茄子褐纹病的研究现状与展望

褐纹病是茄子生产中的重大病害,其病原菌能够侵染几乎所有的茄子及其近缘属植物。随着其在全球范围内的传播,该病已是近年来茄子生产和研究受到普遍关注的热点。目前国际上关于褐纹病的研究总体还较少,本研究主要回顾和总结了国内外茄子褐纹病的研究概况,对病原菌的形态、分类地位及其生物学特性、传播方式及环境条件、发病症状、抗性遗传及抗病机制、分级标准和综合防治进行了综述。同时探讨了目前关于该病害研究所存在的问题及研究方向,认为全国范围内开展褐纹病菌的分离及利用分子生物学方法开展鉴定、抗源材料的筛选利用及抗病基因的定位和分离是解决茄子褐纹病危害的主要研究方向,以期为褐纹病研究提供理论基础。     

Chloroplast DNA diversity in brinjal eggplant (Solanum melongena L.) and related species

Chloroplast DNA (cpDNA) samples of brinjal eggplant (S. melongena) and representative related species including S. incanum sensu lato (or S. campylacanthum sensu stricto), S. lichtensteinii, S. marginatum, S. macrocarpon, S. anguivi and S. aethiopicum and also S. nigrum as an outgroup taxon, were digested by 14 restriction enzymes and analyzed by using electrophoresis and a cpDNA probe. All the species used here were clearly separated in the cpDNA analysis, except the pair S. anguivi and S. aethiopicum. From the dendrogram constructed by the unweighted pair-group method, it is suggested that S. incanum is the closest to S. melongena and the next closest species is S. macrocarpon followed by S. aethiopicum (and S. anguivi), S. lichtensteinii, S. marginatum and finally the outgroup taxon S. nigrum. The tree derived by the neighbour-joining method suggests phyletic relationships that agree with those indicated by crossability and seed coat anatomy, but conflict with conventional classifications based on morphology. In particular, members of sections Oliganthes and Melongena are not separated and no cpDNA variation was found within either of the morphologically diverse cultigens, S. aethiopicum and S. melongena. Paradoxically, the morphologically similar species S. incanum, S. lichtensteinii and S. marginatum have diverged greatly in their cpDNA. The significance of these results is discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic resistance to root-knot nematode (Meloidogyne javanica) in eggplant (Solanum melongena)

A germplasm collection of 39 eggplant Solanum melongena genotypes and one accession of S. torvum was evaluated for resistance to the root-knot nematode (Meloidogyne javanica) by using controlled greenhouse tests. Different degrees of resistance to the disease caused by this nematode species were observed among the genotypes tested. Complete resistance (no nematode egg mass formation up to 7 weeks after inoculation) was detected in one accession belonging to domesticated S. melongena species. Good levels of incomplete resistance were also observed in some commercial eggplant genotypes. This is apparently the first report of a source of complete resistance to M. javanica within the S. melongena gene pool and our finding could greatly facilitate the incorporation of this trait into commercial eggplant cultivars. S. torvum, previously described as resistant to several root-knot nematode species (including M. javanica, M. arenaria, and M. incognita) was also confirmed as a source of resistance to this Brazilian population of M. javanica. Therefore, S. torvum can be considered as one of the most promising sources of broad-spectrum resistance genes against root-knot nematodes. Broad-spectrum resistance is of paramount importance for breeding programmes focused on the development of cultivars for tropical and subtropical areas of the world where multiple infestation of soils with distinct Meloidogyne species is a very common feature.     

Genetic analysis of resistance to tomato late blight in Solanum pimpinellifolium accession PI 163245

Late blight (LB), caused by Phytophthora infestans, is one of the most devastating diseases of tomato (Solanum lycopersicum) worldwide. Due to the emergence of new and aggressive P. infestans isolates, identifying new genetic resistance to LB is a priority in tomato breeding. Recently, we reported the identification of several Solanum pimpinellifolium accessions with strong LB resistance. In this study, we investigated the utility of resistant accession PI 163245 for tomato breeding by examining heritability (h²) of resistance and the response to selection for resistance. Estimates of h² based on F₂ : F₃ and F₃ : F₄ parent : offspring correlation analyses averaged 0.79 and 0.94, respectively, suggesting the heritable nature of LB resistance in PI 163245. Analysis of response to selection for resistance from F₂ to F₄ generations indicated a realized h² of 0.63, confirming the utility of this resistance in tomato breeding. Two methods of estimating the minimum number of loci involved indicated the presence of one major resistance locus. Currently, genetic mapping and breeding efforts are underway to further confirm the viability of this accession for improving tomato LB resistance.     

