Performance of para-nitrophenyl phosphate and 4-methylumbelliferyl phosphate as substrate analogues for phosphomonoesterase in soils with different organic matter content

Phosphomonoesterase (PMEase) activity plays a key role in nutrient cycling and is a potential indicator of soil condition and ecosystem stress. We compared para-nitrophenyl phosphate (pNPP) and 4-methylumbelliferyl phosphate (MUP) as substrate analogues for PMEase in 7 natural ecosystem soils and 8 agricultural top soils with contrasting C contents (8.0-414 g kg⁻¹ C) and pH (3.0-7.5). PMEase activities obtained with pNPP (0.05-5 μmol g⁻¹ h⁻¹) were significantly less than activities obtained with MUP (0.9-13 μmol g⁻¹ h⁻¹), especially in soils with a high organic matter content (>130 g kg⁻¹). Only PMEase activities assayed with MUP correlated significantly with total C and total N (r=0.7, P<0.01 all), and pH (r=−0.71, P<0.01). PMEase activities obtained with the two substrate analogues were correlated when expressed on a C-content basis (r=0.8, P<0.001), but not when expressed on an oven-dry soil weight basis. This indicated that interference by organic matter is related to the quantity rather than to the quality of organic matter. Overall, assaying with MUP was more sensitive compared to assaying with pNPP, particularly in the case of high organic and acid soils.     

Chemical composition, or quality, of agroforestry residues influences N2O emissions after their addition to soil

Emissions of N₂O were measured following addition of ¹⁵N-labelled (2.6-4.7 atom% excess ¹⁵N) agroforestry residues (Sesbania sesban, mixed Sesbania/Macroptilium atropurpureum, Crotalaria grahamiana and Calliandra calothyrsus) to a Kenyan oxisol at a rate of 100 mg N kg soil⁻¹ under controlled environment conditions. Emissions were increased following addition of residues, with 22.6 mg N m⁻² (124.4 mg N m⁻² kg biomass⁻¹; 1.1 mg ¹⁵N m⁻²; 1.03% of ¹⁵N applied) emitted as N₂O over 29 d after addition of both Sesbania and Macroptilium residues in the mixed treatment. Fluxes of N₂O were positively correlated with CO₂ fluxes, and N₂O emissions and available soil N were negatively correlated with residue lignin content (r=−0.49;P<0.05), polyphenol content (r=−0.94;P<0.05), protein binding capacity (r=−0.92;P<0.05) and with (lignin+polyphenol)-to-N ratio (r=−0.55;P<0.05). Lower emission (13.6 mg N m⁻² over 29 d; 94.5 mg N m⁻² kg biomass⁻¹; 0.6 mg ¹⁵N m⁻²; 0.29% of ¹⁵N applied) after addition of Calliandra residue was attributed to the high polyphenol content (7.4%) and high polyphenol protein binding capacity (383 μg BSA mg plant⁻¹) of this residue binding to plant protein and reducing its availability for microbial attack, despite the residue having a N content of 2.9%. Our results indicate that residue chemical composition, or quality, needs to be considered when proposing mitigation strategies to reduce N₂O emissions from systems relying on incorporation of plant biomass, e.g. improved-fallow agroforestry systems, and that this consideration should extend beyond the C-to-N ratio of the residue to include polyphenol content and their protein binding capacity.     

Soil microbial biomass along a hydrologic gradient in a subsiding coastal bottomland forest: Implications for future subsidence and sea-level rise

