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1.
Frdrick G. Sunstrum Wubishet A. Bekele Charlene P. Wight Weikai Yan Yuanhong Chen Nicholas A. Tinker 《Plant Breeding》2019,138(1):82-94
We developed 178 recombinant inbred lines from a southern‐by‐spring oat population designated as “TxH.” These lines were genotyped to generate a high‐quality linkage map that resolved 6,902 markers into 21 linkage groups that matched closely with the latest hexaploid oat consensus map. Three major quantitative trait loci (QTLs) affecting heading date were found in locations that are consistent with known QTLs and candidate genes, and two other QTLs affecting heading date were found in novel locations. Five QTLs affecting plant height were found. Both sets of QTLs are responsible for transgressive segregation observed for these two traits. Four QTLs affecting resistance to crown rust, caused by the pathogen Puccinia coronata f. sp. avenae, were identified. Two of these QTLs are consistent with known clusters of rust resistance genes, while two may represent new locations of novel rust resistance genes. A complete set of SNP sequences suitable for generating markers for molecular selection is provided. 相似文献
2.
Quantitative trait loci for agronomic traits in soybean 总被引:2,自引:0,他引:2
There continues to be improvement in seed yields of soybean by conventional breeding, but molecular techniques may provide faster genetic gains. The objective of this study was to identify quantitative trait loci (QTL) associated with the agronomic traits seed yield, lodging, plant height, seed filling period and plant maturity in soybean. To achieve this objective, 101 F6‐derived recombinant inbred lines (RIL) from a population developed from a cross of N87‐984‐16 × TN93‐99 were used. Experiments were conducted in six environments during 2002–2003. Heritability estimates on an entry mean basis from data combined across environments ranged from 0.12 to 0.65 for seed yield and seed filling period, respectively. Composite interval mapping detected one QTL for yield (near Satt076), two for lodging (near Satt225 and Satt593) and four for maturity (near Satt263, Satt292, Satt293 and Satt591) in this population. Additional environmentally sensitive QTL for these traits, and for seed filling period and plant height are also reported. The QTL associated with agronomic traits that we report and the recently released germplasm (PI 636460) from this population may be useful in soybean breeding programmes. 相似文献
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Ankit Malik Aruna Kumar Ranjith Kumar Ellur Subbaiyan Gopala Krishnan Kunnummal Kurungara Vinod Deepshikha Dixit Mariappan Nagarajan Prolay Kumar Bhowmick Haritha Bollinedi Nagendra Kumar Singh Ashok Kumar Singh 《Plant Breeding》2023,142(3):327-337
Increasing crop productivity is one of the prime goals of crop breeding research. Rice grain yield is a complex quantitative trait governed by polygenes. Although several QTLs governing grain yield traits have been reported and limited attempts have been made to map QTLs for grain yield parameters in Basmati rice. A population from the cross Sonasal and Pusa Basmati 1121 comprising 352 RILs was generated through the single seed descent method. A total of 12 QTLs governing yield and yield-related traits were mapped on six chromosomes, namely, 1, 2, 3, 7, 8 and 9, of which five QTLs were novel. We identified a novel and robust epistatic QTL (qPH1.1 and qPL1.1) governing plant height and panicle length, flanked by the markers RM5336-RM1 on chromosome 1. The gene encoding brassinosteroid insensitive 1-associated receptor kinase 1 precursor is the putative candidate gene underlying this epistatic QTL. Another novel QTL, qNT3.1, governing tiller number was bracketed to a region of .77 Mb between the markers RM15247 and RM15281 on chromosome 3. Of the 57 annotated gene models, Os03g0437600 encoding alpha/beta-fold hydrolase, a homologous to AtKai2 is a putative candidate gene underlying the novel QTL qNT3.1. The other QTLs such as qDFF1.1 governing days to 50% flowering co-localizes with the gene Ghd7, QTL for plant height qPH1.2 co-localizes with the gene sd1, the QTLs for panicle length co-localizes with FUWA and DEP2, the QTL for tiller number co-localizes with OsRLCK57 and QTLs for thousand-grain weight co-localize with the major gene GS3. The QTLs identified in the current study can be effectively used in marker-assisted selection for developing Basmati rice varieties with a higher yield. 相似文献
5.
