Development of co-dominant amplified polymorphic sequence markers for resistance of sunflower to downy mildew race 730

The inheritance of the reaction of sunflower to downy mildew was investigated using resistant and susceptible near isogenic lines (NILs) and their F₃ families. Resistance to race 730 was evaluated using the whole seedling inoculation technique. Seventy-three F₃ families were inoculated, among which 54 families were resistant and 19 susceptible, fitting a 3 : 1 segregation ratio. F₃ families were also studied using several PCR markers. Ten markers at the Pl6 locus, specific for the resistant line, also segregated in F₃ families with a 3 : 1 ratio. The same segregation ratio occurred for microsatellite haplotypes that resembled the resistant parent, and were amplified with ORS 166 and ORS 1043. The only common fragment that was observed between resistant and susceptible parental lines was one of the TIR-NBS-LRR resistance gene analogue markers, having a restriction site. Two co-dominant cleaved amplified polymorphic sequence (CAPS) markers were obtained. The mapping data indicate that several dominant markers and two CAPS markers, developed here, completely co-segregate with the Pl6 gene conferring resistance to race 730. CAPS markers will facilitate efficient marker-assisted selection for sunflower resistance to downy mildew race 730.     

Identification of AFLP and RAPD markers linked to anthracnose resistance in grapes and their conversion to SCAR markers

Resistance to anthracnose or black spot ( Elsinoe ampelina ), a serious fungal pathogen in viticulture and table grape production, was investigated on 25 grape cultivars. Bioassays performed with culture filtrates produced by the pathogen revealed 14 resistant genotypes. In most plants resistance originated from Vitis labrucsa but also genotypes with V. rupestris and V. riparia  ×  V. rupestris background showed resistance. Genetic analysis was conducted in F₁, S₁ and BC₁ plants developed from various cultivars. In total, 326 F₁ plants were evaluated, 172 genotypes proofed to be resistant, whereas 154 were susceptible to anthracnose. A Mendelian segregation ratio of 1 : 1 (χ² = 0.30–0.65) indicating that anthracnose resistance is controlled by a single dominant gene. To facilitate the use of marker-assisted selection in grape-breeding PCR-based markers were developed by random amplified polymorphic DNA and amplified fragment length polymorphism in bulk segregant analysis. Finally, OPB 15₁₂₄₇ was developed as a sequence characterized amplified region marker being diagnostic for the locus of resistance to anthracnose in all resistant genotypes tested. Within the 25 grape cultivars OPB 15₁₂₄₇ is diagnostic in the genetic background of both V. labrucsa and V. rupestris and V. riparia  ×  V. rupestris .     

Development and agronomic performance of common bean lines simultaneously resistant to anthracnose, angular leaf spot and rust

The common bean is affected by several pathogens that can cause severe yield losses. Here we report the introgression of resistance genes to anthracnose, angular leaf spot and rust in the 'carioca-type' bean cultivar 'Rudá'. Initially, four backcross (BC) lines were obtained using 'TO', 'AB 136', 'Ouro Negro' and 'AND 277' as donor parents. Molecular fingerprinting was used to select the lines genetically closer to the recurrent parent. The relative genetic distances between 'Rudá' and the BC lines varied between 0.0% and 1.99%. The BC lines were intercrossed and molecular markers linked to the resistance genes were used to identify the plants containing the genes of interest. These plants were selfed to obtain the F₂, F₃ and F₄ plants which were selected based on the presence of the molecular markers mentioned and resistance was confirmed in the F₄ generation by inoculation. Four F_4:7 pyramid lines with all the resistance genes showed resistance spectra equivalent to those of their respective donor parents. Yield tests showed that these lines are as productive as the best 'carioca-type' cultivars.     

Inheritance and gene tagging of male fertility restoration of cytoplasmic-nuclear male-sterile line NJCMS1A in soybean

The F₁, F₂ and F_2:3 of the NJCMS1A × 'Zhongdou 5' cross were used to analyse the inheritance of the male fertility restoration of the cytoplasmic-nuclear male-sterile line NJCMS1A in soybean. The results of genetic analysis showed two pairs of dominant genes conferring the male fertility restoration of NJCMS1A, which further confirmed previous results. The F₂ population from the NJCMS1A × 'Zhongdou 5' cross was used for tagging the restorer genes for NJCMS1A with 664 pairs of simple sequence repeat primers selected randomly from the genetic linkage map of soybean published by Cregan et al. (1999) . Satt626 on linkage group M and Satt300 on linkage group A1 of the integrated linkage map by Song et al. (2004) were found to link to the two restorer genes of NJCMS1A. The maximum-likelihood estimates of the genetic distance between the two markers, Satt626 and Satt300, and the two restorer genes of 'Zhongdou 5' were 9.75 and 11.18 cM, respectively.     