Soil microbial biomass was analyzed in a rapidly subsiding coastal bottomland forest at three sites along an elevation change of ∼1 m and an associated hydrologic gradient of 400 m from rare (ridge site), to occasional (intermediate site), to frequent flooding (swamp site). Given the current rate of relative sea-level rise in this area (subsidence+global mean sea-level rise ∼1.2 cm y⁻¹), this gradient may represent a space-for-time substitution for about one century of future sea-level rise. Along the hydrologic gradient, microbial biomass carbon (MBC) in the upper 20 cm of mineral soil was 157±26 (ridge), 134±14 (intermediate), and 90±20 (swamp) g C m⁻². MBC was positively correlated with soil organic matter (r²=0.76, P=0.002) and the ratio of MBC to soil organic C ranged from 0.008 to 0.017 depending on soil depth and site. Generally, MBC decreased with increasing soil moisture from the ridge to the swamp site. Although MBC was statistically similar overall in the ridge and intermediate sites, the intermediate site had the largest fraction (45%) at 0-5 cm, whereas the ridge site had the largest fraction (40%) below 10-20 cm. Based on a space-for-time substitution model using non-linear regression analysis, we predict that MBC in the upper 20 cm of soil is likely to decrease by about one-third along the transect over the next century as a result of subsidence and sea-level rise.     

Long-term effects of metal-containing farmyard manure and sewage sludge on soil organic matter in a fluvisol

Our aim was to establish the long-term effects of repeated applications after 20 y of organic amendments (farmyard manure at 10 t ha⁻¹ y⁻¹, and urban sewage sludge at two different rates, 10 t ha⁻¹ y⁻¹ and 100 t ha⁻¹ every 2 y) on the quality of a sandy and poorly buffered soil (Fluvisol, pH 6). Chemical characteristics and biodegradability of the labile organic matter, which is mainly derived from microbial biomass and biodegradation products of organic residues, were chosen as indicators for soil quality. The organic C content had reached a maximal value (30.6 g C kg⁻¹ in the 100 t sludge-treated soil), i.e. about 2.5 times that in the control. Six years after the last application, the organic C content and the microbial biomass content remained higher in sludge-treated soils than in the control. In contrast, the proportion of labile organic matter was significantly lower in sludge-treated soils than in manure-treated and control soils. The labile organic matter of sludge extracts appeared less humified than that of manure-treated and control soils.     

The effect of lime and compost amendments on the potential for the revegetation of metal-polluted, acidic soils

The revegetation of soils affected by the historic pollution of an industrial complex in central Chile was studied. Spontaneous and assisted revegetation and changes in the physicochemical properties of the soils were evaluated in field plots that were amended with lime or lime + compost. Lime had no effect on plant productivity in comparison with the control, whereas the incorporation of lime + compost into the soil increased the plant cover and aboveground biomass. The application of lime + compost increased the plant productivity of Chrysanthemum coronarium (a species sensitive to the atmospheric emissions from the industrial complex), thus showing effective in situ stabilization of soil contaminants. Regression analyses suggested that the plant response was due to the increase in the soil organic matter content rather than to the increase in the soil pH. The aboveground biomass and plant cover did not differ under the spontaneous and assisted revegetation regimes. The native soil seed bank was sufficient for attainment of the proper plant cover and biomass production after the application of the soil amendments. Although the pCu²⁺ in the amended soils was 4 orders of magnitude higher than in the unamended control, the shoot Cu concentration was similar among most of the combinations of plant species and amendments.     

Influence of earthworm activity on aggregate-associated carbon and nitrogen dynamics differs with agroecosystem management

Earthworms are known to be important regulators of soil structure and soil organic matter (SOM) dynamics, however, quantifying their influence on carbon (C) and nitrogen (N) stabilization in agroecosystems remains a pertinent task. We manipulated population densities of the earthworm Aporrectodea rosea in three maize-tomato cropping systems [conventional (i.e., mineral fertilizer), organic (i.e., composted manure and legume cover crop), and an intermediate low-input system (i.e., alternating years of legume cover crop and mineral fertilizer)] to examine their influence on C and N incorporation into soil aggregates. Two treatments, no-earthworm versus the addition of five A. rosea adults, were established in paired microcosms using electro-shocking. A ¹³C and ¹⁵N labeled cover crop was incorporated into the soil of the organic and low-input systems, while ¹⁵N mineral fertilizer was applied in the conventional system. Soil samples were collected during the growing season and wet-sieved to obtain three aggregate size classes: macroaggregates (>250 μm), microaggregates (53-250 μm) and silt and clay fraction (<53 μm). Macroaggregates were further separated into coarse particulate organic matter (cPOM), microaggregates and the silt and clay fraction. Total C, ¹³C, total N and ¹⁵N were measured for all fractions and the bulk soil. Significant earthworm influences were restricted to the low-input and conventional systems on the final sampling date. In the low-input system, earthworms increased the incorporation of new C into microaggregates within macroaggregates by 35% (2.8 g m⁻² increase; P=0.03), compared to the no-earthworm treatment. Within this same cropping system, earthworms increased new N in the cPOM and the silt and clay fractions within macroaggregates, by 49% (0.21 g m⁻²; P<0.01) and 38% (0.19 g m⁻²; P=0.02), respectively. In the conventional system, earthworms appeared to decrease the incorporation of new N into free microaggregates and macroaggregates by 49% (1.38 g m⁻²; P=0.04) and 41% (0.51 g m⁻²; P=0.057), respectively. These results indicate that earthworms can play an important role in C and N dynamics and that agroecosystem management greatly influences the magnitude and direction of their effect.     

