Microbial biomass in paleosols under burial mounds as related to changes in climatic conditions in the desert-steppe zone

The contents of carbon in the total microbial biomass (C-TMB) and in the microorganisms reactivated with glucose (C-RG) and the portion of glucose-reactivated microorganisms in the microbial community (C-RG/C-TMB) were determined in paleosols buried under desert-steppe kurgans (burial mounds) 5100–3960 years ago and in the background surface light chestnut soils. In the paleosols, the corresponding indices reached 986 μg/g (C-TMB), 14.6 μg/g (C-RG), and 1.5% (C-RG/C-TMB) and were considerably lower than those in the background surface soil. The lowest values were found for the paleosols buried 4260–3960 years ago, which confirms a conclusion about the paleoecological crisis during this time interval.     

Age and activation of microbial communities in soils under burial mounds and in recent surface soils of steppe zone

Chestnut paleosols buried under steppe kurgans about 4800, 4000, and 2000 years ago and their background analogues were studied in the dry steppe zone on the Volga-Don interfluve. Morphological, chemical, microbiological, biochemical, and radiocarbon studies were performed. Paleoclimatic conditions in the region were reconstructed on the basis of paleosol data. The ages of microbial fractions isolated from the buried and surface soils were determined using the method of ¹⁴C atomic mass-spectrometry. It reached 2100 years in the A1 horizon of the buried paleosol, which corresponded to the archaeological age of the kurgan (1st century AD). The ages of microbial biomass isolated from the B2 horizons of the buried paleosol and the background surface soil comprised 3680 ± 35 and 3300 ± 30 years, respectively. The obtained data confirmed our assumption about preservation of microorganisms of the past epochs in the paleosols buried under archaeological monuments. It is ensured by various mechanisms of adaptation of soil microbial communities to unfavorable environmental conditions (anabiosis, transformation of bacteria into nanoforms, etc.). The possibility to stimulate germination of the ancient dormant microbial pool isolated from the buried paleosols by 2–3 orders of magnitude with the use of β-indolyl-3-acetic acid as a signal substance was demonstrated.     

Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA

We studied the distribution of the indigenous bacterial and fungal communities in a forest soil profile. The composition of bacterial and fungal communities was assessed by denaturing gradient gel electrophoresis (DGGE) of total and extracellular DNA extracted from all the soil horizons. Microbial biomass C and basal respiration were also measured to assess changes in both microbial biomass and activity throughout the soil profile. The 16S rDNA-DGGE revealed composite banding patterns reflecting the high bacterial diversity as expected for a forest soil, whereas 18S rDNA-DGGE analysis showed a certain stability and a lower diversity in the fungal communities. The banding patterns of the different horizons reflected changes in the microbial community structure with increasing depth. In particular, the DGGE analysis evidenced complex banding patterns for the upper A1 and A2 horizons, and a less diverse microflora in the deeper horizons. The low diversity and the presence of specific microbial communities in the B horizons, and in particular in the deeper ones, can be attributed to the selective environment represented by this portion of the soil profile. The eubacterial profiles obtained from the extracellular DNA revealed the presence of some bands not present in the total DNA patterns. This could be interpreted as the remainders of bacteria not any more present in the soil because of changes of edaphic conditions and consequent shifting in the microbial composition. These characteristic bands, present in all the horizons with the exception of the A1, should support the concept that the extracellular DNA is able to persist within the soil. Furthermore, the comparison between the total and extracellular 16S rDNA-DGGE profiles suggested a downwards movement of the extracellular DNA.     

Specific features of paleosols of burial mounds involved in current farming practices and their contemporary pedogenesis (using the early Alanian burial mounds in the North Caucasus region as an example)

Paleosols of three burial sites—Brut 1, Brut 2, and Beslan—in the Northern Osetia Republic (Alania) of the North Caucasus region were studied. A part of the Brut 2 burial site was subjected to intensive agricultural use (more than 30-year-long irrigation and regular tillage). This led to the leveling of the burial mounds and changes in some properties of the buried paleosols. A comparative analysis of paleosols of the same age under the burial mounds involved not included in the intensive agricultural use made it possible to determine the degree of preservation of the initial properties in the irrigated paleosols and to use them for reconstruction of the paleoclimates. Some specific features of the soil evolution were revealed, and paleoclimate reconstructions were performed for the period of the Early Alan civilization in the North Caucasus region (from the second half of the 2nd century AD to the middle of the 5th century AD).     