Relationships between seed oil content and fatty acid composition in high stearic acid sunflower

The high stearic acid sunflower mutant CAS-3 is characterized by a low seed oil content, which might represent a constraint for the commercial production of high stearic acid sunflower oil. The objective of the present research was to investigate the relationships between fatty acid profile and seed oil content in CAS-3. Plants of CAS-3 were reciprocally crossed with plants of breeding line ADV-37, with high oil content and standard fatty acid profile. Oil content and fatty acid composition were measured in individual F₂ seeds and F₂ plants (F₃ seeds averaged). Both F₂ seeds and F₂ plants from the cross ADV-37 × CAS-3 had a significantly higher oil content than those from the reciprocal cross, which indicated the existence of cytoplasmic effects in the genetic control of the trait. A consistent negative correlation between oil content and palmitic acid and a positive correlation between oil content and oleic acid were detected both in F₂ seeds and F₂ plants. Conversely, no consistent correlation between oil content and stearic acid was observed, which suggested the feasibility of simultaneous selection for both traits.     

Relationship of Root and Shoot Characters in Parent, F1 and F2 Populations of Rice

The direct and indirect contributions of root characters — root length, roots/plant, fresh and dry root weight on grain yield/plant were worked out from a 7 × 7 diallel set of rice hybrids. The materials were grown in pots with four replications. Path analysis was done at genotypic level of correlation.
The grain yield/plant showed positive correlation with all the root characters in parent, F₁ and F₂ except with roots/plant in F₁ population. Fresh root weight demonstrated positive direct effect on grain yield/plant in all the three generations. Roots/plant had highly positive direct effect in F₂. Direct effects were negative in respect of root length and dry root weight in F₂ generation.     

Inheritance of aroma compounds in a model population of Fragaria × ananassa Duch.

The inheritance of important aroma compounds is demonstrated by the use of a model population of Fragaria  ×  ananassa . Two cultivars were chosen for the crossing, 'Mieze Schindler' and 'Elsanta', which differ strongly in pedigree, phenotype, and fruit traits, including flavour. Two hundred seedlings of this cross-combination were randomly selected from a population of 438 seedlings and propagated, with three plants per seedling. Aroma analysis was performed by automated headspace solid phase micro-extraction in combination with non-targeted data analysis (pattern recognition). This method can assist breeding programmes by the preparation and analysis of hundreds of samples by a simple procedure. The method was backed up by the substance identification using gas chromatography/mass spectrometry. Data processing of 78 detectable volatile compounds by Chromstat^TM in the F₁ population showed very high variability of the volatile patterns. The ester methyl anthranilate (MA) is a discriminative key compound, being present only in the mother cultivar 'Mieze Schindler', and not detectable in 'Elsanta'. Methyl anthranilate was detectable in one fourth of the F₁ population. This low degree of inheritance shows that this important compound is easily lost in the breeding process, which could explain why all investigated modern cultivars do not contain MA. The results are valuable for the choice of breeding partners and for selection in seedling populations.     

Cytogenetic analysis of F1, F2 and BC1 plants from intergeneric sexual hybridization between Sinapis alba and Brassica oleracea by genomic in situ hybridization

By intergeneric sexual hybridization between Sinapis alba and Brassica oleracea , F₁, F₂ and BC₁ progeny plants were produced. S. alba plants (genome SS, 2n = 24) were pollinated with B. oleracea (genome CC, 2n = 18), and the fertile F₁ plants were pollinated with B. oleracea to obtain BC₁ plants. GISH analysis showed that 10 out of 12 F₁ plants had 12 S. alba chromosomes (one full S chromosome set) and nine B. oleracea chromosomes (one C chromosome sets), representing the expected hybrids. However, two F₁ plants had 12 S chromosomes and 18 C chromosomes (two C chromosome sets), indicating unexpected hybrids. A maximum of three trivalents between C and S chromosomes were identified at metaphase I of semi-fertile F₁ pollen mother cells (PMCs), which indicates homology and chromosome pairing between these two genomes. The C genome had obviously been doubled in two F₂ plants from selfed semi-fertile F₁ plants. BC₁ plants consisted of 18 C chromosomes and different numbers of one, five and six additional S chromosomes, respectively. Monosomic alien addition lines developed in the present study can be used for B. oleracea breeding and Sinapis alba gene mapping.     