Application of near infrared reflectance (NIR) and fluorescence spectroscopy to analysis of microbiological and chemical properties of arctic soil

Applicability of near infrared reflectance (NIR) and fluorescence spectroscopic techniques was tested on highly organic arctic soil. Soil samples were obtained at a long-term climate change manipulation experiment at a subarctic fell heath in Abisko, northern Sweden. The ecosystem had been exposed to treatments simulating increasing temperature (open-top greenhouses), higher nutrient availability (NPK fertilization) and increasing cloudiness (shading cloths) for 15 years prior to the sampling. For each of the 72 samples from the 0 to 5 cm soil depth and 36 samples from the 5 to 10 cm depth, the wavelength range of 400-2500 nm (visible and near infrared spectrum) was scanned with a NIR spectrophotometer and fluorescence excitation-emission matrices (EEMs) were recorded with a spectrofluorometer.Principal component analyses of the visible, NIR and fluorescence spectra clearly separated the treatments, which indicates that the chemical composition of the soil and its spectral properties had changed during the climate change simulation. Similarly to the results from the conventional analyses of soil chemical and microbiological properties, fertilization treatment posed strongest effects on the spectra. Partial least-squares (PLS) regression methods with cross-validation were used to analyse relationships between the spectroscopic data and the chemical and microbiological data derived from the conventional analyses. The fluorescence EEMs of the dried solid soil samples were moderately related to soil ergosterol content (correlation coefficient r=0.84), bacterial activity analysed by leucine incorporation technique (r=0.78) and total phospholipid fatty acid (PLFA) content (r=0.74), but in general fluorescence provided inferior predictions of the chemical and microbiological variables to NIR. NIR was highly related to soil organic matter content (r>0.9) and showed promising predictions of soil ergosterol content (r>0.9), microbial biomass C, microbial biomass P, and total PLFA contents (r=0.78-0.79).These results suggest that especially NIR could be used to predict soil organic matter and fungal biomass. Since it is rapid and inexpensive, and requires little sample mass, it could be used as a ‘quick and dirty’ technique to estimate progression of the treatment responses in long-term ecosystem experiments, where extensive soil sampling is to be avoided.     

Methane flux and regulatory variables in soils of three equal-aged Japanese cypress (Chamaecyparis obtusa) forests in central Japan

To compare factors that control methane flux in forest soils, we studied three equal-aged Japanese cypress (Chamaecyparis obtusa) forests in Chubu district, central Japan. The three sites are located at different altitudes: 630 m (SET), 1010 m (INB), and 1350 m (OSK). Methane was absorbed at every site. The highest uptake rate was observed in the middle-altitude soil (INB, 5.89 mg CH₄ m⁻² d⁻¹), which was the only site where methane uptake rate was correlated with air and soil surface temperatures. Methane flux in the field was not correlated with water content, inorganic N content, or water-soluble organic carbon. C/N ratio was correlated with methane flux (r=0.64,p<0.001). The results suggest that some organic inhibitors might be produced through decomposition of organic matter. There was a negative correlation between methane uptake rate and water-soluble Al (r=−0.63,p<0.001). Inhibition of methane consumption by 1 and 5 mM Al solutions was observed in laboratory incubation. This result suggests that water-soluble Al may be a factor controlling methane uptake. Multiple regression with a backward-elimination procedure identified three variables that were significantly associated with methane flux in the field (p<0.05): air temperature, C/N ratio, and the concentration of water-soluble Al.     