Comparative characterization of microbial communities in kurgans,paleosols buried under them,and background surface soils in the steppe zone of the Lower Volga region

A comparative analysis of the state of microbial communities in kurgans, paleosols buried under them, and background surface soils in the dry steppe zone of the Lower Volga region has been performed. It is shown that the population density of microorganisms of various trophic groups in the kurgans is an order of magnitude lower than that in the A1 horizon of the corresponding buried paleosols and background surface soils within the areas of chestnut, light chestnut, and solonetzic soils. The respiration activity of the microbial communities in the upper layer of the kurgans is comparable with that in the A1 horizons of the background surface soils; it decreases in the deeper layers of the kurgans. In the A1 horizon of the buried paleosols, the respiration activity is approximately the same as in the deep layers of the kurgans. In the buried paleosols, the spatial variability in the numbers of soil microorganisms is approximately the same or somewhat higher than that in the background surface soils. The spatial variability in the respiration activity of the buried paleosols is two to four times higher than that in the background surface soils.     

Changes in the structure of soil microbial biomass under fallow

The number and biomass of various groups of microorganisms in fallow soils is greater as compared to plowed soils. The microbial biomass in all fallow and plowed soils is dominated by fungal mycelium (from 90% in the top horizons to 97% in the lower ones). The part of spores in the fungal biomass is higher in plowed soils (from 9% in the top horizons to 4% in the lower ones) as compared to fallow soils (3.5?C6%). The fallow soils are characterized by the greater part of prokaryotic microorganisms in the biomass, and the reserves and structure of the microbial biomass are more similar to those in the undisturbed soils. These characteristics changed during a ten-year-long period in a soddy-calcareous soil and during a 25-year-long period in a leached chernozem.     

Cattle grazing increases microbial biomass and alters soil nematode communities in subtropical pastures

This study focused on examining the impacts of cattle grazing on belowground communities and soil processes in humid grasslands. Multiple components in the soil communities were examined in heavily grazed and ungrazed areas of unimproved and improved bahiagrass (Paspalum notatum Flugge) pastures in south-central Florida. By using small (1-m×1-m) sampling plots, we were able to detect critical differences in nematode communities, microbial biomass, and mineralized C and N, resulting from the patchy grazing pattern of cattle. Soil samples were collected on three occasions between June 2002 and June 2003. Microbial C and N were greater (P?0.01) in grazed than in ungrazed plots on all sampling dates. Effects of grazing varied among nematode genera. Most genera of colonizer bacterivores were decreased (P?0.10) by grazing, but more persistent bacterivores such as Euteratocephalus and Prismatolaimus were increased, as were omnivores and predators. Higher numbers of persisters indicated that grazing resulted in a more structured nematode community. Some herbivores, particularly Criconematidae, were decreased by grazing. Abundance of omnivores, predators, and especially fungivores were strongly associated with C mineralization potential. Strong correlation of microbial C and N with nematode canonical variables composed of five trophic groups illustrates important links between nematode community structure and soil microbial resources. Including the analysis of nematode trophic groups with soil microbial responses reveals detection of grazing impact deeper into the hierarchy of the decomposition process in soil, and illustrates the complexity of responses to grazing in the soil foodweb. Although highly sensitive to grazing impacts, small-scale sampling could not be used to generalize the overall impact of cattle grazing in large-scale pastures, which might be determined by the intensity and grazing patterns of various stocking densities at the whole pasture level.     

