Shrubs influence arbuscular mycorrhizal fungi communities in a semi-arid environment

Interactions between arbuscular mycorrhizal fungi (AMF) and plants are essential components of ecosystem functioning; however, they remain poorly known in dry ecosystems. We examined the relationship between seven shrub species and their associated AMF community in a semi-arid plant community in southern Spain. Soil characteristics and plant physiological status were measured and related to AMF community composition and genetic diversity by multivariate statistics. We found differences in AMF communities in soils under shrubs and in gaps among them, whereas no differences were detected among AMF communities colonizing roots. Soil nutrients content drove most of the spatial variations in the AMF community and genetic diversity. AMF communities were more heterogeneous in fertile islands with low nitrogen-to-phosphorus ratio and vice versa. AMF genetic diversity increased in soils limited by phosphorus and with high soil organic matter content, while AMF genetic diversity increased in roots growing in soil not limited by phosphorus. Overall, we could not find a clear link between plant performance and the associated AMF community. Our findings show that different shrub species generate islands of fertility which differ in nutrient content and, therefore, support different AMF communities, increasing AMF diversity at the landscape level.     

N,P Contribution and soil adaptability of four arbuscular mycorrhizal fungi

Abstract

A glasshouse study was conducted to investigate the symbiotic efficiency and soil adaptability of four AMF using glass-bead cultivation systems. The results showed that efficiency and adaptability of four fungi varied among three soils. Particularly, efficiency of BEG167 shifted from positive in Beijing soil to negative in Guangdong soil. Furthermore, BEG167 had high adaptability in all three soils. Intraspecific differences of BRG168 and BEG221 were found in efficiency and adaptability in three soils. Taking efficiency and adaptabilty into consideration, it was concluded that BEG167, BEG168 and BEG221 in Beijing soil, BEG151 in Hubei soil, and BEG151 and BEG168 in Guangdong soil were effective AMF for maize.     

Field inoculation effectiveness of native and exotic arbuscular mycorrhizal fungi in a Mediterranean agricultural soil

In sustainable agriculture, arbuscular mycorrhizal (AM) fungal inoculation in agronomical management might be very important, especially when the efficiency of native inocula is poor. Here, we assessed the effect of native and exotic selected AM fungal inocula on plant growth and nutrient uptake in a low input Trifolium alexandrinum-Zea mays crop rotation. We evaluated the effects of four exotic AM fungal isolates on T. alexandrinum physiological traits in greenhouse. Then, the field performances of T. alexandrinum inoculated with the exotic AMF, both single and mixed, were compared to those obtained with a native inoculum, using a multivariate analysis approach. Finally, we tested the residual effect of AM fungal field inoculation on maize as following crop. Multivariate analysis showed that the field AM fungal inoculation increased T. alexandrinum and Z. mays productivity and quality and that the native inoculum was as effective as, or more effective than, exotic AM fungal isolates. Moreover, the beneficial effects of AMF were persistent until the second year after inoculation. The use of native AMF, produced on farm with mycotrophic plants species, may represent a convenient alternative to commercial AM fungal inocula, and may offer economically and ecologically important advantages in sustainable or organic cropping systems.     

Direct and indirect influence of arbuscular mycorrhizal fungi on abundance and community structure of ammonia oxidizing bacteria and archaea in soil microcosms