Field characterization of olive (Olea europaea L.) tree crown architecture using terrestrial laser scanning data

Since the introduction of Terrestrial Laser Scanning (TLS) instruments, there now exists a means of rapidly digitizing intricate structural details of vegetation canopies using Light Detection and Ranging (LiDAR) technology. In this investigation, Intelligent Laser Ranging and Imaging System (ILRIS-3D) data was acquired of individual tree crowns at olive (Olea europaea L.) plantations in Córdoba, Spain. In addition to conventional tripod-mounted ILRIS-3D scans, the unit was mounted on a platform (12 m above ground) to provide nadir (top-down) observations of the olive crowns. 24 structurally variable olive trees were selected for in-depth analysis. From the observed 3D laser pulse returns, quantitative retrievals of tree crown structure and foliage assemblage were obtained. Robust methodologies were developed to characterize diagnostic architectural parameters, such as tree height (r² = 0.97, rmse = 0.21 m), crown width (r² = 0.97, rmse = 0.13 m), crown height (r² = 0.86, rmse = 0.14 m), crown volume (r² = 0.99, rmse = 2.6 m³), and Plant Area Index (PAI) (r² = 0.76, rmse = 0.26 m²/m²). With the development of such LiDAR-based methodologies to describe vegetation architecture, the forestry, agriculture, and remote sensing communities are now faced with the possibility of replacing current labour-intensive inventory practices with, modern TLS systems. This research demonstrates that TLS systems can potentially be the new observational tool and benchmark for precise characterization of vegetation architecture for improved agricultural monitoring and management.     

Sulphur immobilization and arylsulphatase activity in two calcareous arable and fallow soils as affected by glucose additions

In this study we examined the effects of glucose-C on the activities of fungi and bacteria determined by the method of substrate-induced respiration (SIR) in combination with the selective inhibition technique, the immobilized-S and the arylsulphatase (ARS) activity in two calcareous arable and fallow soils. The amounts of glucose-C were added at six doses: 0, 125, 250, 500, 750 and 1000 mg kg^− 1 soil to the soils and then incubated for one week with a Na₂³⁵SO₄ solution (518.9 kBq kg^− 1 dry soil and 20 mg S kg^− 1 dry soil) prior to analysis. At the highest dose of 1000 mg kg^− 1 soil, fungal activity increased by 59.1% (of the dose 0) versus 45.5% for bacterial activity in the arable soil, while in the fallow soil the increases were more marked and corresponded to 69.9% and 71.1%, respectively. Largest increase in immobilized-S was observed in the arable soil (300.7%) compared with the fallow soil (153.1%). In contrast, the ARS activity increased by 16.4% in the arable soil versus 32.1% in the fallow soil. These results indicate that glucose proportionately affected more the intensities of immobilized-S than those of ARS. Strong positive correlation coefficients were found between fungal activities and immobilized-S in the arable soil (r = 0.96, P < 0.01) and in the fallow soil (r = 0.98, P < 0.001). However, non-significant correlations were observed between fungal activities and ARS in both studied soils. As to bacterial activities, positive significant correlation coefficients were found with immobilized-S in the arable soil (r = 0.95, P < 0.01) and in the fallow soil (r = 0.90, P < 0.05) as well as with ARS activities in the arable soil (r = 0.83, P < 0.05) and in the fallow soil (r = 0.97, P < 0.01). Overall, we also found positive and significant correlation coefficients of immobilized-S with ARS activities in the arable soil (r = 0.86, P < 0.05) and in the fallow soil (r = 0.83, P < 0.05). Accordingly, the results showed a presence of extracellular arylsulphatase activity of 38.7 mg p-nitrophenol kg^− 1 soil h^− 1 in the arable soil and of 63.5 mg p-nitrophenol kg^− 1 soil h^− 1 in the fallow soil. It was concluded that fallowing maintained larger activities of fungi, bacteria and arylsulphatase compared with the arable soil.     