Molecular mapping of a new red mutant gene (Rs) in upland cotton

In recent years, there has been slow progress in improving cotton yield. It is known that the F₁ generation from the cross of the new red mutant and the normal green leaf plant has high photosynthetic efficiency. Therefore, cloning the new red mutant gene and further introducing it into other crops through transgenic techniques is a promising approach for achieving high photosynthetic efficiency through breeding. To map this new mutant gene, tentatively named R _s , the authors constructed an F₂ generation containing 1214 individual plants from mutant EH083 ( Gossypium hirsutum ) and Hai 7124 ( Gossypium barbadense ). Fifty-five pairs of simple sequence repeats and sequence-related amplified polymorphism (SRAP) primers on chromosome 7 were selected to screen the two parents. Finally, the R _s gene was mapped at the 0.3 cM interval flanked by markers NAU3735 and NAU1048.     

Development of STS markers and QTL validation for common bacterial blight resistance in common bean

Common bacterial blight (CBB) of common bean ( Phaseolus vulgaris L.), is one of the major diseases that decrease yield and quality. A major quantitative trait locus (QTL) for CBB resistance from line XAN 159 was transferred into two bean lines, HR45 and HR67. Previous studies identified that two markers are linked to this QTL but the chromosome location was not consistent. To identify more tightly linked markers and to verify the chromosome location, 65 additional markers were mapped using 81 recombinant inbred lines (RILs) derived from a cross HR67 × OAC95-4. The QTL was mapped to a 13 cM region on chromosome 1 and defined by eight molecular markers that explained 25–52% of the phenotypic variation. Six tightly linked amplified fragment length polymorphism markers (0.6–9.7 cM from the QTL peak) were converted into seven sequence tagged site markers, three of which were mapped to this QTL. Five tightly linked markers were used to screen 907 F₂ plants derived from a cross HR45 × 'OAC Rex' and four of them were linked to each other within 4.2 cM. These markers may be useful in marker-assisted selection and map-based cloning of this major QTL.     

Identification and inheritance of a new gene for powdery mildew resistance in mungbean (Vigna radiata L. Wilczek)

Powdery mildew (PM) is one of the important foliar diseases of mungbean. Resistance sources have been identified in India and the inheritance studies showed that complete resistance (RO) was controlled by two dominant genes, Pm1 , Pm2 . The breakdown of complete resistance (RO) into moderate resistance (R2) by race-2 (Akola) has been reported. It is assumed that the change in resistance reaction is due to a mutation in the pathogen. The present investigation was carried out with a view to screen germplasm, cultivars and mutants for identification of complete resistance (RO) sources against race-2 and to study their inheritance. 'Mulmarada', a local mungbean cultivar from Maharashtra state of India was identified as a complete resistance (RO) source for race-2. The inheritance of Mulmarada's resistance (RO) was studied. The F₁ and the segregation in F₂ and F₃ showed that the complete resistance (RO) in 'Mulmarada' is controlled by a single dominant gene, which is different from the earlier identified Pm1 and Pm2 resistance genes. Mulmarada's resistance gene is designated as Pm3 for PM resistance.     

Identification and molecular tagging of a stripe rust resistance gene in wheat line P81

Stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), is one of the most devastating diseases in common wheat ( Triticum aestivum L.). With the objective of identifying and tagging a new gene for resistance to stripe rust in wheat line P81, F₁, F₂ and F_2:3 populations from the cross 'Chuanmai 28'/P81 were inoculated with Chinese PST race CYR32 in greenhouse and field trials. P81 carried a single dominant gene for resistance (designated YrP81 ) to CYR32. Tests of allelism showed that YrP81 was different from Yr5 , Yr10 , Yr15 and Yr26 . Simple sequence repeat (SSR) and resistance gene-analogue polymorphism (RGAP) between the parents were used for genotyping the F₂ populations. YrP81 was closely linked to four SSR loci on chromosome 2BS with genetic distances of 18.3 cM ( Xwmc25 ), 1.8 cM ( Xgwm429 ), 4.1 cM ( Xwmc770 ) and 5.3 cM ( Xgwm148 ). Two RGAP markers RGA1 (NLRR/XLRR) and RGA2 (Pto kin4/NLRR-INV2) were also closely linked to YrP81 with genetic distances of 4.7 and 6.3 cM, respectively. The linkage map of YrP81 and molecular markers was established in the order Xwmc25 - RGA2 - RGA1 - Xgwm429 - YrP81 - Xwmc770 - Xgwm148 . Pedigree analysis, response patterns with Chinese PST races and associations with markers suggested that YrP81 is a novel stripe rust resistance gene. The PCR-based microsatellite and RGAP markers identified here could be applied in selection of YrP81 in wheat breeding.     