Both arbuscular mycorrhizal (AM) fungi and ammonia oxidizers are important soil microbial groups in regulating soil N cycling. However, knowledge of their interactions, especially the direct influences of AM fungi on ammonia oxidizers is very limited to date. In the present study, a controlled microcosm experiment was established to examine the effects of AM fungi and N supply level on the abundance and community structure of ammonia oxidizing bacteria (AOB) and archaea (AOA) in the rhizosphere of alfalfa plants (Medicago sativa L.) inoculated with AM fungus Glomus intraradices. Effects were studied using combined approaches of quantitative polymerase chain reaction (qPCR) and terminal-restriction fragment length polymorphism (T-RFLP). The results showed that inoculation with AM fungi significantly increased the plant dry weights, total N and P uptake. Concomitantly, AM fungi significantly decreased the amoA gene copy numbers of AOA and AOB in the root compartment (RC) but not in the hyphal compartment (HC). Moreover, AM fungi induced some changes in AOA community structure in HC and RC, while only marginal variations in AOA composition were observed to respond to N supply level in HC. Neither RC nor HC showed significant differences in AOB composition irrespective of experimental treatments. The experimental results suggested that AM fungi could directly shape AOA composition, but more likely exerted indirect influences on AOA and AOB abundance via the plant pathway. In general, AM fungi may play an important role in mediating ammonia oxidizers, but the AOA community appeared to be more sensitive than the AOB community to AM fungi.     

Patterns of effects of arbuscular mycorrhizal fungi on plants grown in contaminated soil

Arbuscular mycorrhizal fungi (AMF) are integral functioning parts of plant root systems and are widely recognized for enhancing plant growth on severely disturbed sites, including those contaminated with heavy metals. However, the generality of detailed patterns observed for their influence on various metals and oxidative‐stress parameters in multiple plant species is not clarified. The goal of this study was to investigate the patterns of metal‐stress alleviation by AMF in four plant species. For this purpose, clover, sunflower, mustard, and phacelia were inoculated with Glomus intraradices and compared to noninoculated plants grown under heavy metal–stressed conditions. The study focused on the effect of AMF inoculation on plant biomass, assimilating pigments, total protein, superoxide dismutase and peroxidase activity, lipid peroxidation and As, Cd, Co, Cu, Fe, Mn, P, Pb, U, and Zn contents. As a result of inoculation very different patterns of variation were obtained for concentrations of elements and for biochemical parameters in plants. The particular effect of AMF inoculation on plants was species‐ and metal‐specific, although there was a general enhancement of plant growth.     

Community structure of arbuscular mycorrhizal fungi associated with Robinia pseudoacacia in uncontaminated and heavy metal contaminated soils

The significance of arbuscular mycorrhizal fungi (AMF) in soil remediation has been widely recognized because of their ability to promote plant growth and increase phytoremediation efficiency in heavy metal (HM) polluted soils by improving plant nutrient absorption and by influencing the fate of the metals in the plant and soil. However, the symbiotic functions of AMF in remediation of polluted soils depend on plant–fungus–soil combinations and are greatly influenced by environmental conditions. To better understand the adaptation of plants and the related mycorrhizae to extreme environmental conditions, AMF colonization, spore density and community structure were analyzed in roots or rhizosphere soils of Robinia pseudoacacia. Mycorrhization was compared between uncontaminated soil and heavy metal contaminated soil from a lead–zinc mining region of northwest China. Samples were analyzed by restriction fragment length polymorphism (RFLP) screening with AMF-specific primers (NS31 and AM1), and sequencing of rRNA small subunit (SSU). The phylogenetic analysis revealed 28 AMF group types, including six AMF families: Glomeraceae, Claroideoglomeraceae, Diversisporaceae, Acaulosporaceae, Pacisporaceae, and Gigasporaceae. Of all AMF group types, six (21%) were detected based on spore samples alone, four (14%) based on root samples alone, and five (18%) based on samples from root, soil and spore. Glo9 (Rhizophagus intraradices), Glo17 (Funneliformis mosseae) and Acau3 (Acaulospora sp.) were the three most abundant AMF group types in the current study. Soil Pb and Zn concentrations, pH, organic matter content, and phosphorus levels all showed significant correlations with the AMF species compositions in root and soil samples. Overall, the uncontaminated sites had higher species diversity than sites with heavy metal contamination. The study highlights the effects of different soil chemical parameters on AMF colonization, spore density and community structure in contaminated and uncontaminated sites. The tolerant AMF species isolated and identified from this study have potential for application in phytoremediation of heavy metal contaminated areas.     