Earthworms change the distribution and availability of phosphorous in organic substrates

In laboratory controlled soil microcosms, the distribution and availability of phosphorous (P) were determined in the surface-casts and the burrows-linings of the anecic earthworm L. terrestris and were compared with non-ingested soil. To simulate more realistic earthworm community conditions, a combination of L. terrestris plus the endogeic A. caliginosa was tested. For a 2-month period, the earthworms were given two organic food substrates: rye-grass littered onto the soil surface and sewage sludge mixed with soil. The following treatments were designed: (i) soil alone (S), (ii) soil and sewage sludge (SS), soil and rye-grass litter (SL), and (iv) soil, litter and sludge (SSL). Analyses were performed for P contents (total, available and organic), organic matter content (organic carbon, C_org and total nitrogen, N_tot) and the two acid and alkaline phosphatase activities (AcPA and AkPA). Earthworms enhanced AcPA and were also responsible for additional AkPA in soil. The two AcPA and AkPA increased not only in surface-casts but also in burrows-linings that paralleled with the decrease of organic P in SL and SSL treatments. The stimulation of AcPA began quickly and declined rapidly in casts (from 19 to 8 μmol phenol g⁻¹ dry wt h⁻¹, respectively at week 2 and 8 in the SL treatment) but it was initiated later and maintained at a high level for longer in burrows (more than 10 μmol phenol g⁻¹ dry wt h⁻¹ at week 8 in the SL treatment). Significant positive correlations were found between the AkPA activities and N_tot contents (r=0.95, p=0.001) and to a lesser extend with C_org contents (r=0.76, p=0.05) in casts from the SL treatment, while AcPA significantly correlated with N_tot (r=0.91, p=0.004) but not with C_org (r=0.72, p=0.06). P availability was always highest in casts. However, the available P contents decreased sharply over time in casts and were still low in burrow-linings, suggesting that a large part of inorganic P produced was rapidly immobilized for the microbial growth. Total P content was unchanged except in the SL treatment in which it increased in casts and burrows (ca. 725 μg g⁻¹, at week 4). Organic P was first the highest in casts and then decreased over time (from 168 at week 1 to 140 μg g⁻¹ at week 8 in the SL treatment). This study illustrates that earthworms facilitate P transfer downward increasing a P patchy distribution in the soil, and significantly change the biogeochemical status of P (availability, organic phosphorous pool, AcPA activities) in certain hot spots such as casts and burrow-linings.     

Integrated diurnal soil respiration model during growing season of a typical temperate steppe: Effects of temperature, soil water content and biomass production

Soil respiration was measured with the enclosed chamber method in an ungrazed Leymus chinensis steppe during the growing seasons of 2001 and 2002. Soil respiration rate (R_S) was significantly influenced by air temperature (T) at the diurnal scale, and could be described by Van't Hoff's equation (R_S = R₁₀ exp(β(T − 10))). At the seasonal scale, the normalized soil respiration rate at 10 °C (R₁₀) was mainly controlled by soil water content (R² = 0.717, P < 0.001), while the sensitivity of soil respiration to temperature (Q₁₀) was partially affected by absolute growth rate (R² = 0.482, P = 0.004). Thus, soil respiration could be described as R_S = (20.015W − 84.085) (0.103AGR + 1.786)^(T−10)/10 during the growing seasons, integrating soil water content (W) and absolute growth rate (AGR) into the temperature-dependent soil respiration equation. It was validated by the observed soil respiration rates in this study (R² = 0.890, P < 0.001) and observations from near-field experiment (R² = 0.687, P = 0.011). It implied that accurately evaluating annual soil respiration should include the effects of plant biomass production and other abiotic factors besides air temperature.     