Diallel analysis of sugar composition of 10 vegetable soybean lines

Few studies have evaluated vegetable soybean for sugar content at the green pod stage. Information on combining ability and type of gene action that governs inheritance of seed traits can help breeders to select suitable parents and devise an appropriate breeding strategy. Ten vegetable soybean accessions were crossed in a complete diallel mating design. Parent lines and F₂ and F₃ progenies were evaluated for two nutritional components. In this study, both general and specific combining ability and reciprocal effects were significant for sucrose and total sugar. Cultivars 'Kanrich', 'Pella', 'Verde' and V81-1603 had good general combining ability for high sucrose. In general, high sucrose content was observed in progeny of the early maturity group genotypes 'Kanrich', 'Pella' and 'Verde'. The best combiners for high total sugar content were 'Verde', V81-1603 and PI 399055. These genotypes could serve as genetic sources in a vegetable soybean breeding programme.     

Pea weevil, Bruchus pisorum L. (Coleoptera: Bruchidae), resistance in Pisum sativum×Pisum fulvum interspecific crosses

The pea weevil, Bruchus pisorum (L.), is one of the most intractable pest problems of cultivated pea, Pisum sativum L., in the world. This study investigated the transfer of pea weevil resistance from two accessions (PI 595946, PI 343955) of wild pea, Pisum fulvum Sibth. & Sm., to interspecific populations derived from crossing these accessions with a weevil-susceptible pea cultivar ('Alaska 81'). Partial life tables characterized weevil stage-specific mortality and survivorship on parents and interspecific progeny in two glasshouse trials. Larval mortality rates on pods (F₃ plants) of several F_2:3 families were between 36.0% and 52.9%. These means were statistically similar to mean mortality rates on pods of resistant parents (45.4% and 46.2%), but significantly greater than mean rates on the susceptible parent (1.2% and 10.6%). Pod surface characteristics contributed to high neonate larval mortality on pods of resistant parents and interspecific progeny. Seed resistance was not broadly transferred to interspecific progeny [revealed by high weevil survivorship in seeds (means mostly >80%) and high seed damage ratings of 3–5 where ratings of 1–2 denote resistance (production of resistant seed averaged 4.2% to 22.8%)]. Estimates of total weevil mortality on pods and seeds of eight F_2:3 families were 50–70%. Thus, weevil resistance in the Pisum secondary gene pool can be transferred to interspecific progeny, thereby providing a potential avenue to develop weevil-resistant pea cultivars.     

A CAPS marker TAO1902 diagnostic for the I-2 gene conferring resistance to Fusarium oxysporum f. sp. lycopersici race 2 in tomato

Fusarium oxysporum f. sp. lycopersici inhabits most tomato-growing regions worldwide, causing tomato production yield losses. A molecular marker linked to resistance would be useful for tomato improvement programmes. Thus, a cleaved amplified polymorphic sequence (CAPS) marker TAO1₉₀₂ was developed to identify tomato genotypes possessing the I-2 gene, which confers resistance to F. o. lycopersici race 2. The Rsa I or Fok I restriction fragments corresponded to the presence or absence of the I-2 allele in a segregating 100 F₂ progeny, tomato cultivars, 16 resistant and 20 susceptible to Fusarium wilt, respectively, lines and F₁ hybrids, representing various tomato gene pools. TAO1₉₀₂ may be helpful for selection of F. o. lycopersici -resistant tomato germplasm.     

Production and characterization of an amphidiploid line between Brassica rapa and a wild relative Diplotaxis tenuifolia

Intergeneric hybridization was performed between Brassica rapa and Diplotaxis tenuifolia following embryo rescue. Twenty-three F₁ hybrid plants were developed from the cross B. rapa  ×  D. tenuifolia and confirmed to be amphihaploids with 21 chromosomes in mitosis. Chromosome doubling of F₁ hybrids by colchicine treatment resulted into five amphidiploid plants which exhibited (20–21)_II + (0–2)_I at metaphase I (MI) of pollen mother cells. Sib-crossing and/or open-pollination among amphidiploid plants for more than four generations resulted in the development of an ADt-06 line with reproductive systems capable of maintaining an amphidiploid line. The ADt-06 line was intermediate in some morphological traits between two parental species, and was characterized by a slightly pungent taste as a physiological trait. Analyses for genomic DNA confirmed that this line was a hybrid between two species. This new amphidiploid ADt-06 line could be a useful genetic resource for the breeding of new leafy salad vegetables.     

