。     

Glu A1和 Glu D1位点高分子量谷蛋白亚基共同缺失对弱筋小麦品质的影响

为了研究高分子量谷蛋白亚基(HMWGS)缺失对小麦品质的影响,以 GluA1和 GluD1位点HMWGS共同缺失材料2GS041410作供体亲本,以弱筋小麦品种扬麦13和扬麦18作轮回亲本进行回交,构建不同遗传背景的BC¹F³和BC²F³群体,测定受体、供体亲本的品质,以及回交群体BC¹F³和BC²F³中 GluA1和 GluD1位点HMWGS共同缺失纯合单株及两位点均正常表达纯合单株的品质。结果表明,供体2GS041410具有较低的SDS沉降值、较短的面团形成时间和稳定时间;在BC¹F³和BC²F³中, GluA1和 GluD1位点HMWGS共同缺失对蛋白含量影响不显著,但可显著或极显著降低SDS沉降值和水溶剂保持力(SRC)。 GluA1和 GluD1位点HMWGS双缺失在弱筋小麦品质育种中具有一定的应用价值。     

Biofortification of sweet corn hybrids for provitamin-A,lysine and tryptophan using molecular breeding

Traditional sweet corn is poor in provitamin-A, lysine and tryptophan, deficiency of which causes serious health problems. Here, parental lines of two shrunken2 (sh2) -based sweet corn hybrids viz., ASKH-1 and ASKH-2 were targeted for introgression of crtRB1 and opaque2 (o2) genes through marker-assisted backcross breeding. Gene-based markers; umc1066 (SSR) and 3′TE-InDel were utilized for foreground selection of o2 and crtRB1, respectively in BC₁F₁, BC₂F₁ and BC₂F₂ generations. Background selection employing 102–113 polymorphic SSRs led to >90% recovery of recurrent parent genome. Reconstituted hybrids recorded high mean provitamin-A (18.98 μg/g) with a maximum of 7.7-fold increase over original hybrids (3.12 μg/g). High mean lysine (0.39%) and tryptophan (0.10%) with an average enhancement of 1.71- and 1.79-fold, respectively was recorded among reconstituted hybrids over original versions (lysine: 0.23%, tryptophan: 0.06%). Improved hybrids exhibited high phenotypic resemblance with their original hybrids. The average cob yield (11.82 t/ha) and brix (17.66%) of improved hybrids was at par with their original versions (cob yield: 11.27 t/ha, brix: 17.04%). These biofortified sweet corn hybrids rich in provitamin-A, lysine and tryptophan hold immense significance as multinutrient-rich balanced food. This is the first report to stack sh2, crtRB1 and o2 genes to improve nutritional quality in sweet corn.     

Understanding Brown Planthopper Resistance in Rice: Genetics,Biochemical and Molecular Breeding Approaches

Brown planthopper (BPH, Nilaparvata lugens Stål) is the most devastating pest of rice in Asia and causes significant yield loss annually. Around 37 BPH resistance genes have been identified so far in indica, African rice varieties along with wild germplasms such as Oryza officinalis, O. minuta, O. nivara, O. punctata, O. rufipogon and O. latifolia. Genes/QTLs involved in BPH resistance, including Bph1, bph2/BPH26, Bph3, Bph6, bph7, BPH9, Bph12, Bph14, Bph15, Bph17, BPH18, bph19, Bph20, Bph21(t), Bph27, Bph27(t), Bph28(t), BPH29, QBph3, QBph4, QBph4.2, Bph30, Bph32, Bph33, Bph35 and Bph36, have been fine-mapped by different researchers across the globe. The majority of genes/QTLs are located on rice chromosomes 1, 3, 4, 6, 11 and 12. Rice plants respond to BPH attack by releasing various endogenous metabolites like proteinase inhibitors, callose, secondary metabolites (terpenes, alkaloids, flavonoid, etc.) and volatile compounds. Besides that, hormonal signal pathways mediating (antagonistic/synergistic) resistance responses in rice have been well studied. Marker-assisted breeding and genome editing techniques can also be adopted for improving resistance to novel BPH biotypes.     

Introgression and stabilization oferwinia tuber soft rot resistance into potato after somatic hybridization ofsolanum tuberosum ands. brevidens

Resistance to potato tuber soft rot caused byErwinia carotovora was transferred fromSolanum brevidens to the cultivated potato over the course of four backcross generations originating from a somatic hybrid. Soft rot reactions were determined via a tuber plug inoculation method developed during the course of these experiments. Soft rot resistance was highest in the somatic hybrid (only ca. 20% of tubers and plugs showed evidence of severe rotting) and lowest among progeny of control potato x potato crosses (ca. 80% of tuber plugs showed severe rot). Backcross generations involving somatic hybrids were intermediate in their reaction, and resistance stabilized to about 60% of tuber plugs showing severe rot in the BC₂ through the BC₄. Reciprocal crosses showed no difference in the inheritance of soft rot resistance, indicating that neitherS. brevidens norS. tuberosum donor cytoplasm had a significant effect on the expression of resistance. Crosses between BC₃ siblings where noS. brevidens genetic markers were detected but resistance was segregating demonstrated a dosage effect for soft rot resistance. We conclude that introgression of soft rot resistance has occurred and that at least one locus responsible for resistance inS. brevidens now resides in theS. tuberosum genome.     