Estimating the active and total soil microbial biomass by kinetic respiration analysis

 A model describing the respiration curves of glucose-amended soils was applied to the characterization of microbial biomass. Both lag and exponential growth phases were simulated. Fitted parameters were used for the determination of the growing and sustaining fractions of the microbial biomass as well as its specific growth rate (μ _max). These microbial biomass characteristics were measured periodically in a loamy silt and a sandy loam soil incubated under laboratory conditions. Less than 1% of the biomass oxidizing glucose was able to grow immediately due to the chronic starvation of the microbial populations in situ. Glucose applied at a rate of 0.5 mg C g^–1 increased that portion to 4–10%. Both soils showed similar dynamics with a peak in the growing biomass at day 3 after initial glucose amendment, while the total (sustaining plus growing) biomass was maximum at day 7. The microorganisms in the loamy silt soil showed a larger growth potential, with the growing biomass increasing 16-fold after glucose application compared to a sevenfold increase in the sandy loam soil. The results gained by the applied kinetic approach were compared to those obtained by the substrate-induced respiration (SIR) technique for soil microbial biomass estimation, and with results from a simple exponential model used to describe the growth response. SIR proved to be only suitable for soils that contain a sustaining microbial biomass and no growing microbial biomass. The exponential model was unsuitable for situations where a growing microbial biomass was associated with a sustaining biomass. The kinetic model tested in this study (Panikov and Sizova 1996) proved to describe all situations in a meaningful, quantitative and statistically reliable way. Received: 19 July 1999     

Phosphorus in the soil microbial biomass

Phosphorus in the soil microbial biomass (biomass P) and soil biomass carbon (biomass C) were linearly related in 15 soils (8 grassland, 6 arable, 1 deciduous woodland), with a mean P concentration of 3.3% in the soil biomass. The regression accounted for 82% of the variance in the data. The relationship was less close than that previously measured between soil biomass C and soil ATP content and indicates that biomass P measurements can only provide a rough estimate of biomass C content. Neither P concentration in the soil biomass, nor the amount of biomass P in soil, were correlated with soil NaHCO₃-extractable inorganic, organic or total P.The calculated mean annual flux of P through the biomass (in a soil depth of 10 cm) in 8 grassland soils was large, 23 kg P ha^?1 yr^?1, and more than three times the mean annual P flux through 6 arable soils (7 kg P ha^?1 yr^?1), suggesting that biomass P could make a significant contribution to plant P nutrition in grassland.About 3% of the total soil organic P in the arable soils was in microbial biomass and from 5 to 24% in the grassland soils. The decline in biomass P when an old grassland soil was put into an arable rotation for about 20 yr was sufficient to account for about 50% of the decline in total soil organic P during this period. When an old arable soil reverted to woodland, soil organic P doubled in 100 yr; biomass P increased 11-fold during the same period.     

土壤微生物体氮的季节性变化及其与土壤水分和温度的关系

以杨陵土垫旱耕人为土(中等肥力红油土)为供试土壤进行田间试验和室内培养试验,研究土壤微生物体氮的动态变化及其土壤含水量和温度的关系。结果表明,田间土壤微生物体氮的变化有明显的季节性;夏季最高,冬季最低,其它时期居中;且与土壤温度有显著或极显著的正相关性,相关系数在0.855以上;试验期间土壤水分含量在10%以上,基本能满足微生物活动所需,因而微生物体氮的变化与水分关系并不密切。应用培养试验结果进一步证明了田间试验结果,即在4～36℃范围内,微生物体氮与温度呈线性相关,而在土壤含水量为6.75%～23.23%范围内,与水分呈指数相关关系,当土壤水分小于10.87%时,水分对微生物体氮有突出结果,当超过10.87%后,几乎没有影响。频繁的干湿交替会使微生物体氮显著减少,但冻融交替却无明显影响。     

The microbial biomass in paleosols buried under kurgans and in recent soils in the steppe zone of the Lower Volga region

The total microbial biomass (TMB) was assessed in the chestnut and light chestnut soils and in the paleosols under burial mounds (steppe kurgans) in the Lower Volga region on the basis of data on the organic carbon content in the extracted microbial fraction supplemented with the data on the extraction completeness as a conversion coefficient. The completeness of the microbial fraction extraction was determined by direct counting of the microbial cells and colony-forming units (on plates with soil agar). The total microbial biomass varied from 400 to 6600 μg of C/soil. Its values in the buried soils were 3–5 times lower than those in the surface soils. The TMB distribution in the buried chestnut soil profile was close to that in its modern analogue (with the minimum in the B1 horizon). In the buried light chestnut paleosols, the TMB values usually increased down the profile; in the recent light chestnut soils, the maximum TMB values were found in the uppermost horizon.     