转Bt基因作物对丛枝菌根真菌的影响研究进展

在过去的十年里，世界范围内转基因作物尤其是抗虫性转Bt基因作物的品种和种植面积迅速增加。同时，转Bt基因作物的环境安全性评价问题成为人们关注和研究的热点。丛枝菌根真菌（AMF）是生态系统中普遍存在的土壤微生物，能与绝大多数植物种类形成共生关系，在农业生态系统中起重要作用。转Bt基因作物环境释放后，其与AMF问的共生关系是否受所转入Bt基因的影响，以及影响机制需要及时研究。为此，综述了转Bt基因作物与AMF共生特征方面的研究进展，并根据Bt毒素发生的空间和时间规律提出了危害机制以及转Bt基因植物的规模化种植将降低农田系统中的AMF的生物多样性的观点。     

Subcritical soil hydrophobicity in the presence of native and exotic arbuscular mycorrhizal species at different soil salinity levels

Soil salinity and arbuscular mycorrhizal fungi (AMF) influence the soil hydrophobicity. An experiment was performed to determine the effects of soil salinity and AMF species on soil water repellency (SWR) under wheat (Triticum aestivum L.) crop. Six AMF treatments, including four exotic species (Rhizophagus irregularis, Funneliformis mosseae and Claroideoglomus claroideum, a mix of three species), one mix native AMF species treatment and an AMF-free soil in combination with four salinity levels (1, 5, 10, and 15 dS m^?1) were used. The soil repellency index (RI) increased with salinity increment ranging from 2.4 to 10.5. The mix of three exotic and native AMF treatments enhanced the RI significantly compared to AMF-free soil in all salinity levels with one exception for native treatment at 1 dS m^?1. Among individual AMF species, the C. claroideum treatment at 10 dS m^?1 increased the RI by 67% compared to AMF-free soil. The native AMF treatment was more efficient in root colonization, glomalin production and SWR development at 10 and 15 dS m^?1, compared to exotic species. In addition to the net positive effect of salinity on SWR, the AMF influences on the RI were greatly dependent on salinity levels.     

Mycelium of arbuscular mycorrhizal fungi increases soil water repellency and is sufficient to maintain water-stable soil aggregates

Using an in vitro bioreactor system in which the arbuscular mycorrhizal (AM) fungus Glomus intraradices was grown in a soil devoid of detectable living microbes, we could show that the mycelium of this fungus contributed to the maintenance of water-stable soil aggregates and increased soil water repellency, as measured by water drop penetration time. This is to our knowledge the first demonstration of a causal link between AM fungal growth and water repellency of soil aggregates. Our results also place AM fungal contributions to soil aggregation on a firm mechanistic footing by showing that hyphae are sufficient to produce effects, in the absence of other soil biota, which have always been included in previous studies.     

Chronic nitrogen deposition and the composition of active arbuscular mycorrhizal fungi

A growing body of evidence indicates that atmospheric nitrogen (N) deposition can alter the composition and function of arbuscular mycorrhizal fungi (AMF) associated with plant roots. We studied the community of AMF actively transcribing ribosomal genes in the forest floor of northern hardwood forests dominated by sugar maple (Acer saccharum Marsh.) that have been exposed to experimental N deposition since 1994 (30 kg NO₃⁻-N ha⁻¹ year⁻¹). Our objective was to evaluate whether previously observed declines in AM root infection and mycelial production resulted in a compositional shift in the AM fungi actively providing resources to plant symbionts under chronic N deposition. To accomplish this task, we cloned and sequenced the LSU of reverse-transcribed AM fungal rRNA extracted from the forest floor under ambient and experimental N deposition treatments. We found that experimental N deposition did not alter the active community of AMF or AMF diversity, but we did observe a significant decrease in rare taxa under chronic N deposition. Our results indicate that chronic N deposition, at levels expected by the end of this century, can exert a moderate influence on the composition and abundance of AMF associated with plant roots in a wide-spread forest ecosystem in the northeastern North America.     

