Check-list for scientific names of common parasitic fungi. Supplement Series 2b (additions and corrections): Fungi on field crops: Cereals and grasses

This paper suplements Series 2b (Neth. J. Pl. Path. 83 (1977) 165–204) and documents the nomenclature of an additional 10 parasitic fungi. The data on 25 fungi (teleomorph and/or anamorph) previously treated in Series 2b have been brought up to date and in accordance with the recent changes in the International Code of Botanical Nomenclature. The selected names include one new variety and two new infraspecific combinations, viz.Tapesia yallundae var.acuformis Boerema et al., anam.Ramulispora herpotrichoides var.acuformis (Nirenberg) Boerema et al. andUstilago tritici (Pers.) Rostrup f. sp.hordei (Schaffnit) Boerema et al.     

Check-list for scientific names of common parasitic fungi. Series 3b: Fungi on bulbs: Amaryllidaceae and Iridaceae

This list is a continuation of Series 3a (Neth. J. Pl. Path. 94 (1988), Supplement 1), an account of the nomenclature of common parasitic fungi on bulbs as used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture and Fisheries. The selected names include one new species,Curvularia gladioli Boerema & Hamers, one new pathogenic form,Fusarium oxysporum f.sp.croci Boerema & Hamers, and one new combination,Sclerotium narcissi (Sacc.) Boerema & Hamers.     

Check-list for scientific names of common parasitic fungi. Supplement Series 2a (additions and corrections): Fungi on field crops: Beet and potato; caraway,flax and oil-seed poppy

This paper supplements Series 2a (Neth. J. Pl. Path. 82 (1976) 193–214) and documents the nomenclature of an additional four parasitic fungi. The data of sixteen fungi (teleomorph and/or anamorph) previously treated in Series 2a have been brought up to date and in accordance with the recent changes in the International Code of Botanical Nomenclature (‘Sydney Code’). One new combination is proposed, viz.Uromyces beticola (Bellynck) Boerema et al. The scientific names used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture and Fisheries conform with those selected in the check-list.     

Check-list for scientific names of common parasitic fungi. Supplement Series 2b (additions and corrections): Fungi on field crops: Cereals and grasses

This paper suplements Series 2b (Neth. J. Pl. Path. 83 (1977) 165–204) and documents the nomenclature of an additional 10 parasitic fungi. The data on 25 fungi (teleomorph and/or anamorph) previously treated in Series 2b have been brought up to date and in accordance with the recent changes in the International Code of Botanical Nomenclature. The selected names include one new variety and two new infraspecific combinations, viz.Tapesia yallundae var.acuformis Boerema et al., anam.Ramulispora herpotrichoides var.acuformis (Nirenberg) Boerema et al. andUstilago tritici (Pers.) Rostrup f. sp.hordei (Schaffnit) Boerema et al.     

Check-list for scientific names of common parasitic fungi. Series 3c: Fungi on bulbs: ‘additional crops’ belonging to the Araceae,Begoniaceae, Compositae,Oxalidaceae and Ranunculaceae

This list is a continuation and also the ending of Series 3a and 3b [Neth. J. Pl. Path. 94 (1988), Supplement 1 and 95 (1989), Supplement 3], an account of the nomenclature of parasitic fungi on bulbs as used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture, Nature Management and Fisheries. The ‘additional crops’ subject to this Series 3c do not refer to bulbs in the common sense, but come within the present Dutch definition of ‘Bolgewassen’. The selected names include one new species (anamorph):Entylomella dahliae Ciferri ex Boerema & Hamers.     

Check-list for scientific names of common parasitic fungi. Series 3b: Fungi on bulbs: Amaryllidaceae and Iridaceae

This list is a continuation of Series 3a (Neth. J. Pl. Path. 94 (1988), Supplement 1), an account of the nomenclature of common parasitic fungi on bulbs as used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture and Fisheries. The selected names include one new species,Curvularia gladioli Boerema & Hamers, one new pathogenic form,Fusarium oxysporum f.sp.croci Boerema & Hamers, and one new combination,Sclerotium narcissi (Sacc.) Boerema & Hamers.A contribution towards the costs of publication provided by the Landbouw Export Bureau Fund, Wageningen, is gratefully acknowledged.     

Check-list for scientific names of common parasitic fungi. Series 3a: Fungi on bulbs: Liliaceae

This list gives a first account on the nomenclature of common parasitic fungi on bulbs as used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture and Fisheries. The selected names include one new species,Colletotrichum lilii Plakidas ex Boerema & Hamers, and four new combinations:Botrytis convallariae (Kleb.) Ond?ej ex Boerema & Hamers,Puccinia sessilis Schneid. ex Schröt. f. sp.convallariae-digraphidis (Kleb.) Boerema & Hamers and f. sp.smilacearum-digraphidis (Kleb.) Boerema & Hamers, andSclerotium rolfsii var.delphinii (Welch) Boerema & Hamers.     