Identification of alleles at two loci controlling resistance to Phomopsis stem blight in narrow-leafed lupin (Lupinus angustifolius L.)

The genetics of resistance to Phomopsis stem blight caused by Diaporthe toxica Will., Highet, Gams & Sivasith. in narrow-leafed lupin (Lupinus angustifolius L.) was studied in crosses between resistant cv. Merrit, very resistant breeding line 75A:258 and susceptible cv. Unicrop. A non-destructive glasshouse infection test was developed to assess resistance in the F₁, F₂, selected F₂-derived F₃ (F_2:3) families, and in selfed parent plants. The F₁ of Unicrop × 75A:258 (and reciprocal cross) was very resistant, and the F₂ segregated in a ratio of 3:1 (resistant: susceptible), which suggested the presence of a single dominant allele for resistance in 75A:258. In Merrit × Unicrop (and reciprocal), the F₁ was moderately resistant, and the F₂ segregated in a ratio of 3:1 (resistant: susceptible). Thus Merrit appeared to carry an incompletely dominant resistance allele for resistance. The F₁ of Merrit × 75A:258 (and reciprocal) was very resistant and the F₂ segregated in a ratio of 15:1 (resistant: susceptible), which supported the existence of independently segregating resistance alleles for resistance in 75A:258 and Merrit. Alleles at loci for early flowering (Ku) and speckled seeds (for which we propose the symbol Spk) segregated normally and independently of the resistance alleles. Resistant F₂ plants gave rise to uniformly resistant or segregating F_2:3 families, whereas susceptible F₂ plants gave rise only to susceptible F_2:3 families. However, the variation in resistance in the F₂ and some F_2:3 families of crosses involving 75A:258, from moderately to extremely resistant, was greater than that expected by chance or environmental variation. We propose the symbols Phr1 to describe the dominant resistance allele in 75A:258, and Phr2 for the incompletely dominant resistance allele in Merrit. Phr1 appears to be epistatic to Phr2, and expression of Phr1 may be altered by independently segregating modifier allele(s). This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of late blight resistance in Solanum pimpinellifolium accession PI 270441: Heritability and response to selection

Late blight (LB), caused by Phytophthora infestans, is a destructive disease of tomato (Solanum lycopersicum) worldwide. Currently, there are few commercial cultivars of tomato with resistance to LB, and the disease is mainly controlled by heavy use of fungicides. Due to the emergence of fungicide‐resistant pathogen isolates, there is a concerted effort to identify new genetic sources of resistance and breed new resistant cultivars. A recent screening identified several new tomato accessions with strong resistance to LB. Here, we report on the genetic basis of LB resistance in S. pimpinellifolium accession PI 270441, as determined by generation means analysis and analysis of response to selection, using populations derived from crosses with LB‐susceptible breeding line Fla. 8059. Heritability of LB resistance ranged from 0.76 to 0.78, and the minimum number of genes was estimated 1—few. These results suggest that transfer of LB resistance from PI 270441 to the cultivated tomato should be feasible via a traditional backcross breeding approach. Genetic mapping studies are underway to identify molecular markers associated with resistance in this accession.     

DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.)

Resistance of chickpea against the disease caused by the ascomycete Ascochyta rabiei is encoded by two or three quantitative trait loci, QTL1, QTL2 and QTL3. A total of 94 recombinant inbred lines developed from a wide cross between a resistant chickpea line and a susceptible accession of Cicer reticulatum, a close relative of cultivated chickpea, was used to identify markers closely linked to QTL1 by DNA amplification fingerprinting in combination with bulked segregant analysis. Of 312 random 10mer oligonucleotides, 3 produced five polymorphic bands between the parents and bulks. Two of them were transferred to the population on which the recent genetic map of chickpea is based, and mapped to linkage group 4. These markers, OPS06-1 and OPS03-1, were linked at LOD-scores above 5 to markers UBC733B and UBC181A flanking the major ascochyta resistance locus. OPS06-1 mapped at the peak of the QTL between markers UBC733B (distance 4.1 cM) and UBC181A (distance 9.6 cM), while OPS03-1 mapped 25.1 cM away from marker UBC733B on the other flank of the resistance locus. STMS markers localised on this linkage group were transferred to the population segregating for ascochyta resistance. Three of these markers were closely linked to QTL1. Twelve of 14 STMS markers could be used in both populations. The order of STMS markers was essentially similar in both populations, with differences in map distances between them. The availability of flanking STMS markers for the major resistance locus QTL1 will help to elucidate the complex resistance against different Ascochyta pathotypes in future. This revised version was published online in August 2006 with corrections to the Cover Date.     