Interaction between earthworms and arbuscular mycorrhizal fungi on the degradation of oxytetracycline in soils

The interactive impact of earthworms (Eisenia fetida) and arbuscular mycorrhizal fungi (Rhizophagus intraradices, AM fungi) on the degradation of oxytetracycline (OTC) in soils was studied under greenhouse conditions. Treatments included maize plants inoculated vs. not inoculated with AM fungi and treated with or without earthworms at low (1 mg kg⁻¹ soil DM) or high (100 mg kg⁻¹ soil DM) OTC rates. The root colonization rate, the hyphal density of mycorrhizae, the residual OTC concentration in soils, catalase, dehydrogenase, urease, soil microbial biomass C, Shannon–Wiener index (H) for microbial communities from T-RFLP profiles were measured at harvest. The results indicated that earthworms and AM fungi would individually or interactively enhance OTC decomposition and significantly decreased the residual OTC concentration at both high and low OTC rates. Both earthworms and AM fungi could promote the degradation of OTC by increasing soil microbial biomass C at both high and low OTC rates. The effect of soil enzyme activity and soil microbial diversity on OTC decomposition was different between high and low OTC rates. Hyphomicrobium and Bacillus cereus were dominant bacteria, and Thielavia and Chaetomium were dominant phyla of fungi at all occasions. Earthworm activity stimulated the growth of Hyphomicrobium and Thielavia, while AM fungi may stimulate B. cereus, Thielavia and Chaetomium, resulting in greater OTC decomposition. The interaction between earthworms and AM fungi in affecting the degradation of OTC may be attributed to different mechanisms, depending on soil microbial biomass, function (enzyme activity) and communities (the abundance of Hyphomicrobium, B. cereus, Thielavia and Chaetomium) in the soil.     

Changes in soil organic carbon,total nitrogen,and abundance of arbuscular mycorrhizal fungi along a large-scale aridity gradient

Changes in soil organic carbon, total nitrogen, pH, and the abundance of arbuscular mycorrhizal fungi are examined along a large-scale aridity gradient from southeast to northwest in China. Soil organic carbon and total nitrogen decreased but pH increased with increased aridity. Aboveground plant biomass, spore abundance, and colonization of roots by arbuscular mycorrhizal fungi also declined as the aridity increased. Soil organic carbon and total nitrogen were positively correlated with aboveground plant biomass, and arbuscular mycorrhizal fungal spore number and root colonization were positively correlated with soil organic carbon, total nitrogen, and aboveground plant biomass but were negatively correlated with soil pH. A structural equation model suggested that aridity affected soil organic carbon and total nitrogen by limiting aboveground plant biomass. Aridity exerted a large direct effect and smaller indirect effects (via changes in aboveground plant biomass) on the abundance of arbuscular mycorrhizal fungi. Soil pH also directly influenced arbuscular mycorrhizal fungal abundance. These results suggest that aboveground plant biomass could be a key factor driving the changes of soil organic carbon, total nitrogen, and arbuscular mycorrhizal fungal abundance along this aridity gradient in China.     

Plant growth stage, fertiliser management and bio-inoculation of arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria affect the rhizobacterial community structure in rain-fed wheat fields

