Starch granules size distribution in superior and inferior grains of wheat is related to enzyme activities and their gene expressions during grain filling

Mature wheat endosperm contains A-, B-, C-type starch granules, and each class has unique physiochemical properties which determine the quality of starch. The dynamics of the starch granule size distribution, activities of starch synthases and expression of starch synthase encoding genes were studied in superior and inferior grains during grain filling. Compared with inferior grains, superior grains showed higher grain weight, contents of starch, amylose and amylopectin. The formation of A-, B-, C-type starch granules initiated at 4, 8, 20 DAF, respectively, and was well consistent with the temporally change patterns of starch synthase activities and relative gene expression levels. For instance, activities of soluble and granule-bound starch synthases (designated SSS and GBSS) peaked at 20 and 24 DAF. Genes encoding isoforms of starch synthases expressed at different grain filling periods. In addition, SS I was generally expressed over the grain filling stage; the SS II and SS III were expressed over the early and mid grain filling stage, and the GBSS I was expressed during the mid to late grain filling stage. In addition, the time-course changes in activities of starch synthases and expression of starch synthase encoding genes explained well the dynamics of the starch granule size distribution.     

Cloning and expression analysis of kenaf (Hibiscus cannabinus L.) major lignin and cellulose biosynthesis gene sequences and polymer quantification during plant development

In order to apply state-of-the-art molecular breeding techniques in fibre crop it is necessary to have a good knowledge of major polymer biosynthesis gene sequences and their expression pattern. Polymerase chain reaction was employed to isolate sequences of the major genes for lignin and cellulose biosynthesis in a kenaf cultivar. CeSA, 4cl, c4h, cad, and ccr gene primers were designed according to their conservative regions; partial sequences of lignin and cellulose biosynthesis genes were obtained. One actin II gene sequence was also isolated from the kenaf genome as a housekeeping gene to be employed in qPCR analysis. Expression levels of genes c4h, cad and CeSA in bark and core from plants harvested at three different growth stages were evaluated. Using qPCR analyses it was found that the expression levels of the two biosynthesis lignin genes in bark tissues increased during plant growth, while a negative trend was recorded in core tissues. In both bark and core, the quantity of lignin was positively correlated to plant growth while cellulose content decreased.     

A comparative view of grain development in Brachypodium distachyon

Cereal grains are both at the forefront of agriculture as a food source and in basic botanical terms are unique fruit forms. Analyses and characterisation of their development and composition are therefore invaluable in both applied and basic biological research. A key approach in driving forward this research is a comparative one and this approach is facilitated when there are sequence, gene expression and functional resources available for a variety of species. In this article we review and assess the current status of resources for Brachypodium distachyon as a model system and we then focus specifically on recent studies characterising and comparing grain development, organisation and composition in this species.     

灌浆期高温与干旱对小麦籽粒淀粉合成相关酶基因表达的影响

灌浆期高温与干旱是影响小麦籽粒淀粉合成与积累的重要因素。为探讨灌浆期高温、干旱及其复合胁迫对小麦籽粒淀粉合成及积累的影响机理,以郑麦366为试验材料,采用大田盆栽和人工气候室模拟高温相结合的方法,研究了灌浆期高温、干旱及其复合胁迫对小麦籽粒淀粉合成相关酶基因表达特性及淀粉含量的影响。结果表明,灌浆期高温导致小麦籽粒淀粉合成相关酶基因表达高峰期提前,并不同程度抑制淀粉合成相关酶基因的表达;干旱胁迫不同程度提高了 AGPL1、 AGP1-a、 AGP1-b、GBSSI、SSI、SSIIc、SSIIIb、BEI、BEIIb、 ISA2、PHOH基因的表达量,降低其余被测基因表达量;高温和干旱复合胁迫与单因素胁迫对被测指标的影响不尽相同,表明两者对某些指标存在互作效应。高温与干旱均导致成熟期籽粒直链、支链和总淀粉含量下降。淀粉合成相关酶基因表达特性与淀粉积累密切相关。综上所述,高温与干旱改变了淀粉合成相关酶基因的表达,使淀粉积累受抑,导致小麦籽粒淀粉含量和产量下降。     

Molecular cloning and expression analysis of the Rf-m candidate genes encoding pentatricopeptide repeat proteins in soybean