玉米矮花叶病抗病基因Rscmv1的精细定位

以感病亲本Mo17为轮回亲本、抗病亲本四一为供体亲本,构建近等基因系,对抗病基因Rscmv1进行精细定位。结果表明,在自交系四一中定位了两个抗病基因Rscmv1和Rscmv2,其中Rscmv1是抗源中普遍存在的主要抗病基因。以选育的近等基因系BC4F3、BC4F4和BC4F5为定位群体,在抗病基因区域内开发了9个有多态性的BAC-SSR标记,将Rscmv1定位在BAC-SSR标记A5-1和B2-1之间,其遗传距离分别为0.3 cM和0.6 cM,2个标记之间的物理距离为1.38 Mb。     

Marker assisted pyramiding of <Emphasis Type="Italic">Bph6</Emphasis> and <Emphasis Type="Italic">Bph9</Emphasis> into elite restorer line 93–11 and development of functional marker for <Emphasis Type="Italic">Bph9</Emphasis>

Background

The brown planthopper (BPH) has become the most destructive and a serious threat to the rice production in Asia. Breeding the resistant varieties with improved host resistance is the most effective and ecosystem-friendly strategy of BPH biological management. As host resistance was always broken down by the presence of the upgrading BPH biotype, the more resistant varieties with novel resistance genes or pyramiding known identified BPH resistance genes would be needed urgently for higher resistant level and more durability of resistance.

Results

Here, we developed near isogenic lines of Bph9 (NIL-Bph9) by backcrossing elite cultivar 93–11 with Pokkali (harboring Bph9) using marker-assisted selection (MAS). Subsequently, we pyramided Bph6 and Bph9 in 93–11 genetic background through MAS. The resulting Bph6 and Bph9 pyramided line LuoYang69 had stronger antixenotic and antibiosis effects on BPH and exhibited significantly enhanced resistance to BPH than near isogenic lines NIL-Bph6 and NIL-Bph9. LuoYang69 derived hybrids, harboring heterozygous Bph6 and Bph9 genes, also conferred high level of resistance to BPH. Furthermore, LuoYang69 did not affect the elite agronomic traits and rice grain quality of 93–11. The current study also developed functional markers for Bph9. Using functional dominant marker, we screened and evaluated worldwide accessions of rice germplasm. Of the 673 varieties tested, 8 cultivars were identified to harbor functional Bph9 gene.

Conclusion

The development of Bph6 and Bph9 pyramided line LuoYang69 provides valuable resource to develop hybrid rice with highly and durable BPH resistance. The development of functional markers will promote MAS of Bph9. The identified Bph9 containing cultivars can be used as new sources for BPH resistance breeding programs.

     

Identification and fine mapping of <Emphasis Type="Italic">Bph33</Emphasis>, a new brown planthopper resistance gene in rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.)

Background

Host-plant resistance is the most desirable and economic way to overcome BPH damage to rice. As single-gene resistance is easily lost due to the evolution of new BPH biotypes, it is urgent to explore and identify new BPH resistance genes.

Results

In this study, using F_2:3 populations and near-isogenic lines (NILs) derived from crosses between two BPH-resistant Sri Lankan rice cultivars (KOLAYAL and POLIYAL) and a BPH-susceptible cultivar 9311, a new resistance gene Bph33 was fine mapped to a 60-kb region ranging 0.91–0.97 Mb on the short arm of chromosome 4 (4S), which was at least 4 Mb distant from those genes/QTLs (Bph12, Bph15, Bph3, Bph20, QBph4 and QBph4.2) reported before. Seven genes were predicted in this region. Based on sequence and expression analyses, a Leucine Rich Repeat (LRR) family gene (LOC_Os04g02520) was identified as the most possible candidate of Bph33. The gene exhibited continuous and stable resistance from seedling stage to tillering stage, showing both antixenosis and antibiosis effects on BPH.

Conclusion

The results of this study will facilitate map-based cloning and marker-assisted selection of the gene.

     

玉米不育系回交转育群体背景选择效果的研究

以玉米细胞质不育系cms-合344为供体亲本、辐63018为轮回亲本,构建BC_1和BC_2群体,研究利用SSR标记进行遗传背景选择加速回交转育不育系的效果。选用两亲本间多态性好的并覆盖玉米10条染色体的60个SSR标记进行轮回亲本的遗传背景分析。结果表明,对两群体遗传背景回复率分析,86株BC_1群体背景回复率平均值为74.41%,63株BC_2群体背景回复率平均值为87.36%,BC_1群体表型与分子标记辅助选择相似度均较高的株系有9株,BC_2有8株。对两群体进行不同标记数目分析,两群体中使用40个标记与总数60个标记所计算的背景回复率基本相同,相关系数分别达到0.96和0.95以上。     