Although the Advanced Backcross strategy has proven very useful for QTL detection in tomato, it has been used mainly in identifying
QTL for agronomic traits such as yield, color, etc. Tomato flavor is an important quality characteristic, yet it has been
difficult to assess flavor or traits that affect it. In this study the AB-QTL strategy was applied to four advanced backcross
populations to identify QTL for biochemical properties that may contribute to the flavor of processed tomatoes, such as sugars
and organic acids. A total of 222 QTL were identified for 15 traits, including flavor as assessed by a taste panel. Correlations
of certain biochemicals with flavor and possible methods of assessing and improving flavor are discussed. In particular, QTL
with very significant effects associated with the ratio of sugars/glutamic acid, a trait highly correlated with improved flavor,
have been identified as good targets for future work in improving the flavor of tomatoes.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
6.
Hamidreza Dargahi Patcharin Tanya Prakit Somta Jun Abe Peerasak Srinives 《Breeding Science》2014,64(4):282-290
Development of soybean cultivars with high seed yield is a major focus in soybean breeding programs. This study was conducted to identify genetic loci associated with seed yield-related traits in soybean and also to clarify consistency of the detected QTLs with QTLs found by previous researchers. A population of 135 F2:3 lines was developed from a cross between a vegetable soybean line (MJ0004-6) and a landrace cultivar from Myanmar (). They were evaluated in the experimental field of Kasetsart University, Kamphaeng Saen, Nakhon Pathom, Thailand in a randomized complete block design with two replications each in 2011 and 2012 growing seasons. The two parents exhibited contrasting characteristics for most of the traits that were mapped. Analysis of variance showed that the main effects of genotype and environment (year) were significant for all studied traits. Genotype by environment interaction was also highly significant for all the traits. The population was genotyped by 149 polymorphic SSR markers and the genetic map consisted of 129 SSR loci which converged into 38 linkage groups covering 1156 cM of soybean genome. There were 10 QTLs significantly associated with seed yield-related traits across two seasons with single QTLs explaining between 5.0% to 21.9% of the phenotypic variation. Three of these QTLs were detected in both years for days to flowering, days to maturity and 100 seed weight. Most of the detected QTLs in our research were consistent with earlier QTLs reported by previous researchers. However, four novel QTLs including SF1, SF2 and SF3 on linkage groups L and N for seed filling period and PN1 on linkage group D1b for pod number were identified in the present study. R18500相似文献
7.
Summary Improved grain yields in lines of oats from matings of Avena sativa x A. sterilis were found to be due to increased plant growth rate. Growth rates of oats were quantitatively inherited, with the minimum number of effective factor pairs segregating in the interspecific matings ranging from 3 to 9. Heritability values for this trait averaged 0.4. Growth rate was highly and positively correlated with bundle weight, straw yield, grain yield, and unit straw weight, but it was uncorrelated with heading date and harvest index. Correlations with plant height were low. Thus, it should be possible for oat breeders to combine the high growth rates from A. sterilis with any combination of agronomic traits.Journal Paper No. J-8608 of the Iowa Agriculture and Home Economics Experiment Station, Ames, Iowa 50011. Project 1752. Supported in part by a grant from the Graduate College.Hirosaki University, Hirosaki, Japan (formerly Visiting Scientist at Iowa State University). 相似文献
8.
Long-term selection experiments provide germplasm to study the effects of selection in a closed population. Recurrent selection
to enhance grain yield in oat has been ongoing at the University of Minnesota since 1968. The objectives of this study were:
(i) estimate the GCA and SCA effects for three agronomic traits in the seventh cycle of selection, (ii) assess the effect
of the current methods of selection on parental contribution and unselected traits, and (iii) determine the direct and indirect
responses to seven cycles of recurrent selection for grain yield. Progeny of the Cycle 6 parents and parents for Cycles 0
through 7 were grown in two separate tests. Grain yield, heading date and plant height were evaluated in each test. Grain
yield was increased by 21.7% after seven cycles of selection. Evaluation of Cycle 6 progeny showed that GCA effects were significant
for all three traits studied, and SCA effects were significant only for grain yield. Four Cycle 6 parents did not have any
progeny selected as Cycle 7 parents. Results from this study indicate that long term recurrent selection has continued to
increase grain yield. Alternative selection strategies may be necessary to maintain the genetic variability in this population,
particularly when improvement of secondary traits is required.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
9.