Cytoplasmic male sterility (CMS)-restorer system is a useful tool to exploit heterosis in soybean. The major restorer gene for the M-type CMS is known as Rf-m, located in the 162.4-kb region on chromosome 16. Sequence analysis has revealed that the Rf-m locus in Glycine max consists of seven pentatricopeptide repeat (GmPPR) genes. The deduced amino acid sequences contain 8 to 14 PPR motifs, and a phylogenetic analysis grouped these GmPPR proteins into two PPR subfamilies: Glyma.16G161800 belongs to the PLS subfamily, and the P subfamily consists of Glyma.16G161900, Glyma.16G162000, Glyma.16G162100, Glyma.16G162700, Glyma.16G162800, and Glyma.16G163100. The phylogenetic analysis of seven GmPPR proteins and 27 other plant PPR proteins also showed that proteins in the same subfamilies cluster together. Comparative sequence analysis was conducted using the seven Rf-m candidate GmPPR genes from the sterile line W931A, the maintainer line W931B, and the restorer line WR016, the result showed that Glyma.16G161900 had higher polymorphism than the other candidate genes. Based on real-time quantitative RT-PCR data, all seven GmPPR genes were differentially expressed but showed constitutive expression in roots, stems, leaves, and pollen grains. Additionally, the expression level of Glyma.16G161900 in the sterile line W931A was significantly higher in all tissues than in the restorer line WR016. Taken together, these results suggest that Glyma.16G161900 is the most likely candidate for the restorer gene Rf-m. This study is the first report and analysis of candidate fertility restorer (Rf) genes encoding PPR proteins in soybean.     

Molecular cloning and expression analysis of the main gliadin-degrading cysteine endopeptidase EP8 from triticale

During the development and maturation of cereal grains, storage proteins are accumulated in the starchy endosperm. The enzymes responsible for the mobilisation of stored proteins during seed germination are cysteine endopeptidases and serine carboxypeptidases. In our previous study, we purified the major gliadin-degrading cysteine, endopeptidase EP8, from germinating triticale kernels. We confirmed in an experiment with exogenous gibberellic acid (GA₃) that this enzyme is synthesised in aleurone during germination. In this study, the nucleotide sequence of EP8, a barley EP-A (HvEPA) homologue, and the expression pattern during grain development and germination have been analysed. Additionally, by comparing the activity of purified EP8 with the activity pattern of crude enzymatic extracts, the lack of enzyme activity in some tissues and during certain developmental stages has been demonstrated. The correlation of the results of the EP8 expression analysis with the activity pattern of this endopeptidase allowed us to formulate a hypothesis regarding the mechanism of EP8 activity regulation. We believe that the absence of active EP8 until the third day of germination may be associated with high levels of endogenous cystatin TrcC-4, which has the ability to inhibit EP8 in vitro.     

Quality characteristics and field performance of selectable marker-free transgenic rice with antisense Wx gene and improved quality derived from the elite parents of hybrid indica rice

In rice grains, high amylose content (AC) is correlated with poor grain quality, particularly in indica hybrid rice. To obtain indica hybrid rice with improved cooking and eating qualities, we introduced the antisense Waxy (Wx) gene into 2 elite parental lines of indica hybrid rice by using co-transformation methods. Subsequently, we selected several elite homozygous transgenic lines that did not contain the selectable marker. The expression of the endogenous Wx gene of the selected transgenic lines was significantly downregulated, resulting in low AC in the mature seeds; moreover, the AC in some lines reduced to the level observed in glutinous rice. With the decrease in AC, the gel consistency of the transgenic rice became softer, and the gelatinization temperature tended to be higher than those of the wild types, especially in the case of the Longtefu-derived transformants. We also analyzed the pasting properties of the selected transgenic low-AC lines, and we noted an improvement in the pasting properties of the transgenic rice lines. The results from a field trial indicated that the grain weights of the transgenic lines with lower AC exhibit remarkable reduction compared with those of the wild types.     

苋菜MDH基因克隆及生物信息学分析

[目的]对苋菜MDH基因进行克隆及生物信息学分析.[方法]以苋菜试管苗为材料,从实验室构建的苋菜转录组数据库中筛选出苋菜MDH基因的cDNA序列片段,采用RT-PCR技术对其ORF进行克隆,并进行生物信息学分析.[结果]MDH基因编码344个氨基酸,通过生物信息学分析表明,MDH可能为非分泌蛋白,包括33个磷酸化位点,...     