The goal of this study was first to assess the dynamics of the bacterial community during a growing season in three Indian rain-fed wheat fields which differ mainly through their fertilizer management and yield and then to study the effects of PGPR/AMF bio-inoculations on the bacterial community structure and wheat growth. The bacterial community structure of the rhizosphere soil (RS) and the rhizoplane/endorhizosphere (RE) was determined by PCR-denaturing gradient gel electrophoresis. Seed treatments consisted of consortia of two PGPR strains alone or combined with AMF or AMF alone. The PGPR strains were Pseudomonas spp. which included some or all of the following plant growth promoting properties: phosphate solubilisation and production of indole-3-acetic acid, siderophores, 1-aminocyclopropane-1-carboxylate deaminase and diacetyl-phloroglucinol. The mycorrhizal inoculum was an indigenous AMF consortium isolated from the field with the lowest level of fertilization and yield. Variation partitioning analysis of the DGGE data indicated a predominant effect of the wheat growth stage (30.4% of the variance, P=0.001) over the type of field (9.0%, P=0.027) on the bacterial community structure in the RE. The impact of plant age in the RS was less than in the RE and the bacterial community structure of the field with the highest input of fertilization was very different from the low input fields. The bio-inoculants induced a significant modification in the bacterial community structure. In the RS, the bacterial consortia explained 28.3% (P=0.001) and the presence of AMF 10.6% (P=0.02) of the variance and the same trend was observed in the RE. Plant yield or grain quality was either increased or remained unaffected. For example, protein content was significantly higher in the treated plants' grain compared to the control plants; maximum values were obtained when the PGPR were co-inoculated with the AMF. The percentage of root colonization by AMF was significantly higher in the treatments containing a mycorrhizal inoculum than in the untreated control and remained unaffected by the PGPR treatments. In conclusion, the wheat rhizobacterial community structure is highly dynamic and influenced by different factors such as the plant's age, the fertilizer input and the type of bio-inoculant. In addition, there is a distance-related effect of the root on the bacterial community. Finally, a combined bio-inoculation of diacetyl-phloroglucinol producing PGPR strains and AMF can synergistically improve the nutritional quality of the grain without negatively affecting mycorrhizal growth.     

Influence of arbuscular mycorrhizal fungi on storage metabolites,mineral nutrition,and nitrogen-assimilating enzymes in potato (Solanum tuberosum L.) plant

Mycorrhizae are fungal symbionts forming mutualistic relationship with plant roots. In this study, surface-sterilized potato tubers were sown in earthen pots filled with sterile soil. Half of the pots were inoculated with sterilized arbuscular mycorrhizal fungi (AMF) spores and sterilized inoculated maize root fragments, and another half without any AMF inoculation representing control. Inoculation was done twice 3 days before sowing the tubers and on the onset of seedling emergence. Plants, along with their controls, were sampled at 20-day intervals upto 80 days after tuber initiation. The tubers of potato are shown to present a higher level of metabolites and mineral nutrition in the mycorrhizal inoculated compared to the non-inoculated. The results showed that AMF has a potential in enhancing potato production by increasing the storage metabolites, mineral nutrition in tubers and nitrogen assimilating enzymes in plant.     

Colonization, ALP activity and plant growth promotion of native and exotic arbuscular mycorrhizal fungi at low pH

Soil acidity can affect arbuscular mucorrhizal fungi (AMF) in many aspects. In this study, by inoculating white clover (Trifolium ripens L.) with AMF at two pH levels (pH 5.0 and 6.0), we investigated the influences of low pH on the colonization, alkaline phosphatase (ALP) activity and promoting effect of AMF, and also compared the different responses of native AMF community and exotic species (Gigaspora margarita) to low pH. PCR-DGGE profiles revealed the obvious difference in native AMF community structure between low and high pH. Compared to low pH, high pH decreased the total and vesicle colonization, external hyphae length density of native AMF, but exerted no effect on those of exotic AMF. For both native and exotic AMF, high pH enhanced the proportions of arbuscule and fungal structure with ALP activity in colonized roots. Both native and exotic AMF promoted the shoot biomass, with greater increase at low pH than at high pH. Plant growth was more dependent on exotic AMF than on native AMF at both pH levels. The same trends were observed in P uptake as in biomass. Our study suggested that the increase in pH can exert inhibitory effects on AMF species native to acidic soil, including ecological (community structure), functional (ALP activity) and developmental (hyphal length, vesicle and arbuscule percentage, total colonization) aspects, but have no effect on exotic species in the present experiment.     