M. O. Humphreys 《Euphytica》1992,59(2-3):141-150
Summary Inbred lines possessing different genotypes at three isozyme loci, PGI-2, GOT-3 and ACP-1, were produced by two generations of selfing from two contrasting cultivars of perennial ryegrass. Four separate F2 populations were obtained by selfing or crossing F1 plants from crosses between cultivar inbred lines. F2 plants were scored for genotype at the three isozyme loci and for eight agronomic traits. The three isozyme loci showed independent segregation confirming that they belonged to separate linkage groups. A consistent association was observed between water soluble carbohydrate content and genotype at the PGI-2 locus. Some association was also detected between genotype at the ACP-1 locus and heading date. The relevance of these observations to ryegrass breeding programmes is discussed. 相似文献
10.
Plant architecture is important for cotton cultivation and breeding. In this study, two mapping generations/populations F2 and F2:3 in Upland cotton (Gossypium hirsutum L.), derived from ‘Baimian1’ and TM‐1, were used to identify quantitative trait loci (QTLs) for 10 plant architecture traits. A total of 55 main‐effect QTLs (M‐QTLs) were detected. Four common M‐QTLs, qTFB‐10(F2/F2:3) for total fruit branches, qFBL‐26b(F2)/qFBL‐26(F2:3) for fruit branch length, qFBA‐5(F2/F2:3) for fruit branch angle and qFBN‐26b(F2)/qFBN‐26(F2:3) for fruit branch nodes, were found. The synergistic alleles and the negative alleles can be utilized in cotton plant architecture breeding programmes according to specific breeding objectives. Altogether 54 pairs of epistatic QTLs (E‐QTLs) exhibiting the interactions of additive‐by‐additive (AA), additive‐by‐dominant (AD), dominant‐by‐additive (DA) and dominant‐by‐dominant (DD) were detected. The epistasis appeared to be an important contributor to genetic variation in cotton plant architecture traits. Therefore, the identified markers associated with E‐QTLs as well as M‐QTLs will be of importance in future breeding programmes to develop cotton cultivars exhibiting desirable plant architecture. 相似文献
11.
Recombinant inbred lines (RILs) derived from a cross between Brassica rapa L. cv. ‘Sampad’, and an inbred line 3‐0026.027 was used to map the loci controlling silique length and petal colour. The RILs were evaluated under four environments. Variation for silique length in the RILs ranged from normal, such as ‘Sampad’, to short silique, such as 3‐0026.027. Three QTL, SLA3, SLA5 and SLA7, were detected on the linkage groups A3, A5 and A7, respectively. These QTL explained 36.0 to 42.3% total phenotypic variance in the individual environments and collectively 32.5% phenotypic variance. No additive × additive epistatic interaction was detected between the three QTL. Moreover, no QTL × environment interaction was detected in any of the four environments. The number of loci for silique length detected based on QTL mapping agrees well with the results from segregation analysis of the RILs. In case of petal colour, a single locus governing this trait was detected on the linkage group A2. 相似文献
12.
Sex expression is of primary importance for the genetic improvement and production of monoecious hemp: masculinized phenotypes are associated with higher fungal sensitivity, and feminized phenotypes with higher seed yields. However, sex expression varies quantitatively among plants and nodes and with time. Here, we developed eight variables that characterize the sex expression in monoecious hemp to dissect its genetic determinism. The monoecy degree (MD), ranging from 1 (mostly male flowers) to 5 (mostly female flowers), was recorded for each node of 167 plants, at 6 times at 1‐week intervals. Two types of longitudinal variables were constructed: ‘synthesis’ (mean MD and percentages of nodes of each MD) and ‘structure’. The latter consisted of the parameters of a logistic curve describing MD as a function of the node position. An r‐square of 0.97 was obtained between the estimated and observed MD values, and the logistic parameters were weakly correlated with each other and with the synthesis variables. Therefore, we conclude that the present modelling approach is relevant for characterizing the sex expression in monoecious hemp. 相似文献
13.