SSR marker tightly linked to the Ti locus in Soybean [Glycine max (L.) Merr.]

Soybean is a major source of protein meal in the world. Soybean kunitz trypsin inhibitor (SKTI) protein is a responsible for the inferior nutritional quality of unheated or incompletely heated soybean meal. The primary objective of this research was to identify DNA markers linked to the Ti locus controlling presence and absence of kunitz trypsin inhibitor protein. Two mapping populations were developed. Population 1 was derived from a cross between cultivar Jinpumkong2 (TiTi) and C242 (titi). Population 2 was made from a mating between cultivar Clark (TiTi) and C242. The F₁ plants were grown in the greenhouse to produce F₂ seeds. Each F₂ seed from F₁ plants was analyzed electrophoretically to determine the presence of the SKTI protein band. One-thousand RAPD primers, 342 AFLP primer sets, and 35 SSR primers were used to map Ti locus in population 1 and 2. The presence of SKTI protein was dominant to the lack of a SKTI protein and kunitz trypsin inhibit protein band was controlled by a single locus. Twelve DNA markers (4 RAPD, 4 AFLP, and 3 SSR) and Ti locus were found to be genetically linked in population 1 consisted with 94 F₂ individual plants. Three SSR markers (Satt409, Satt228, and Satt429) were linked with Ti locus within 10 cM. Satt228 marker was tightly linked with Ti locus. Satt228 marker was tightly linked within 0–3.7 cM of the Ti locus and may be useful in a marker assisted selection program.     

青海省20个主要马铃薯审定品种的SSR标记遗传分析

利用SSR标记技术对20份青海省审定的马铃薯品种进行了遗传多样性分析,分别提取20份马铃薯品种的DNA,进行PCR扩增,共检测出136个清晰可读条带,平均每对引物5.7个条带.其中具有多态性的条带130个,平均多态性比率达95.59％.多态信息量变化范围为0.225 6～0.948 4,平均为0.768 3.扩增产物片段大小在100～300 bp之间.聚类分析结果在相似系数为0.61处可将20份马铃薯品种划分为5类,从分子水平上表明供试材料的遗传基础较狭窄.聚类分析结果与供试材料来源有较好的一致性.     

Interspecific hybrids between three eggplant (Solanum melongena L.) cultivars and two wild species (Solanum torvum Sw. and Solanum sisymbriifolium Lam.)

Three Greek eggplant cultivars, ‘Langada’, ‘Tsakoniki’ and ‘Emi’ (2n= 24), were crossed with two wild species (Solanum torvum Sw., 2n= 24 and Solanum sisymbriifolium Lam., 2n= 24). Ovules isolated 15-27 days after pollination were cultured in a modified MS medium at 24°C and a 16h photoperiod. Fifty days later, the ovules were dissected and the interspecific embryos were cultured in the same medium. Interspecific hybrids were achieved only from crosses between the eggplant cultivars and S. torvum. The hybridity of the putative interspecific F¹ hybrid (Solanum melongena×S. torvum) was confirmed by using morphological and biochemical (isozyme isocitrate dehydrogenase A, phosphoglucomutase A, phosphoglucose isomerase B, 6-phosphogluconate dehydrogenase A, 6-phosphogluconate dehydrogenase B) markers. The F¹ plants (‘Langada’×S. torvum) were selfpollinated and backcrossed to both parents. Fruits, however, were produced only when the F¹ hybrid was backcrossed as female with the eggplant cultivar ‘Langada’.     