Soil microbial communities under different soybean cropping systems: Characterization of microbial population dynamics, soil microbial activity, microbial biomass, and fatty acid profiles

This work analyzes the direct effect of soil management practices on soil microbial communities, which may affect soil productivity and sustainability. The experimental design consisted of two tillage treatments: reduced tillage (RT) and zero tillage (ZT), and three crop rotation treatments: continuous soybean (SS), corn–soybean (CS), and soybean–corn (SC). Soil samples were taken at soybean planting and harvest. The following quantifications were performed: soil microbial populations by soil dilution plate technique on selective and semi-selective culture media; microbial respiration and microbial biomass by chloroform fumigation-extraction; microbial activity by fluorescein diacetate hydrolysis; and fatty acid methyl ester (FAME) profiles. Soil chemical parameters were also quantified. Soil organic matter content was significantly lower in RT and SS sequence crops, whereas soil pH and total N were significantly higher in CS and SC sequence crops. Trichoderma and Gliocladium populations were lower under RTSS and ZTSS treatments. Except in a few cases, soil microbial respiration, biomass and activity were higher under zero tillage than under reduced tillage, both at planting and harvest sampling times. Multivariate analyses of FAMEs clearly separated both RT and ZT management practices at each sampling time; however, separation of sequence crops was less evident. In our experiments ZT treatment had highest proportion of 10Me 16:0, an actinomycetes biomarker, and 16:1ω9 and 18:1ω7, two fatty acids associated with organic matter content and substrate availability. In contrast, RT treatment had highest content of branched biomarkers (i15:0 and i16:0) and of cy19:0, fatty acids associated with cell stasis and/or stress. As cultural practices can influence soil microbial populations, it is important to analyze the effect that they produce on biological parameters, with the aim of conserving soil richness over time. Thus, in a soybean-based cropping system, appropriate crop management is necessary for a sustainable productivity without reducing soil quality.     

种植小麦的土壤中微生物生物量的动态变化

A controlled release N fertilizer was developed by the carrier method using natural polysaccharides (PS) and urea. The results showed that mixing of PS and urea led to significant control of urea release. When a cross-linker (boric acid or glutaraldehyde) was added, a better control effect was observed. During a 30 min leaching time the nitrogen release rate from the controlled release fertilizer was nearly constant, which was significantly different from normal urea. One of the controlled release mechanisms was related to space resistance from a large molecular structure. Infrared (IR) analysis indicated that interaction of PS with urea was through a hydrogen bond or a covalent bond. These bonds created an a-helix or high molecular network fertilizer carrier system, which was another reason for a controlled nutrient release. Pot experiment showed that nitrogen use efficiency could increase significantly with a carrier fertilizer.     

Functional and molecular responses of soil microbial communities under differing soil management practices

The effects of soil management on some microbiological properties and soil bacterial community structure were evaluated. Two field sites with the same soil type, located on the same geographic area adjacent to one other, have received different soil management practices and cultivation. One site has been subjected for 20 years to intensive horticulture under conventional tillage and irrigation with low quality salt-rich water; the second field site has been uncultivated for a long period and was turned to organic farming practices over the last 5 years and is currently cultivated with fruit orchard. Total bacterial counts, microbial ATP, microbial community metabolic (BIOLOG^®) profiles, and DNA fingerprinting by PCR-DGGE were determined. Two-way ANOVA revealed that total bacterial counts were not significantly (P>0.3) affected by the two different management practices; ATP content was consistently and significantly (P<0.001) lower in salt-water irrigated soil than in organic soil at the three sampling times. The cluster analysis of community level physiological profiles indicated that microbial communities were much more uniform in organic soil than in irrigated one, suggesting that salt-water irrigation could have affected the size of the microbial population, its metabolic activities, as well as its composition. Molecular patterns fitted the BIOLOG^® profile diversity. In particular, at any sampling time, PCR-DGGE patterns of bacterial DNA, extracted by an indirect method, significantly discriminated irrigated from organic soil samples. The PCR-DGGE patterns of total soil DNA, extracted by a direct method, showed a moderate to significant variation among irrigated and organic soil samples. Biochemical, microbiological and molecular data contributed to evidence a significantly different response of indigenous microflora to soil management by using saline water or organic farming.     