Xiaona Zhang Pingbo Li Peng Yun Lingqiang Wang Guanjun Gao Qinglu Zhang Lijun Luo Chunyu Zhang Yuqing He 《Plant Breeding》2019,138(6):820-829
Vitamin E (VE) is an important nutritional trait in rice grains. In order to dissect the genetic basis underlying VE content, a recombinant inbred lines population derived from 'Zhenshan 97B' and 'Nanyangzhan' was used for quantitative trait locus (QTL) analysis. Totally, 29 QTLs for six VE traits were identified in 2 consecutive years. Among those, five QTLs repeatedly detected in two years formed a cluster on chromosome 2, which was responsible for all five VE isomers. OsγTMT, the gene encoding γ‐tocopherol methyltransferase in rice, was located to the same region and treated as the candidate gene. Sequence analysis of alleles from two parents revealed many polymorphisms, including 19 single nucleotide polymorphisms (SNPs) and two insert/deletions (Indels) in the promoter region, two nonsynonymous SNPs in exons, and 25 SNPs and an Indel in introns. Besides, a QTL for δ‐tocotrienol and two QTLs for α‐tocopherol were repeatedly detected on chromosome 5 and 8, respectively, all three regions carrying no homologous genes involved in VE biosynthesis. These results could be useful in development of rice lines displaying desirable VE content. 相似文献
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Ashutosh Kushwah Dharminder Bhatia Upasana Rani Inderjit Singh Yadav Inderjit Singh C Bharadwaj Sarvjeet Singh 《Breeding Science》2021,71(2):229
Ascochyta blight (AB) and botrytis grey mould (BGM) are the most devastating fungal diseases of chickpea worldwide. The wild relative of chickpea, C. reticulatum acc. ILWC 292 was found resistant to BGM whereas, GPF2 (Cicer arietinum L.) is resistant to AB. A total of 187 F8 Recombinant Inbred Lines (RILs) developed from an inter-specific cross of GPF2 × C. reticulatum acc. ILWC 292 were used to identify quantitative trait loci (QTLs) responsible for resistance to AB and BGM. RILs along with parents were evaluated under artificial epiphytotic field/laboratory conditions for two years. Highly significant differences (P < 0.001) were observed for reaction to both pathogens in both years. Parents and RILs were genotyped-by-sequencing to identify genome wide single nucleotide polymorphism (SNPs). A total of 1365 filtered and parental polymorphic SNPs were used for linkage map construction, of which, 673 SNPs were arranged on eight linkage groups. Composite interval mapping revealed three QTLs for AB and four QTLs for BGM resistance. Out of which, two QTLs for AB and three QTLs for BGM were consistent in both years. These QTLs can be targeted for further fine mapping for deployment of resistance to AB and BGM in elite chickpea cultivars using marker-assisted-selection. 相似文献
16.
Plant breeding for drought-prone habitats envisages a favorable combination of grain yield and drought resistance. Though
several components enhancing drought resistance have been identified in rice,their association with grain yield, under low-moisture
stress, has been established in very few instances. We attempt to study the associations between rice grain yield and root
system parameters both at phenotypic and genotypic levels. The doubled haploid population of IR64/Azucena was evaluated for
root related traits at peak vegetative stage and grain yield related traits under both low-moisture stress and non stress
conditions. ‘Mean environment’ was computed for yield related traits. Correlation and QTL mapping was attempted to find out
the associations. The correlation between maximum root length and grain yield was positive under stress and negative in non
stress. Genotypes with thicker and deeper roots, manifested higher biomass and grain yield under stress. Only one QTL found
to increase days to flowering in non stress was also found to influence root volume and dry weight negatively under stress.
The study suggests that loci enhancing grain yield and related traits were not pleiotropic with loci for desirable root morphological
traits studied under low-moisture stress at vegetative stage, in the genetic material used in the study. It is thus possible
to combine higher grain yield and desirable root morphological traits, favorably, to enhance productivity of rice under low-moisture
stress. In rainfed ecologies, where deep roots contribute to enhanced drought resistance in rice, the results indicate the
possibility of combining drought resistance with higher levels of grain yield.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
17.
水稻萌发耐淹性种质资源筛选及QTL定位 总被引:1,自引:0,他引:1
萌发耐淹性种质资源的筛选、耐低氧萌发基因的挖掘和利用是选育适宜直播水稻新品种的基础。为简便、高效的评价种质资源的萌发耐淹性,本研究对来自不同年代和地区的191份粳稻种质资源进行了萌发耐淹性鉴定,共获得12份萌发耐淹性强的种质资源,其中连粳15号表现出较强的低氧萌发能力。利用其与籼稻品种黄莉占构建的F2:3分离群体,采用模拟大田的鉴定方法,在水稻1号、3号、9号、10号染色体上共检测到4个QTL,即qGS1、qGS3、qGS9和qGS10。共解释表型变异的70.9%,其中qGS1、qGS3和qGS10,能够被重复检测到,贡献率分别为19.2%~24.0%、12.6%~14.7%、19.1%~20.5%,是稳定表达的QTL位点。这些种质资源和QTL的发现为耐低氧发芽水稻新品种的培育提供了重要的亲本资源、基因资源和标记资源,同时也为选育优良直播稻品种提供了理论依据。 相似文献
18.