Effects of Different Nitrogen Application Rates on Starch Accumulation,Starch Synthase Gene Expression and Enzyme Activity in Two Distinctive Potato Cultivars

Nitrogen (N) is the most important nutrient for potato growth. N fertilizer has an important effect on the tuber yield and starch content in potatoes. In this study, taking the high-starch cultivar Kexin 22 and the low-starch cultivar Kexin 19 as experimental materials, three N fertilizer application rates—0, 150 and 300 kg/ha—were used to investigate the effects of different N application rates on starch accumulation and the expression of starch synthase genes in potato tubers with different starch contents. In the cultivar Kexin 22, the accumulations of amylose, amylopectin and total starch showed a ranking of N150 > N300 > N0 for the entire growth period. The cultivar Kexin 19 showed an accumulation pattern of N0 > N150 > N300 in the early growth period, N150 > N300 > N0 in the middle growth period and N300 > N150 > N0 in the late growth period. Compared with those in Kexin 19, the expressions of the glucose-1-phosphate adenyltransferase (AGPP-L), granule-bound starch synthase (GBSSI), starch-branching enzyme I (SBEI) and soluble starch synthase III (SSIII) genes in Kexin 22 were upregulated, whereas no obvious difference existed in the expression of the alkylglycerone phosphate synthase (AGPP-S) and soluble starch synthase II (SSII) genes between the two cultivars. In Kexin 22, the different N application rates had a significant effect on the peak expression levels of AGPP-L, GBSSI, SBEI and SSIII but had a small effect on the peak expression time for these genes. Among these genes, most showed a ranking of N150 > N300 > N0 in the early and middle growth periods, and all showed a ranking of N300 > N150 > N0 in the late growth period; most showed a peak expression time on the 65th day after emergence (DAE 65). In Kexin 19, the different N application rates had a significant effect on the peak expression levels and peak expression times of the AGPP-L, GBSSI, SBEI and SSIII genes. Among these genes, all showed a ranking of N0 > N150 > N300 in the early growth period, whereas most showed a ranking of N150 > N300 > N0 in the middle growth period, and all showed a ranking of N300 > N150 > N0 in the late growth period. In Kexin 19, the peak gene expression was shifted to an earlier date under the low N levels, and it was delayed under the high N levels. The effects of the N application rate on the activities of starch synthases AGPP, GBSS, SSS and SBE showed largely the same trends as those in the expression levels of the related genes. Therefore, to obtain a high harvest of starch yield, different N application rates should be recommended for different cultivars.     

Characterization of 12 Novel Microsatellite Markers of Sogatella furcifera (Hemiptera: Delphacidae) Identified From Next-Generation Sequence Data

The white-backed planthopper, Sogatella furcifera (Horváth) (Hemiptera: Delphacidae), is a major pest of rice and has long-range migratory behavior in Asia. Microsatellite markers (simple sequence repeats) have been widely used to determine the origins and genetic diversity of insect pests. We identified novel microsatellite loci for S. furcifera samples collected from Laos, Vietnam, and three localities in Bangladesh from next-generation Roche 454 pyrosequencing data. Size polymorphism at 12 microsatellite loci was verified for 40 adult individuals collected from Shinan, South Korea. The average number of alleles per locus was 7.92. The mean values of observed (H_o) and expected heterozygosities (H_E) were 0.615 and 0.757, respectively. These new microsatellite markers will be a resource for future ecological genetic studies of S. furcifera samples across more broad geographic regions in Asia and may assist in estimations of genetic differentiation and gene flow among populations for implementation of more effective management strategies to control this serious rice pest.     

Characterization of Amaranthus cruentus L. seed proteins by 2-DE and LC/MS–MS: Identification and cloning of a novel late embryogenesis-abundant protein

Amaranth is taking great attention as an important cereal crop that could fulfill food requirements for the growing population, especially in developing countries. However, the protein composition of these seeds is not well known yet. We have used the proteomics tools to characterize amaranth seed proteome. About 400 proteins spots were resolved on two-dimensional gel electrophoresis (2-DE) and protein spots were analyzed by LC-MS/MS (liquid chromatography tandem mass spectrometry). Identified proteins were related to stress and defense responses, metabolic, respiratory, and oxide-reduction processes. One abundant spot was identified as a Late Embryogenesis Abundant (LEA) protein and the gene was cloned and characterized. The AcLEA cDNA contains a 418 bp open reading frame (ORF) encoding a polypeptide of 139 amino acids. Bioinformatics analysis showed that AcLEA belongs to LEAs Group 5. Proteomics is a powerful technique that could be used even in non-sequenced organisms such as amaranth. The obtained information reveals that amaranth seed, beyond the classical seed storage proteins, contains proteins related to protection against stress. The identification of these proteins opens the door to the application of new strategies to improve the quality of amaranth production.     