Genetic analysis of late blight resistance in a new RIL population of tomato derived from LB-resistant Solanum pimpinellifolium accession PI 270443

Late blight (LB), caused by Phytophthora infestans, is one of the most devastating diseases of tomato (Solanum lycopersicum) worldwide. Aggressive pathogen isolates resistant to fungicides have driven research in favour of finding new sources of host resistance for tomato breeding. Recently, we reported S. pimpinellifolium accession PI 270443 exhibiting LB resistance stronger than all commercial LB-resistant tomato cultivars. The purpose of this study was to examine the inheritance of LB resistance conferred by this accession. An interspecific cross was made between PI 270443 and a LB-susceptible tomato breeding line and advanced to F₁₀ generation. A total of 166 F₉ and corresponding F₁₀ recombinant inbred lines (RILs) were evaluated for response to LB in four replicated greenhouse experiments. Estimates of heritability (h²) of LB resistance, determined by parent–offspring (F₉:F₁₀) correlation analysis, ranged from 0.66 to 0.81, with an average of 0.76. The moderately high h² of LB resistance in PI 270443 suggests the utility of this accession for tomato breeding. Molecular mapping and RNA-sequencing efforts are underway to identify genes underlying LB resistance in PI 270443.     

SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases

Cultivated groundnut (Arachis hypogaea L.) is an agronomically and economically important oilseed crop grown extensively throughout the semi-arid tropics of Asia, Africa and Latin America. Rust (Puccinia arachidis) and late leaf spot (LLS, Phaseoisariopsis personata) are among the major diseases causing significant yield loss in groundnut. The development of varieties with high levels of resistance has been constrained by adaptation of disease isolates to resistance sources and incomplete resistance in resistant sources. Despite the wide range of morphological diversity observed in the cultivated groundnut gene pool, molecular marker analyses have thus far been unable to detect a parallel level of genetic diversity. However, the recent development of simple sequence repeat (SSR) markers presents new opportunities for molecular diversity analysis of cultivate groundnut. The current study was conducted to identify diverse disease resistant germplasm for the development of mapping populations and for their introduction into breeding programs. Twenty-three SSRs were screened across 22 groundnut genotypes with differing levels of resistance to rust and LLS. Overall, 135 alleles across 23 loci were observed in the 22 genotypes screened. Twelve of the 23 SSRs (52%) showed a high level of polymorphism, with PIC values ≥0.5. This is the first report detecting such high levels of genetic polymorphism in cultivated groundnut. Multi-dimensional scaling and cluster analyses revealed three well-separated groups of genotypes. Locus by locus AMOVA and Kruskal–Wallis one-way ANOVA identified candidate SSR loci that may be valuable for mapping rust and LLS resistance. The molecular diversity analysis presented here provides valuable information for groundnut breeders designing strategies for incorporating and pyramiding rust and late leaf spot resistances and for molecular biologists wishing to create recombinant inbred line populations to map these traits.E.S. Mace and D.T. Phong contributed equally to this work.     

东南亚茄子种质资源ISSR遗传多样性分析

为探讨东南亚和中国华南地区茄子育种资源的遗传差异,研究采用ISSR分子标记对来自泰国和马来西亚的10份茄子材料及中国和南美的8份材料进行遗传多样性分析。结果表明,17条ISSR引物共扩增出433条谱带,其中多态性条带390条,平均多态率为92%。17条引物在18份材料中的平均观测等位基因数、平均有效等位基因数、平均Nei’s基因多样度和平均香农信息指数分别为1.8971、1.4778、0.2850、0.4336,18份材料间的遗传相似系数GS在0.55~0.81之间。运用NTSYSpc2.10软件的UPGMA方法进行聚类分析,结果表明在遗传相似系数0.67时18份材料可分为2个类群,其中来自于东南亚的10份材料在第1类群,来自于南美的3份材料在第2类群。研究结果表明,东南亚茄子材料与中国和南美茄子材料间遗传多样性丰富,可为茄子种质资源的进一步研究和利用提供理论依据。     

Identification of QTLs associated with resistance to Phomopsis pod blight (Diaporthe toxica) in Lupinus albus

