Comparing population growth rates using weighted bootstrapping: Guiding the conservation management of Petrogale xanthopus xanthopus (yellow-footed rock-wallaby)

In this study we compare estimates of the long-term mean stochastic population growth rates, E[r] for Petrogale xanthopus xanthopus (yellow-footed rock-wallaby), a threatened Australian species. In fluctuating environments such as semi-arid areas, herbivore populations respond directly to changes in the biomass of food resources. Biomass is generally correlated with rainfall, so it is often useful to model annual population growth rates of herbivores directly with rainfall. Models of this nature are referred to as numerical response models. The factors that are thought to threaten this species include competition from introduced herbivores and predation from foxes. Annual aerial survey data collected from 1997 to 2004 over approximately 600 km of transect line were analyzed in seven zones within South Australia. Using the Ivlev numerical response model, the annual population growth rates were found to correlate best with the rain that fell in the seven-month period immediately prior to the surveys. Not surprisingly, positive growth rates were found to be associated with higher rainfalls in this period, while negative growth rates were associated with lower rainfalls. We also used weighted bootstrapping to calculate confidence intervals around our estimates of long-term mean stochastic population growth rates, E[r]. The findings suggest that the estimates of E[r] are positive in areas where there is fox and herbivore management. However, we found no evidence that this species will decline in the absence of these treatments.     

Relationship between population size and genetic diversity in endangered populations of the European bullhead (Cottus gobio): implications for conservation

This study investigated the relationship between the current size of endangered bullhead (Cottus gobio) populations and microsatellite genetic variability. Additionally, the microsatellite data were used to evaluate whether a genetic test for population bottlenecks was able to provide evidence of recent severe population declines. Finally, our results were used to develop conservation priorities and measures. Population size appears to be a crucial parameter in determining the amount of genetic diversity that can be preserved in bullheads, since a significant positive correlation was observed between both variables. Furthermore, in some populations we were able to detect genetic signatures of the documented decline in population size. We suggest that the most immediate goal for bullhead conservation should be to increase the size and the range of the populations, and in doing so minimise or even reverse further genetic erosion. Potential management actions like habitat quality improvement, reduction of river fragmentation and supplementation programmes (translocation, supportive breeding) are discussed.     

Microsatellite analysis of genetic population structure of the endangered cyprinid Anaecypris hispanica in Portugal: implications for conservation

The endangered fish species Anaecypris hispanica is restricted to eight disjunct populations in the Portuguese Guadiana drainage. The genetic structure of these populations was studied in order to determine levels of genetic variation within and among populations and suggest implications for conservation of the species. Based on five microsatellite loci, the null hypothesis of population homogeneity was tested. Tests for genetic differentiation revealed highly significant differences for pairwise comparisons between all populations, and substantial overall population subdivision (F_ST=0.112). All sampled populations contained unique alleles. Our findings indicate marked genetic structuring and emphasise limited dispersal ability. The high levels of genetic diversity detected within and among A. hispanica populations suggest, however, that the observed fragmentation and reduction in population size of some populations during the last two decades, has impacted little on levels of genetic variability. Data imply that most A. hispanica populations should be managed as distinct units and that each has a high conservation value containing unique genetic variation. It is argued that geographic patterns of genetic structuring indicate the existence of eight management units.     

Predator-prey relationships and responses of ungulates and their predators to the establishment of protected areas: A case study of tigers, leopards and their prey in Bardia National Park, Nepal

Interactions among sympatric large predators and their prey and how they respond to conservation measures are poorly known. This study examines predictions concerning the effects of establishing a protected area in Nepal on tigers (Panthera tigris), leopards (Panthera pardus), and their ungulate prey. Within a part of the park, after 22 years the total density of wild ungulates had increased fourfold, to ca. 200 animals/km², almost exclusively due to a remarkable increase in chital deer (Axis axis). Tiger density also increased markedly to nearly 20 animals/100 km², whereas leopard density did not and was ca. 5 animals/100 km². The prediction that grazers should increase more than browsers was only partially supported. The prediction of positive density dependence in prey selection was not supported. Instead, the most abundant species (chital and hog deer, Axis porcinus) were killed less frequently than expected, whereas the lower-density wild boar (Sus scrofa) was preferred. Predictions that (i) initially rare species suffer highest predation was partially supported, that (ii) predation is highest among the most abundant prey was not supported, and that (iii) predation is highest among the most preferred prey independently of their densities was supported. Clearly, the conservation efforts adopted in Bardia were successful, as both tigers and their natural prey base increased. However, the positive numerical response of tigers limited and depressed the abundance of some prey species. Thus, conservation activities aimed at restoring large predators are likely to change in the composition of the overall mammal community, potentially eliminating rare but preferred prey species.     