Improving Rice Blast Resistance by Mining Broad-Spectrum Resistance Genes at Pik Locus

Magnaporthe oryzae is known for its genetic diversity and pathogenic variability, leading to rapid breakdown of resistance in rice. Incorporating multiple broad-spectrum blast resistance genes into rice cultivars would extend disease resistance longevity. Effective resistance breeding in rice therefore requires continual enrichment of the reservoir of resistance genes and alleles. We conducted a large-scale screen of rice blast resistance in about 2 000 rice accessions. Among them, 247 accessions showed at least medium resistance to the natural infection of rice blast and 7 novel Pik alleles were identified from them. Variations in gene sequences were then correlated with the phenotypic trait to enable the identification of favorable alleles. Among the seven novel Pik alleles, the resistant rate of Pik-R0/ME/7017 donors was greater than 80%, and the disease score was less than 3. Through molecular marker-assisted backcross breeding, we successfully transferred the three Pik alleles, Pik-R0/ME/7017, into an elite cultivated line Kongyu 131 to obtain BC₃F₂ lines, which showed enhanced resistance to rice blast compared with the recurrent parent. Assessment of these near-isogenic lines in the greenhouse using 31 isolates of M. oryzae from Heilongjiang Province of China revealed that the resistant levels of the BC₃F₂ lines with Pik-R0/ME/7017 were significantly higher than those of the established cloned resistance genes Pik-m and Pi1. Exploring such alleles will enrich our gene library for resistance to rice blast.     

Insect-mediated cross-pollination in soybean [Glycine max (L.) Merrill] : I. Agronomic performance

In soybean, manual cross-pollination to produce large quantities of F₁ hybrid seed for yield trials is difficult and time-consuming. Conversely, insect-mediated cross-pollination has been shown to produce large quantities of hybrid seed in soybean and could facilitate the identification of heterotic patterns. The objective of our study was: (1) evaluate F₁ hybrid soybean plants from single crosses for yield and agronomic traits over several environments and (2) compare hybrid performance of the single crosses to lines developed from three-way crosses and backcrosses. In 2003, F₁ seed of single-crosses and their parent lines were evaluated in replicated experiments at three locations. Also in 2003, three-way crosses, and BC₁F₁ seed were produced. In 2004, three-way crosses, BC₁F₁ crosses, and their parent lines were evaluated at one location. High-parent heterosis (HPH) in single-crosses for grain yield ranged from −41.11% to +11.19%; for protein content from −4.34% to +3.53%, and for oil content from −13.22% to −0.84%. In three-way crosses, HPH for yield ranged from −25.21% to −4.50%, for protein from −2.72% to +1.92%, and for oil from −5.87% to −1.20%. For BC₁F₁ crosses, HPH for yield ranged from −15.65% to +41.97%, for protein from −2.57% to +1.69%, and for oil from −2.47% to +2.22%. Although positive heterosis levels were observed across all populations tested to determine the economic feasibility it is imperative that more tests of more cross-combinations be evaluated in replicated environments. Extensive research in different environments must be conducted to determine what parental combinations will produce the highest heterosis levels, and to develop criteria for selecting the parents with the best combining ability. This will be important to maximize agronomic performance that can economically justify the use of hybrids in soybean production.     

聚合白背飞虱和褐飞虱抗性基因创制杂交水稻恢复系

【目的】为了创制兼抗白背飞虱和褐飞虱的水稻恢复系，【方法】分别以抗褐飞虱材料B5（携带褐飞虱抗性基因Bph14和Bph15）及携带白背飞虱抗性位点qsI-4的籼型恢复系福恢7011为供体亲本，以骨干恢复系福恢676为轮回亲本，应用低世代分离群体田间表型结合单株鉴定与高世代稳定株系室内筛选和分子标记辅助选择相结合的方法，并对抗虫株系及其测交后代进行考查和农艺性状分析。【结果】选育出聚合Bph14、Bph15 和qsI-4的恢复系材料3份，携带2个抗虫基因的恢复系材料3份。其中6份恢复系的褐飞虱抗性鉴定结果均表现中抗以上。通过抗性鉴定和杂交后代农艺性状分析筛选出具有生产应用潜力的恢复系材料2份。【结论】为褐飞虱和白背飞虱抗性聚合新种质的创制和应用提供了基础材料。     

RFLP and SSR mapping of a new gene for brown planthopper resistance introgressed from O. Eichingeri into cultivated rice(O. Sativa L.)

Nine brown planthopper(BPH) resistance genes have been registered so far, but of them only Bph1, bph2, Bph3, bph4, Bph9,and other three unregistered genes Bph10(t), Bph(t), bph(t) were located on chromosome 3, 4, 10, and 12, respectively, by using traditional and molecular mapping methods. To use the genes for BPH resistance in rice breeding and production, interspecific hybrids between cultivated rice and accessions of O. eichingeri (2n=24, CC), a wild rice species from Africa, with strong resistance to BPH and whitebacked planthopper were produced.