Phomopsis blight in Lupinus albus is caused by a fungal pathogen, Diaporthe toxica. It can invade all plant parts, leading to plant material becoming toxic to grazing animals, and potentially resulting in lupinosis. Identifying sources of resistance and breeding for resistance remains the best strategy for controlling Phomopsis and reducing lupinosis risks. However, loci associated with resistance to Phomopsis blight have not yet been identified. In this study, quantitative trait locus (QTL) analysis identified genomic regions associated with resistance to Phomopsis pod blight (PPB) using a linkage map of L. albus constructed previously from an F₈ recombinant inbred line population derived from a cross between Kiev-Mutant (susceptible to PPB) and {"type":"entrez-protein","attrs":{"text":"P27174","term_id":"14195583","term_text":"P27174"}}P27174 (resistant to PPB). Phenotyping was undertaken using a detached pod assay. In total, we identified eight QTLs for resistance to PPB on linkage group (LG) 3, LG6, LG10, LG12, LG17 and LG27 from different phenotyping environments. However, at least one QTL, QTL-5 on LG10 was consistently detected in both phenotyping environments and accounted for up to 28.2% of the total phenotypic variance. The results of this study showed that the QTL-2 on LG3 interacts epistatically with QTL-5 and QTL-6, which map on LG10 and LG12, respectively.     

中国88个马铃薯审定品种SSR指纹图谱构建与遗传多样性分析

为对马铃薯品种鉴别、优良杂交组合选配提供分子水平上的依据,利用SSR标记构建了中国2000-2007年审定的88个马铃薯品种的指纹图谱并进行了遗传多样性分析。以138对SSR引物对16份遗传差异较大的马铃薯材料的基因组DNA进行了扩增,筛选出10对多态性高、谱带清晰的引物。利用10对SSR引物对全部供试材料进行扩增及电泳检测,共检测到135个等位位点,其中133个为多态性位点,多态性比率达98.52%。每对SSR引物扩增出的等位位点数7~22个,平均13.5个,多态性信息量变化范围为0.7604~0.9375,平均0.8501。通过对电泳检测结果的统计分析,利用S180、S25、S7、S151、S184及S192等6对引物构建了88份供试材料的SSR指纹图谱。聚类分析表明,在相似系数0.620处,所有供试材料被被聚为一类,在相似系数0.652处,81.8%的材料仍然聚在一起,从分子水平上表明供试材料遗传基础非常狭窄。聚类分析结果与供试材料系谱来源有较好一致性,同一栽培区域育成的品种在不同程度上聚在一类。     

Identification of marker alleles linked to fire blight resistance QTLs in apple genotypes

Molecular marker analysis can be an effective tool when searching for new fire blight resistance donors. It can speed up the breeding process as well, even though many of the available markers linked to fire blight resistance QTLs have not yet been tested by screening a large number of cultivars. The aim of this study was to search for alternate sources of the three major QTLs of fire blight resistance; FBF7, FB_MR5 and FB_E, as well as to test the efficiency of some markers linked to minor QTLs. Altogether, nine primer pairs were used on 77 genotypes including new Hungarian cultivars and old apple cultivars from the Carpathian basin. Several marker alleles of FB resistance QTLs have been detected in the screened genotypes, most importantly the alleles coupling with FB_MR5 in the old cultivars ‘Kéresi muskotály’, ‘Szabadkai szercsika’ and ‘Batul’. We propose these cultivars as the first available resistance donors of FB_MR5 instead of the crabapple Malus × robusta 5. The results also bring new information regarding the resistance alleles of new Hungarian cultivars and selections.     

Heritability of late blight resistance in tomato conferred by Solanum pimpinellifolium accession PI 224710

Late blight (LB), caused by the oomycete Phytophthora infestans, is one of the most destructive diseases of tomato and potato worldwide. Identifying and characterizing new sources of resistance is essential given the emergence of new aggressive and fungicide‐resistant P. infestans isolates. Recently, we reported identification of several new sources of LB resistance within the tomato wild species, Solanum pimpinellifolium. In this study, we examined heritability (h²) of LB resistance conferred by the S. pimpinellifolium accession PI 224710 using a parent–offspring regression (correlation) analysis. F₂ and F₃ progeny populations, derived from crosses between PI 224710 and a LB‐susceptible tomato breeding line, were evaluated for response to LB infection. To obtain a better estimate of h², the F₃ progeny were evaluated for LB resistance in two separate replicated experiments. The h² estimates were similar in the two experiments and averaged ~0.87, suggesting that this resistance was highly heritable. Two different methods estimated involvement of one resistance locus. Breeding and mapping efforts are underway to further assess the viability of this newly reported LB resistance.