Check-list for scientific names of common parasitic fungi. Series 2c: Fungi on field crops: pulse (legumes) and forage crops (herbage legumes)

This list is a continuation of Series 2a and 2b (Neth. J. Pl. Path. 82 (1976) 193–214 and 83 (1977) 165–204), an account of the nomenclature of common parasitic fungi on field crops as used in official publications of the Netherlands Society of Plant Pathology and the Netherlands Ministry of Agriculture and Fisheries.Samenvatting In alfabetische volgorde wordt de nomenclatuur behandeld van de parasitaire schimmels bij erwten, stambonen en veldbonen, alsmede bij diverse klavers inclusief honingklaver en hopperupsklaver, lupinen, luzerne, serradella en wikken. Deze naamgeving zal worden gebruikt in de officiële publikaties van de Nederlandse Planteziektenkundige Vereniging en het Ministerie van Landbouw en Visserij.     

Euphresco Sendo: An international laboratory comparison study of molecular tests for <Emphasis Type="Italic">Synchytrium endobioticum</Emphasis> detection and identification

An international test performance study (TPS) was organised to generate validation data for three molecular Synchytrium endobioticum tests: van den Boogert et al. (European Journal of Plant Pathology 113, 47–57, 2005), and van Gent-Pelzer et al. (European Journal of Plant Pathology, 126, 129-133, 2010) for the detection of S. endobioticum, and the pathotype 1(D1) identification test described by Bonants et al. (European Journal of Plant Pathology, 143, 495-506, 2015). Two TPS rounds were organised focussing on different test matrices, i.e. round 1: warted potato tissue, and round 2: resting spore suspensions. When using the tests for detection and identification of S. endobioticum in warted potato tissue, no significant differences were observed for diagnostic sensitivity, diagnostic specificity, overall accuracy, analytical sensitivity and robustness. When using the tests for detection and identification of S. endobioticum in resting spore suspensions, the van den Boogert and van Gent-Pelzer tests significantly outperform the Bonants test for diagnostic sensitivity and diagnostic specificity. For overall accuracy and analytical sensitivity, the van Gent-Pelzer significantly outperforms the van den Boogert and Bonants tests and is regarded as the test of choice when identifying S. endobioticum from resting spores. Tests regarded fit for purpose for routine testing of wart material and resting spore suspensions are proposed for the update of EPPO standard PM7/28(1) Synchytrium endobioticum.     

Root-specific expression of defensin in transgenic tobacco results in enhanced resistance against <Emphasis Type="Italic">Phytophthora parasitica</Emphasis> var. <Emphasis Type="Italic">nicotianae</Emphasis>

Phytophthora species are soil-borne pathogens that damage plants in both agro- and natural ecosystems. To suppress the devastating pathogen, we generated a root-specific expression system using a specific promoter (pPRP3) conferring elevated expression of the target gene in roots that are very susceptible to soil-borne pathogens. To verify root-specific expression, we compared β-glucuronidase (GUS) expression driven by a constitutive or root-specific promoters in shoots and roots. In histochemical and fluorometric assays, GUS activity was detected in whole tobacco plants when GUS expression was driven by p35S, but was detected only in the roots by pPRP3. We then expressed a pepper defensin (J1–1) gene in tobacco to elucidate its effect on plant resistance. The accumulation of J1–1 was also tissue-specific in transgenic tobacco plants. Finally, transgenic plants carrying GUS or J1–1 genes in combination with p35S or pPRP3 were inoculated with Phytophthora parasitica var. nicotianae and Pythium aphanidermatum. Disease symptoms were significantly suppressed in transgenic plants that accumulated J1–1, regardless of the promoter used. Furthermore, the expression of PR genes was induced in J1–1 transgenic plants, exhibiting much higher levels in p35S-driven J1–1 plants than in pPRP3::J1–1 plants. These results demonstrated that J1–1 transgenic plants were primed for enhanced expression of PR genes, which provided synergistic effects with the defensin for disease resistance.     

<Emphasis Type="Italic">Dittrichia viscosa</Emphasis> and<Emphasis Type="Italic">Rubus ulmifolius</Emphasis> as reservoirs of aphid parasitoids (Hymenoptera: Braconidae: Aphidiinae) and the role of certain Coccinellid species

The role of the self-sown shrubsDittrichia viscosa (L.) W. Greuter andRubus ulmifolius Schott as reservoirs of aphid parasitoids was investigated. In the field studies conducted,D. viscosa grew adjacent to crops of durum wheat and barley andR. ulmifolius grew adjacent to cotton. The relative abundance of the parasitoids of(a) Capitophorus inulae (Passerini) onD. viscosa, (b) Rhopalosiphum padi (Linnaeus) on durum wheat and barley,(c) Aphis ruborum (Börner) onR. ulmifolius, and(d) Aphis gossypii Glover on cotton in various parts of Greece, was assessed during the years 1996–2000. In 2000, the fluctuation of parasitization of the above four aphid species was recorded and the action of the aphidophagous predators of the family Coccinellidae was studied. It was observed thatAphidius matricariae Haliday predominated onC. inulae andR. padi in all sampling cases. In contrast,Lysiphlebus fabarum (Marshall) was the dominant species parasitizingA. ruborum onR. ulmifolius andA. gossypii on cotton in Thessaly (central Greece) and Macedonia (northern Greece), whereasLysiphlebus confusus Tremblay et Eady andBinodoxys acalephae (Marshall) were the dominant parasitoid species in Thrace (northern Greece).Coccinella septempunctata Linnaeus was the most abundant coccinellid species on durum wheat, whereasAdonia variegata (Goeze) predominated on cotton. However, coccinellid individuals were scarce on bothD. viscosa andR. ulmifolius. The present study indicated that these two shrubs can be regarded as useful reservoirs of aphid parasitoids.     