Xiaoling Wang Guifu Liu Zhiquan Wang Songliang Chen Yulong Xiao Chuanyuan Yu 《Plant Breeding》2019,138(3):299-308
Panicle length (PL), an important yield‐related trait, strongly affects yield components, such as grain number, grain density and rice quality. More than 200 panicle length quantitative trait loci (PL QTLs) are identified, but only a small number are applied in rice breeding. In this study, we performed QTL analysis for PL using 42 single‐segment substitution lines (SSSLs) derived from nine donors in the genetic background of HJX74. Fourteen QTLs and five heterosis QTLs (HQTLs) for PL were recognised. Three QTLs and four HQTLs acted positively, and the other eleven QTLs and one HQTL acted negatively. By scanning the single heterozygous background region of the F2 population with large‐genetic‐effect SSSLs, we mapped PL loci qPL6‐2 and qPL7‐1 to different locations on chromosomes 6 and 7, respectively, in three consecutive years of independent trials. The genetic effects of these QTLs were further assessed. qPL6‐2 demonstrated the most positive additive effect (QTL), whereas qPL7‐1 achieved the most positive dominant effect (HQTL) for PL. These results indicated that the pyramiding of PL QTLs might increase grain yield and facilitate the application of the beneficial allele in hybrid rice breeding. 相似文献
19.
水稻萌发耐淹性种质资源筛选及QTL定位 总被引:2,自引:0,他引:2
作者用水培的方法研究水稻不同生育期缺磷的影响,结果证明:幼苗期缺磷的影响最显著,表现出生长缓慢,分蘖减少。因此,栽培水稻在幼苗期及分蘖期充分供应磷肥有特别重要意义。 相似文献
20.
Mapping of quantitative trait loci associated with rice black‐streaked dwarf virus disease and its insect vector in rice (Oryza sativa L.)
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Tingting Xu Yuqiang Liu Le Zhang Linglong Liu Chunming Wang Jinlong Hu Zhiguang Sun Gen Pan Shizhuo Xiao Jun He Jie Huang Zeyu Qiu Dejia Fan Ling Jiang Xianian Cheng Huqu Zhai Jianmin Wan 《Plant Breeding》2018,137(5):698-705
Rice black‐streaked dwarf virus disease (RBSDVD), transmitted by small brown planthopper (SBPH, Laodelphax striatellus), causes serious loss in rice production. Breeding resistant cultivars are one of the most effective strategies to control the virus disease and its vector. By both natural inoculations in the field and modified seedling‐box screening test in the glasshouse, an indica variety WR24 showed high resistance to RBSDVD and SBPH. An F2:3 population consisting of 153 lines derived from a cross between WR24 and a susceptible japonica variety Suyunuo was used for quantitative trait loci (QTL) analysis of RBSDVD and SBPH resistance. The linkage map consisting of 130 SSR markers was constructed with an average marker interval of 13.90 cM, spanning a total of 1890.9 cM. Totally, five QTLs for RBSDV resistance, viz. qRBSDV3WR24, qRBSDV6WR24, qRBSDV7WR24, qRBSDV9WR24 and qRBSDV11WR24, were detected on chromosomes 3, 6, 7, 9 and 11, with LOD scores of 2.7, 3.08, 3.13, 5.28 and 3.7, respectively. Meanwhile, three QTLs for SBPH resistance, including qSBPH5WR24, qSBPH7WR24 and qSBPH10WR24, were mapped on chromosomes 5, 7 and 10, with LOD scores of 2.18, 3.5 and 3.57, respectively. All resistant alleles were from WR24. Among these QTLs, qRBSDV7WR24, qSBPH5WR24 and qSBPH10WR24 were newly reported, and qSBPH10WR24 showed major effect that explained 17.9% of total phenotypic variance. The RBSDVD and SBPH resistance QTLs and the tightly linked DNA markers can be utilized in RBSDV and SBPH resistance breeding in rice. 相似文献