长期有机无机肥料配施对干旱区栗钙土微生物量碳的影响

为了阐明不同施肥方式对干旱区栗钙土中微生物量碳含量的影响,利用长期定位试验研究了土壤微生物量碳含量的季节变化及其在不同土层中的分布。结果表明:与对照(CK)相比,不同施肥方式均增加了微生物量碳的平均含量,其中有机肥和无机肥配施(NPKM)的增幅最大,其次是单施有机肥(M),单施化肥(NPK)的增幅最小,增幅分别为56.7%、39.9%和27.3%。不同施肥方式下的微生物量碳均有较明显的季节变化,马铃薯苗期和收获后的微生物量碳含量较低,变化范围为40.6~51.4mg·kg~(-1),马铃薯块茎形成期和膨大期含量最高,变化范围为49.2~63.4mg·kg~(-1)。不同施肥方式下微生物量碳的含量及处理之间的差异在0~10cm土层最大,随着土层的加深,微生物量碳的含量及处理间差异均减小。所以在阴山北麓地区增施有机肥,尤其是有机肥与化肥配合施用对增加耕层土壤有机质,提升微生物量碳含量有重要作用。     

Distribution of microbial biomass down soil profiles under regenerating woodland

Adenosine triphosphate (ATP) was measured in soil profiles taken from two areas of deciduous woodland on Rothamsted Farm, one near neutral, one acidic. Biomass carbon (C) was calculated from these measurements. Comparison of the results with others taken from the literature showed that an exponential function m=e^−(r_bd) gave a close fit to the assembled data for the top metre of mineral soil, where m is biomass C, expressed as a fraction of that in the topsoil, d the depth (in cm, measured downwards from the middle of the topmost sampling layer) and r_b a constant, in cm⁻¹. The mean value for r_b for 12 soils (including our two) is 0.046 cm⁻¹, with a SD of ±0.0078.     

Size and activity of the soil microbial biomass under grass and arable management

 The effects of 5 years of continuous grass/clover (Cont grass/clover) or grass (Cont grass) pasture or 5 years of annual grass under conventional (Ann grass CT) or zero tillage (Ann grass ZT) were compared with that of 5 years of continuous barley (LT arable) on a site which had previously been under arable crops for 11 years. For added comparison, a long-term grass/clover pasture site (LT past) nearby was also sampled. Soil organic C (C_org) content followed the order LT arable=Ann grass CT<Ann grass ZT<Cont grass=Cont grass/clover<LTpast. Trends with treatment for microbial biomass C (C_mic), basal respiration, flourescein diacetate (FDA) hydrolytic activity, arginine ammonification rate and the activities of dehydrogenase, protease, histidase, acid phosphatase and arylsulphatase enzymes were broadly similar to those for C_org. For C_mic, FDA hydrolysis, arginine ammonification and the activities of histidase, acid phosphatase and arylsulphatase, the percentage increase caused by 5 years of continuous pasture (in comparison with LT arable) was 100–180%, which was considerably greater than that for organic C (i.e. 60%). The microbial metabolic quotient (qCO₂) was higher for the two treatments which were mouldboard ploughed annually (LT arable and Ann grass CT) than for the undisturbed sites. At the undisturbed sites, C_org declined markedly with depth (0–15 cm) and there was a similar stratification in the size and activity of C_mic and enzyme activity. The microbial quotient (C_mic/C_org) declined with depth whilst qCO₂ tended to increase, reflecting a decrease in the proportion of readily available substrate with depth. Received: 7 July 1998     

Environmental conditions rather than microbial inoculum composition determine the bacterial composition,microbial biomass and enzymatic activity of reconstructed soil microbial communities