The effects of heat stress, predation risk and parental investment on Malaysian plover nest return times following a human disturbance

Waders leave nests and conduct distractive displays when approached by people. The time taken for waders to return to nests depends on numerous factors that affect the costs and benefits of incubation and anti-predator behavior. Understanding this trade-off may help assess the reproductive consequences of different nest return times and identify variables to consider in breeding disturbance studies. We subjected 73 Malaysian plover (Charadrius peronii) nests to standardized human disturbances and an analysis of covariance was used to determine how weather, time of day, embryonic age, weeks into breeding season and nest attendance (proportion of time adults incubated nests) influence nest return times. Egg temperatures were estimated using a regression model that predicted the temperature inside unshaded eggs from air temperature, cloud cover and time of day (r² = 0.88). We assessed the relationship between nest return times and hatch success. Plovers returned to nests faster at higher modeled egg temperature (P = 0.010), in the morning (P = 0.003), if they had younger clutches (P = 0.038), and if they had high nest attendance prior to the disturbance (P = 0.015). Pairs that returned to nests faster had lower hatch success (P = 0.021). This may be because pairs that spend more time distracting humans may also do so for predators. These results suggest that short nest return times may not indicate low fitness costs of disturbance. The thermal and predation environment in addition to nest return times should be taken into account when assessing the deleterious effects of human disturbance.     

Hot-water extractable carbon in soils: a sensitive measurement for determining impacts of fertilisation, grazing and cultivation

Using pre-established trial sites on allophanic soils, we investigated the impacts of long to medium-term pastoral management practices, such as fertilisation and grazing intensity, on a range of soil biological and biochemical properties; hot water-extractable C (HWC), water-soluble C (WSC), hot-water extractable total carbohydrates, microbial biomass-C and N and mineralisable N. These properties were examined for their usefulness as soil quality indicators responding to changes in the rhizosphere caused by management practices. Adjacent cropping, market garden and native bush sites located on similar soil types were included to determine the changes in soil biological and biochemical properties resulting from changes in land use. The seasonal variability of HWC and its relationship with other labile fractions of soil organic matter was also examined.Microbial biomass-C, mineralisable N and extractable total carbohydrates showed promise in differentiating treatment and land use effects. However, HWC was one of the most sensitive and consistent indicators examined at 52 different sites. The impact of different land uses on the amounts of HWC in the same soil type was far greater than that was observed for the soil organic carbon. The average values of HWC for soil under different land use were: native (4000 μg C g⁻¹ soil), sheep/beef pastures (3400), dairy pastures (3000), cropping (1000) and market gardening soils (850). HWC was also sensitive to differences within an ecosystem, e.g. effects of grazing intensities and effects of N or P fertilisers on pastures. The sheep and beef/cattle grazed pastures always had higher amounts of HWC than the intensively grazed dairy pastures. Nitrogen fertiliser application (200 and 400 kg N ha⁻¹ yr⁻¹) over the previous 5 yr had significant (P<0.001) negative impacts on HWC and other soil microbial properties. In contrast, long-term application of P fertilisers had a significant (P<0.001) positive effect on the HWC levels in pastoral soils. In the case of long-term P trials, HWC increased even though no increase in the total soil carbon pool was detected.HWC was positively correlated with soil microbial biomass-C (R²=0.84), microbial nitrogen (R²=0.72), mineralisable N (R²=0.86), and total carbohydrates (R²=0.88). All these correlations were significant at P<0.001 level of significance. The HWC was also positively correlated with WSC and total organic C. However, these correlations were poorer than those found for other soil parameters. Most of these measurements have been actively promoted as key indicators of soil quality. Given the strong correlations between HWC and other biochemical measurements, HWC could be used as an integrated measure of soil quality. When HWC is extracted, other pools of labile nutrients are also extracted along with C. Therefore it is suggested that decline in HWC would also indicate a decline in other labile organic pools of nutrients such as nitrogen, sulphur and phosphorus. About 40-50% of the C in the HWC extract was present as carbohydrates.     