Earthworms can modify effects of hydrochar on growth of Plantago lanceolata and performance of arbuscular mycorrhizal fungi

Hydrothermal carbonization (HTC) is a method to produce carbonized material at relatively low temperatures (180–250 °C) under pressure and aqueous conditions. The product is called hydrochar and can be used as a soil amendment. However, applied in high dosages it may have detrimental effects on plants or soil biota. The potential impact of hydrochar amendment on beneficial soil organisms such as arbuscular mycorrhizal fungi (AMF) and earthworms and their interactions are not well understood. The goal of the present study was to determine effects of hydrochar on plant growth and soil biota and to evaluate interactions of earthworms and hydrochar on plant and AMF performance and to identify underlying mechanisms. In a greenhouse experiment, we investigated the effect of hydrochar at different addition rates (control, 1% and 10%, v/v) with or without the earthworm Aporrectodea caliginosa on the growth of Plantago lanceolata L. and the performance of its AMF. We observed a positive interaction between earthworms and 10% hydrochar on shoot and root biomass: added as a single treatment hydrochar had a negative effect on plant growth at this dosage, but plant biomass increased significantly when hydrochar was added together with earthworms. Root colonization by AMF increased significantly with increasing concentration of hydrochar, but was not affected by earthworms. Contrastingly, extraradical hyphal length of AMF was reduced by earthworms, but not affected by hydrochar. Thus, hydrochar and earthworms affected the performance of AMF, albeit of different AMF structures and in different directions. Our results indicate that earthworms may play an important role in alleviating the negative impacts of high dosages of hydrochar on plant growth; such interactions should move into focus of future research on potential effects of HTC materials.     

Adaptation of plants and arbuscular mycorrhizal fungi to coal tailings in Indiana

We tested the potential for arbuscular mycorrhizal fungi to mediate plant adaptation to mine soil conditions utilizing a full factorial experiment involving two fungal communities, two ecotypes of plants and two soil types. We found that plants grew larger with fungal communities derived from mine soil regardless of the soil type in which they were grown. There was no evidence that the plants suffered from aluminum toxicity; however, plants grown in coal tailings produced far less biomass than those grown in low-nutrient clay soil. Andropogon virginicus L. grown from seeds collected from a coal mine had increased allocation to roots in sterile soil. Plantago lanceolata L. grown from seeds collected from a coal mine also showed an increased allocation to roots. We concluded that harsh edaphic conditions may help reinforce the symbiotic relationship between plants and AM fungi, resulting in more beneficial symbionts.     

丛枝菌根真菌在植物修复砷污染土壤中的作用

丛枝菌根真菌能增强植物对矿质元素的吸收、提高植物的抗逆性、增强抗病性、改善植物根际微环境,减轻重金属对植物的毒害,影响植物对重金属的吸收和转运,在重金属污染土壤的植物修复中显示出极大的应用潜力。近年来,As污染已成为全球非常突出且急需解决的环境问题之一,对As污染土壤的生物修复也因而成为研究热点。本文主要从丛枝菌根真菌改变土壤pH和酶活性、增强植物对As的耐性和影响植物对As的吸收方面综述了丛枝菌根在As污染土壤修复中应用的研究进展,揭示出菌根应用在As污染土壤中的作用潜力和研究方向。     

丛枝菌根真菌在农业生产中的作用与调控

AM真菌在集约化作物生产体系中的作用日益受到关注。最近10余年间有关AM真菌与植物相互作用的研究由温室、实验室模拟转向田间原位研究,在认识上取得了很大的进展。通过对相关的理论和应用基础研究结果的分析,认为菌根生物技术的应用不仅包括菌剂的生产和施用技术,而且还要包括土著AM真菌群落繁殖体数量和活性的调节技术;通过轮作和间作、少耕或者免耕、使用根际化学信号物质能够在一定程度上有效发挥土著AM真菌群落的作用;充分认识AM真菌群落的时空变化与生态功能的关系可能是今后研究的重点;此外,通过与育种家结合,培育在高肥力土壤上积极响应AM真菌的作物高产品种可能是未来提高土壤养分资源高效利用的有效途径之一。