The composition of microbial communities and the level of enzymatic activity in the soil are both important indicators of soil quality, but the mechanisms by which a soil bacterial community is generated and maintained are not yet fully understood. Two soil samples were collected from the same location, but each had been subjected to a different long-term fertilization treatment and was characterized by different microbial diversity, biomass and physicochemical properties. These samples were γ-sterilized and swap inoculated. Non-sterilized soil samples along with sterilized and inoculated soil samples were incubated for eight months before their nutrient content, microbial biomass, enzymatic activity and bacterial composition were analyzed. Total phosphorus, and potassium concentrations along with the overall organic matter content of the non-sterilized soil were all equal to those of the same soil that had been sterilized and self/swap inoculated. Additionally, the microbial biomass carbon concentration was not affected by the specific inoculum and varied only by soil type. The activities of catalase, invertase, urease, protease, acid phosphatase and phytase were smaller in the sterilized soils that had been inoculated with organisms from chemical fertilizer amended soil (NPK) when compared to sterilized soil inoculated with organisms from manure and chemical fertilizer amended soil (NPKM) and non-sterilized soil samples. Bacterial 16S rRNA examined by 454-pyrosequencing revealed that the composition of bacterial community reconstructed by immigrant microbial inoculum in the soil was mainly influenced by its physicochemical properties, although the microbial inoculum contained different abundances of bacterial taxa. For example, the pH of the soil was the dominant factor in reconstructing a new bacterial community. Taken together, these results demonstrated that both soil microbial composition and functionality were primarily determined by soil properties rather than the microbial inoculum, which contributed to our understanding of how soil microbial communities are generated and maintained.     

Impact of organic amendments on the dynamics of soil microbial biomass and bacterial communities in cultivated land

In the course of a 1 year study on agricultural plots (mustard-beet) the impact of organic materials and soil management on soil microbial communities was assessed after amendment with three types of organic materials (sewage sludge, turkey manure and compost made of turkey manure and ligneous waste) and a mineral fertilizer. Transient impacts on potential metabolic activity, on genetic structure and on quantities of soil microorganisms, measured with three different methods (C_mic, total DNA content and CFU enumeration), were observed. The extent of these impacts depended on the composition of the amendment. The proportions of mineralisable carbon and lignin in organic materials seemed to influence the behaviour of the bacterial communities during the first 3 months after amendment. After a period of 6 months, no effect specific to the type of organic materials was detected. The dynamics of microbial biomass was assessed by both microbial carbon and by total DNA, but no correlation was found between the results; DNA seemed to be more sensitive to time-related variations in microbial biomass. Finally, although the bacterial functional and genetic structures were strongly modified between 3 and 6 months, this modification was not related to the type of amendment. This result suggests that organic amendments have less effect than seasonal variations or others anthropic factors such as the mechanical management of the soil.     

Adenosine triphosphate and microbial biomass in soil

Two methods for measuring adenosine 5'-triphosphate (ATP) in soil were compared, one based on extraction with NaHCO₃-CHCl₃ and thel other on extraction by a trichloracetic acid-phosphate-paraquat reagent. Recoveries of added ATP were greater with the NaHCO₃-CHCl₃ reagent but the extraction of “native” soil ATP by NaHCO₃-CHCl₃ was only about a third of that by TCA-phosphate-paraquat.Microbial biomass C and ATP were measured in 8 contrasting English soils, using the fumigation method to measure biomass C and the TCA-phosphate-paraquat method to measure ATP. Except in one acid woodland soil, the ratio (ATP content of the soil)/(biomass C content of the soil) was relatively constant, with a mean of 7.3 mg ATP g^?1 biomass C for the different soils. This value is very similar to that obtained earlier in a range of 11 grassland and arable soils from Australia. Taking the English and Australian grassland and arable soils together, there is a close (r = 0.975) linear relationship between ATP and microbial biomass C that holds over a wide range of soils and climates. From this relationship, the soil biomass contains 7.25 mg ATP g^?1 biomass C, equivalent to an ATP-to-C ratio of 138, or to 6.04 μmoles ATP g^?1 dry biomass.The acid woodland soil (pH 3.9) contained much less biomass C, as measured by the fumigation method, than would have been expected from this relationship. This, and other evidence, suggests that the fumigation method for measuring microbial biomass C breaks down in strongly acid soils.The ATP content of the biomass did not depend on the P status of the soil, as indicated by NaHCO₃-extractable P.