Enzymatic activities in constructed wetlands and di-n-butyl phthalate (DBP) biodegradation

The bioaccumulation of phthalate acid esters (PAEs) from industrial products and their mutagenic action has been suggested to be a potential threat to human health. The effects of the most frequently identified PAE, Di-n-butyl phthalate (DBP), and its biodegradation, were examined by comparison of two small scale plots (SSP) of integrated vertical-flow constructed wetlands. The influent DBP concentration was 9.84 mg l⁻¹ in the treatment plot and the control plot received no DBP. Soil enzymatic activities of dehydrogenase, catalase, protease, phosphatase, urease, cellulase, β-glucosidase, were measured in the two SSP after DBP application for 1 month and 2 months, and 1 month after the final application. Both treatment and control had significantly higher enzyme activity in the surface soil than in the subsurface soil (P<0.001) and greater enzyme activity in the down-flow chamber than in the up-flow chamber (P<0.05). In the constructed wetlands, DBP enhanced the activities of dehydrogenase, catalase, protease, phosphatase and inhibited the activities of urease, cellulase and β-glucosidase. However, urease, cellulase, β-glucosidase activities were restored 1 month following the final DBP addition. Degradation of DBP was greater in the surface soil and was reduced in sterile soil, indicating that this process may be mediated by aerobic microorgansims. DBP degradation fitted a first-order model, and the kinetic equation showed that the rate constant was 0.50 and 0.17 d⁻¹, the half-life was 1.39 and 4.02 d, and the r² was 0.99 and 0.98, in surface and subsurface soil, respectively. These results indicate that constructed wetlands are able to biodegrade organic PAEs such as DBP.     

Adenylates as an estimate of microbial biomass C in different soil groups

Adenylate (i.e. adenosine tri- (ATP), di- (ADP) and monophosphates (AMP)) and microbial biomass C data were collected over a wide range of sites including forest floor layers and forest, grassland and arable soils. Microbial biomass C was measured by fumigation extraction and adenylates after alkaline Na₃PO₄/DMSO/EDTA extraction and HPLC detection. Our aims were (1) to test whether the sum of adenylates is a better estimate for microbial biomass than the determination of ATP, (2) to compare our conversion values with those proposed by others, and (3) to analyse whether soil properties or land use form affect the relationships between ATP, adenylates and microbial biomass C. A close relationship was found between microbial biomass C and ATP (r=0.96), but also with the sum of adenylates (r=0.96) within all appropriately conditioned soil samples (n=112). In the mineral soil (n=98), the geometric means of the ATP-to-microbial biomass C ratio and the adenylates-to-microbial biomass C ratio were 7.4 and 11.4 μmol g⁻¹, respectively. The mean ratios did not differ significantly between the different texture classes and land use forms. In the forest floor, the ATP-to-microbial biomass C ratio and the adenylates-to-microbial biomass C ratio were both roughly two-thirds of those of the mineral soil. The average adenylate energy charge (AEC) of all soil samples was 0.79 and showed a strong negative relationship with the soil pH (r=−0.69). However, the AEC is presumably only indirectly affected by the soil pH.     

Fluorescein diacetate hydrolysis,respiration and microbial biomass in freshly amended soils

The hydrolysis of the fluorescein diacetate (FDA), related to several soil hydrolases, has been utilised to estimate the potential microbial activity of soil freshly amended with a wide range of organic amendments and compared to the size and activity of soil microflora, measured by the microbial biomass C (B _C) and CO₂ evolution, respectively. Three different composting mixtures at different phases of the composting process were added to a semi-arid soil and incubated for 2 months under laboratory conditions. The addition of the organic amendment immediately increased B _C and both measures of microbial activity (FDA and CO₂ evolution). Highly significant correlations were found between FDA hydrolysis and B _C for soil amended with the three composting mixtures (r = 0.81–0.96; P < 0.01), regardless of the origin, composition and degree of stability of the organic amendments. FDA hydrolysis, conversely to CO₂ evolution, was unaffected by the disturbance caused by the soil amendment, indicating that the two parameters probably reflect different aspects of soil microbial activity. FDA hydrolysis could serve as an alternative estimation of the microbial biomass in freshly amended soils, despite the disturbance caused by the exogenous organic matter.     