Responses of cycads with different life histories to the impact of plant collecting: simulation models to determine important life history stages and population recovery times

Collection of plants and seeds from wild populations threatens a large number of cycad species. We investigated to what extent individual life history stages contribute to population growth (λ) and compared two species with major differences in life histories in the African genus Encephalartos: Encephalartos cycadifolius, a highly persistent grassland species that resprouts after fire, and Encephalartos villosus, a relatively fast growing, non-sprouting forest species. Several harvesting scenarios impacting different sized individuals were simulated to determine the sensitivity of the two functional types to harvesting. In both species λ was most sensitive to changes in abundance of adult plants. The harvesting of seeds had minimal impact on population growth rates, whereas harvesting of adult plants led to rapid population decline. This response from two very different functional types suggests that the conservation of adult plants is critical for all cycad species. Despite similar responses to adult mortality, the two species had substantially different population growth rates. This determined recovery time after harvesting of adult individuals. Encephalartos cycadifolius is typical of highly persistent plant species associated with low levels of recruitment and unable to recover from even small losses of adults within a reasonable conservation time frame (<100 years). Our results suggest that the ability to recover from loss of individuals is an important factor that should be considered when assessing the vulnerability of wild populations to threats.     

Sampling on private property to evaluate population status and effects of land use practices on the gopher tortoise, Gopherus polyphemus

Although private properties are predicted to play an increasingly significant role in conservation, surveys of species of special concern are rare on these lands. We created a template for a multi-county survey of randomly selected sites and sampled for burrows of the gopher tortoise (Gopherus polyphemus) in south-central Georgia, USA. Current land use was strongly correlated with tortoise population condition. The highest densities of tortoise burrows were found on lands with open-canopied pine stands that were managed with prescribed fire, a practice associated with types of selection forestry and/or wildlife management. Agricultural sites and unburned areas provided poor habitat and pine plantations were only slightly better. Our estimates of tortoise population densities indicated that the current landscape supports less than 20% of the animals present before implementation of modern land use practices. In addition, our estimate for density of active burrows was approximately one third of that projected for the entire state range 20 years ago by Auffenberg and Franz [Auffenberg, W., Franz, R., 1982. The status and distribution of the gopher tortoise (Gopherus polyphemus). In: Bury, R.B. (Ed.), North American Tortoises: Conservation and Ecology (US Fish and Wildlife Service Wildlife Research Report 12). pp. 95-126]. However, some good sites for gopher tortoises remain in south Georgia and our data also suggested that extraordinary conservation actions may not be required if ways can be developed to retain traditional land management practices on private property.     

AFLP fingerprinting of Anchusa (Boraginaceae) in the Corso-Sardinian system: Genetic diversity, population differentiation and conservation priorities in an insular endemic group threatened with extinction

Although several plants endemic to Corsica and Sardinia are included in various redlists, no attempts have been made to analyse their genetic diversity with molecular techniques. Genus Anchusa occurs with seven taxa in either mountain or coastal habitats of the two islands, but the very restricted range and low population size pose these endemisms in a very precarious conservation status. Highly variable markers (AFLP) were therefore used to analyse the patterns and levels of genetic diversity in a sample of 11 populations from the entire range of the group.Results indicate the separation between a mountain genic pool including Anchusa formosa, Anchusa capellii and Anchusa montelinasana, and four groups of coastal accessions. In spite of small size, mountain taxa show low interpopulation differentiation (F_st = 0.02) and relatively high intrapopulation genetic variation (0.365), while coastal accessions showed on average a stronger differentiation (mean F_st = 0.20) and a lower diversity (0.281), possibly due to higher rates of inbreeding. The particularly low levels of variation found in A. sardoa, A. littorea and A. crispa ssp. maritima from the Coghinas bay are likely due to a historical decrease of populations and to bottleneck events caused by loss of habitat and natural stochastic factors on sand dune ecosystems. While habitat maintenance and regulation of grazing by domestic herbivores should be sufficient to ensure the persistence of the mountain endemics, additional actions of in situ and ex situ conservation are needed for the critically endangered coastal species A. sardoa and A. littorea. A. crispa showed a relatively high variation, especially on Corsica. No correlation between population size and genetic variation was found in the latter species, highlighting the importance of the small patches for its conservation. Also, the genetic separation between subspecies crispa and maritima stresses the need of keeping them distinct in redlists and conservation actions on Sardinia.     