Nitric Oxide Synthase in the Central Nervous System and Peripheral Organs of Stramonita haemastoma: Protein Distribution and Gene Expression in Response to Thermal Stress

Nitric oxide (NO) is generated via the oxidation of l-arginine by the enzyme NO synthase (NOS) both in vertebrates and invertebrates. Three NOS isoforms, nNOS, iNOS and eNOS, are known in vertebrates, whereas a single NOS isoform is usually expressed in invertebrates, sharing structural and functional characteristics with nNOS or iNOS depending on the species. The present paper is focused on the constitutive Ca²⁺/calmodulin-dependent nNOS recently sequenced by our group in the neogastropod Stramonita haemastoma (ShNOS). In this paper we provide new data on cellular distribution of ShNOS in the CNS (pedal ganglion) and peripheral organs (osphradium, tentacle, eye and foot) obtained by WB, IF, CM and NADPHd. Results demonstrated that NOS-like proteins are widely expressed in sensory receptor elements, neurons and epithelial cells. The detailed study of NOS distribution in peripheral and central neurons suggested that NOS is both intracellular and presynaptically located. Present findings confirm that NO may have a key role in the central neuronal circuits of gastropods and in sensory perception. The physiological relevance of NOS enzymes in the same organs was suggested by thermal stress experiments demonstrating that the constitutive expression of ShNOS is modulated in a time- and organ-dependent manner in response to environmental stressors.     

Overexpression of the Barley Nicotianamine Synthase Gene HvNAS1 Increases Iron and Zinc Concentrations in Rice Grains

In humans, iron (Fe) and zinc (Zn) deficiencies result in major worldwide health problems. Transgenic technologies to produce Fe- and Zn-biofortified rice varieties offer a promising potential solution. Nicotianamine, the precursor of phytosiderophores, chelates Fe²⁺ and Zn²⁺ and plays an important role in transporting these metals to both vegetative and reproductive organs within the plant. Our objective was to increase Fe and Zn contents in rice grains by overexpressing the barley nicotianamine synthase gene HvNAS1. HvNAS1-overexpressing transgenic rice showed increased HvNAS1 expression and subsequent increases in endogenous nicotianamine and phytosiderophore content in shoots, roots, and seeds. Fe and Zn concentrations in polished T₁ seeds from transgenic plants increased more than three and twofold, respectively; Fe and Zn concentrations also increased in both polished and brown T₂ seeds. These results suggest that the overproduction of nicotianamine enhances the translocation of Fe and Zn into rice grains.     

Effects of additives on the rheological and mechanical properties of non-conventional fresh handmade tagliatelle

The effects of the following additives on the amaranth (A), quinoa (Q) and oat (O) dough rheological properties and the extruded tagliatelle dough mechanical characteristics were evaluated: carboxymethylcellulose of sodium (CMC), whey protein isolate (WPI), casein (CAS), chitosan (CHIT) and pregelatinized starch (PS). The amaranth, quinoa and oat rheological dough properties and amaranth, quinoa and oat tagliatelle mechanical characteristics were compared to those of their respective controls (ACTRL, QCTRL and OCTRL) and of the SEMOLINA sample. The storage modulus (G′) and loss modulus (G″) values of the quinoa and oat doughs with PS were similar to those of the semolina dough. For all tagliatelle samples, WPI reduced the elastic modulus or Young's modulus towards that of the semolina tagliatelle. Moreover, the additives did not have particular influence on the tenacity with the exception of the amaranth tagliatelle added with WPI.     

水稻异淀粉酶基因ISA1及其启动子的表达特性分析

 利用实时定量RT-PCR方法研究了水稻异淀粉酶基因ISA1在各组织及不同发育阶段籽粒中的表达模式,结果表明该基因只在发育籽粒中表达。同时,克隆了ISA1基因起始密码子上游1.1 kb和2.1 kb两个不同长度的启动子片段,并分别与GUS报告基因融合,经农杆菌介导转入水稻中。对转基因水稻植株中GUS活性的定性与定量结果表明,2.1 kb的ISA1启动子具有很好的胚乳表达特异性,与内源基因定量表达分析的结果一致;而1.1 kb的ISA1启动子则不具备该表达特性,它在胚乳、茎、茎节及谷壳中都有很高的表达。这可能是因为 2.1 kb启动子中含有抑制目的基因在茎等组织或器官中表达的顺式作用元件。