Variation in methanotrophic bacterial population along an altitude gradient at two slopes in tropical dry deciduous forest

Soil samples were collected from Panchamarhi dry deciduous forest in Satpuda Biosphere Reserve, India to determine the effect of hill slopes and altitude on the population size of methanotrophic bacteria. Population size, in range of 4×10⁵-3.6×10⁷ g⁻¹ dry soil, was negatively correlated with altitude and increased exponentially (r²=0.97, P<0.001) at steep slope (60°) while logarithmically (r²=0.97, P<0.001) at low slope (45°). Soil organic C, total N, and soil moisture increased while C/N ratio and temperature decreased down the hill slope. The results indicated that nutritional status of the soil across the slopes determines the methanotrophic bacterial population size.     

Electron donors and acceptors influence anaerobic soil organic matter mineralization in tidal marshes

Anaerobic decomposition in wetland soils is carried out by several interacting microbial processes that influence carbon storage and greenhouse gas emissions. To understand the role of wetlands in the global carbon cycle, it is critical to understand how differences in both electron donor (i.e., organic carbon) and terminal electron acceptor (TEA) availability influence anaerobic mineralization of soil organic matter. In this study we manipulated electron donors and acceptors to examine how these factors influence total rates of carbon mineralization and the pathways of microbial respiration (e.g., sulfate reduction versus methanogenesis). Using a field-based reciprocal transplant of soils from brackish and freshwater tidal marshes, in conjunction with laboratory amendments of TEAs, we examined how rates of organic carbon mineralization changed when soils with different carbon contents were exposed to different TEAs. Total mineralization (the sum of CO₂ + CH₄ produced) on a per gram soil basis was greater in the brackish marsh soils, which had higher soil organic matter content; however, on a per gram carbon basis, mineralization was greater in the freshwater soils, suggesting that the quality of carbon inputs from the freshwater plants was higher. Overall anaerobic metabolism was higher for both soil types incubated at the brackish site where SO₄²⁻ was the dominant TEA. When soils were amended with TEAs in the laboratory, more thermodynamically favorable respiration pathways typically resulted in greater organic matter mineralization (Fe(III) respiration > SO₄²⁻ reduction > methanogenesis). These results suggest that both electron donors and acceptors play important roles in regulating anaerobic microbial mineralization of soil organic matter.     

Structure and function of the soil microbial community in a long-term fertilizer experiment

The effect of organic and inorganic fertiliser amendments is often studied shortly after addition of a single dose to the soil but less is known about the long-term effects of amendments. We conducted a study to determine the effects of long-term addition of organic and inorganic fertiliser amendments at low rates on soil chemical and biological properties. Surface soil samples were taken from an experimental field site near Cologne, Germany in summer 2000. At this site, five different treatments were established in 1969: mineral fertiliser (NPK), crop residues removed (mineral only); mineral fertiliser with crop residues; manure 5.2 t ha⁻¹ yr⁻¹; sewage sludge 7.6 t ha⁻¹ yr⁻¹ or straw 4.0 t ha⁻¹ yr⁻¹ with 10 kg N as CaCN₂ t straw⁻¹. The organic amendments increased the C_org content of the soil but had no significant effect on the dissolved organic C (DOC) content. The C/N ratio was highest in the straw treatment and lowest in the mineral only treatment. Of the enzymes studied, only protease activity was affected by the different amendments. It was highest after sewage amendment and lowest in the mineral only treatment. The ratios of Gram+ to Gram− bacteria and of bacteria to fungi, as determined by signature phospholipid fatty acids, were higher in the organic treatments than in the inorganic treatments. The community structure of bacteria and eukaryotic microorganisms was assessed by denaturing gradient gel electrophoresis (DGGE) and redundancy discriminate analyses of the DGGE banding patterns. While the bacterial community structure was affected by the treatments this was not the case for the eukaryotes. Bacterial and eukaryotic community structures were significantly affected by C_org content and C/N ratio.