Co-localization of quantitative trait loci for foliar disease resistance in sorghum

Quantitative trait loci (QTL) analysis of resistance to three foliar diseases, viz. target leaf spot, zonate leaf spot and drechstera leaf blight was undertaken in sorghum using 168 F₇ recombinant inbred lines derived from a cross between '296B' (resistant) and 'IS18551' (susceptible) parents. The genomic region flanked by plant colour locus ( Plcor ) and simple sequence repeat marker Xtxp95 on chromosome SBI-06 harboured disease-response QTL for all the three diseases caused by different fungal pathogens. It is hypothesized that this region on sorghum chromosome SBI-06 could harbour a cluster of disease-response loci to different pathogens as observed in the syntenic regions on rice chromosome 4 and maize chromosome 2. The information gained in this study can be used in deploying marker-assisted selection for foliar resistance and map-based isolation of important disease resistance genes in sorghum.     

Inheritance of very high glucosinolate content in Ethiopian mustard seeds

Seed meal amendments rich in glucosinolates are of interest for soil pest and disease control. The Ethiopian mustard ( Brassica carinata A. Braun) line N2-6215, with very high levels of seed glucosinolates (160 μmol/g), was developed from the line C-101 (116 μmol / g) following mutagenesis. The objective of this research was to study the inheritance of very high seed glucosinolate content. Plants of N2-6215 were reciprocally crossed with plants of the line C-101. The F₁, F₂, and BC₁F₁ plant generations were evaluated in two environments and seeds from individual plants were analysed for total glucosinolate content. The very high glucosinolate content in N2-6215 seeds was largely subject to maternal control. No cytoplasmic effects were detected. The trait was found to be oligogenic and determined by at least two or three genes. The estimates of broad-sense heritability were 0.45 and 0.58 in both environments, whereas the estimates of narrow-sense heritability were 0.35 and 0.50. The moderate heritability and oligogenic control of the trait suggest the feasibility of breeding for increased seed glucosinolate content in Ethiopian mustard.     

Evaluation of the Heterosis on Leaf Photosynthesis of Remote-Cross F1 Rice (Oryza saliva L.)

The heterosis of leaf photosynthesis was studied on the main characters included in the range from CO₂exchange rate (CER) to enzymatic activity using a remote cross F, rice. The CER was significantly higher than those of the parental strains, showing a 111 % heterosis effect on average; at the same time strong heterosis was observed for the leaf area production and growth. Also stomatal and mesophyll conductances increased in the F₁ rice, which may contribute to the increase in CER. Chlorophyll content (Ch1), soluble protein content (SPC) and ribulose 1,5-bisphosphate (RuBP) carboxylase activity (RCA) were measured as the internal factors related to photosynthesis, and compared between the F₁, rice and the parents. For all these factors, the F₁ rice showed low values compared to the parents. Positive heterosis was not expressed here. On the other hand, the specific activity of RCA (RCA/SPC) increased in the F₁, rice, showing a 120% heterosis effect. This may be regarded as one of the main causes for the increase in CER of the F₁, rice. High CER expressed as heterosis concurrently with large leaf area production is one of the important findings in our study, and this may suggest a high possibility of further improvement in biomass production or yield of rice by gathering the advantageous elements into a hybrid plant.     

Resistance sources to Valsa canker (Valsa ceratosperma) in a germplasm collection of diverse Malus species

Although Valsa canker caused by Valsa ceratosperma (Tode ex Fr.) Maire is one of the most destructive diseases in apple ( Malus  ×  domestica Borkh.) especially in eastern Asia, information available to help with breeding against Valsa canker in apples is limited. In this work, 53 accessions of diverse Malus species and their interspecific hybrids were tested for resistance to V. ceratosperma , using an excised shoot assay. Dormant shoots and succulent growing shoots from each accession were inoculated with a virulent isolate AVC-12 of V. ceratosperma , and the length of necrosis was measured at 10 days post-inoculation for the dormant shoots and at 7 days post-inoculation for the growing shoots. The lesion length relative to the susceptible control 'Fuji' in dormant shoots (RL_D) and to that in growing shoots (RL_G) were simple but useful parameters to differentiate between resistant and susceptible accessions. Fourteen accessions from M. baccata , M. florentina , M. halliana , M. micromalus , M. pratii , M. sieboldii , M. yunnanensis , M.  ×  floribunda and M.  ×  platycarpa gave low RL_D and RL_G values of less than 0.6 and were evaluated as resistant regardless of the difference in the stage of growth. The highest level of resistance was found in M. sieboldii . This high level of resistance in M. sieboldii was effective against different isolates of V. ceratosperma .