Sperm storage and low incidence of multiple paternity in the European pond turtle, Emys orbicularis: A secure but costly strategy?

The freshwater pond turtle, Emys orbicularis, has recently suffered from population declines throughout its range, mainly due to habitat destruction. The mating strategies of this species were studied using genetic data from successive clutches within and between years. To test for the occurrence and frequency of multiple paternity and sperm storage, genetic paternity at six microsatellite markers was assessed in 114 embryos and hatchlings from single and subsequent clutches of 11 females (including clutches from the same or consecutive years). Multiple paternity was rare and only found in two out of 20 clutches from 11 females. All annual successive clutches and 58% of the clutches in the next year, were fertilized with sperm from the same male. The use of stored sperm is thus a frequent strategy in E. orbicularis. However, hatching rate, hatchling mass, and hatchling length decreased in clutches fertilized by stored sperm, suggesting sperm depletion or deterioration through time. The occurrence of stored sperm despite an associated reduced reproductive output indicated that mating and/or the fertilization process is costly to females. The low incidence of multiple paternity may simply be the residual consequence of the capacity to store viable sperm. These results provide important and innovative insights for the conservation of E. orbicularis. In threatened populations, management strategies may aim to enhance effective copulations in order to increase the reproductive output of females.     

MtDNA genetic diversity and population history of a dwindling raptorial bird, the red kite (Milvus milvus)

The red kite (Milvus milvus) occurs in a relatively small area in the southwestern Palearctic region, with population strongholds in Central Europe. Following strong human persecutions at the beginning of the 20th century, populations have receded, particularly in peripheral areas and islands. In order to describe and compare levels of genetic diversity and phylogeographic patterns throughout its entire distribution in Europe, sequence variation of a 357 bps part of the mitochondrial DNA control region was assessed in eight populations and 105 individuals. Overall, results indicate that population declines have affected red kite mtDNA variation. We found low levels of genetic diversity (values of nucleotide diversity ranging from 0 in Majorca island to 0.0062 in Central Europe), with only 10 distinct haplotypes, separated by low levels of genetic divergence (mean sequence divergence = 0.75%). Highest haplotype and nucleotide diversities match with demographic expectations, and were found in Central European and Central Spanish samples, where present strongholds occur, and lowest values in the declining southern Spanish and insular samples. Φst estimates indicated moderate gene flow between populations. Phylogeographic patterns and mismatch distributions analyses suggest central European regions may have been colonized from southern glacial refugia (in the Italian or Iberian peninsulas). Interspecific phylogenetic comparisons and divergence date estimates indicated the genetic split between the red kite and its closely related species, the black kite (Milvus migrans), might be relatively recent. The low level of genetic variation found in the red kite mitochondrial control region, compared to the black kite, is likely the result of relatively recent divergence (associated with founder events), successive bottlenecks and small population sizes. As there are several ongoing projects aimed at reinforcing populations in countries such as the United Kingdom, Italy or Spain, our results may prove useful for the genetic management of the species.     

Impact of human dwellings on the distribution of the exotic Argentine ant: a case study in the Doñana National Park, Spain

The invasive Argentine ant Linepithema humile was found in close perimeters to inhabited houses situated in various habitat types in Doñana National Park (Southern Spain). We suggest that the Argentine ant is found in these sites largely due to passive importation by man, but from there may have the potential to spread into surrounding favourable natural habitats. Ant species richness and diversity around houses was similar to that in natural habitats, except in the cases where the Argentine ant dominated, where a considerable lower ant species diversity and richness was observed. The species composition of ants in the immediate vicinity of houses was very different from that of the surrounding natural habitats, although the species composition between houses was very similar, regardless of the type of surrounding natural habitat. Ant species around houses were typically generalists, opportunists or open habitat specialists. Many of these species are considered dominant in that they are characterised by having large nests, aggressive behaviour and mass recruitment in response to attack. However, these species are displaced by the Argentine ant when introduced. Not all ant species show the same responses to invasions by the Argentine ant, and some species, such as Cardiocondyla batesii, Oxyopomyrmex saulcyi or Cataglyphis floricola, may be able to persist for a period following an invasion of the Argentine ant. These species are characterised by small nests and submissive behaviour, and may survive by avoiding conflict with the invasive species.