Morphological and molecular characterisation of <Emphasis Type="Italic">Ditylenchus stenurus</Emphasis> n. sp. (Nematoda: Anguinidae) from western Iran

A new species in the genus Ditylenchus, D. stenurus n. sp. collected from western Iran, is described and illustrated herein based on morphological and molecular studies. The new species is characterised by a body length of 772 (663–863) μm, delicate stylet 6 (5–7) μm long, six lines in the lateral field. Median bulb of pharynx well-developed, muscular with crescentic valve. Post-vulval uterine sac well-developed, 35 (30–45) μm long, female tail elongate-conoid, becoming narrow suddenly with finely rounded terminus. The new species comes close in morphology and morphometrics to five known species of the genus, namely D. arachis, D. caudatus, D. clarus, D. myceliophagus, and D. nanus. DNA sequencing data was obtained on the partial 18S, D2/D3 expansion segments of the 28S rRNA gene and internal transcribed spacer (ITS). The phylogenetic relationships of this species with other Ditylenchus spp. using partial 18S–rDNA and D2/D3 indicated that D. stenurus n. sp. clustered together with several species belongs to the D. triformis-group i. e. D. africanus, D. destructor and D. halictus: all sharing a rounded tail terminus and six lines in lateral fields.     

Response to the letter on “Climatic distribution of citrus black spot caused by <Emphasis Type="Italic">Phyllosticta citricarpa.</Emphasis> A historical analysis of disease spread in South Africa” by Fourie et al. (2017)

In a previous study, Martínez-Minaya et al. (European Journal of Plant Pathology 143, 69–83, 2015) performed an analysis of climate-based distribution of citrus black spot (CBS) in South Africa. It was found that CBS was initially confined to humid areas with summer rainfall, but later spread to arid steppe and even desert climates. A strong spatial autocorrelation of CBS distribution was found. Fourie et al. (European Journal of Plant Pathology, 2017) take a critical view of our study, but without presenting any analysis of results to refute our findings. Furthermore, Fourie et al. (European Journal of Plant Pathology, 2017) appear to have misunderstood our work, since many of their criticisms relate to the potential distribution of CBS in Europe, which is beyond the scope of our original study. Fourie et al. (European Journal of Plant Pathology, 2017) highlight the limitations of climate classifications in species distribution modelling. However, this was made explicit in our study, indicating that it was a preparatory work and further advanced modelling studies, including spatial effects, will be needed. Fourie et al. (European Journal of Plant Pathology, 2017) incorrectly assume that we used all of South Africa as the background in the spatial autocorrelation analysis. However, only citrus areas were used and a strong spatial autocorrelation was detected at all distances evaluated. Contrary to what Fourie et al. (European Journal of Plant Pathology, 2017) suggest, similar climate distributions of CBS were obtained at 5′ and 30′ resolution, and also with the national land-cover map of South Africa. The figure comparison presented by Fourie et al. (European Journal of Plant Pathology, 2017) appears to ignore the fact that the maps we used were grid cells of 10 × 10 km and not the line polygons they suggest. Therefore, we consider the conclusions from the Martínez-Minaya et al. (European Journal of Plant Pathology 143, 69–83, 2015) remain entirely valid.     

Description of a new species of seed-gall nematode, <Emphasis Type="Italic">Anguina obesa</Emphasis> n. sp. (Nematoda: Anguinidae) from northern Iran,and its phylogenetic relations with other species and genera

Anguina obesa n. sp., a new species of the genus, causing small seed galls inside the ovaries of foxtail weed plants (Alopecurus mysuroides Huds.) is described and illustrated based on its morphological and molecular characters. The new species is characterized by its 1516–2564 μm long obese females irregularly ventrally curved after fixation, having six lines in lateral fields, 6–9 μm long stylet with well-developed rounded knobs, constriction at junction of isthmus with the pharyngeal bulb, monodelphic-prodelphic female reproductive system, and conical, 60–80 μm long tail. Males of the new species are characterized with their slender 936–1420 μm long body, 25–30 μm long tylenchoid spicules, and bursa not reaching tail tip. Second stage juveniles of the new species were also common inside the galls and also recovered from soil in type locality. The new species is morphologically close to Anguina agropyronifloris, A. amsinckiae, A. paludicola and A. tumefaciens, but is more closely related to A. paludicola, from which it can be separated based on differences in morphological characters and internal transcribed spacer sequence. In Bayesian inference using sequences of the aforementioned genomic fragment, the new species formed a clade with A. agrostis, A. funesta, A. graminis, A. phalaridis and some unidentified isolates, with robust Bayesian posterior probability (BPP). The morphologically closest species, A. paludicola, occupied a separate position, outside of the clade containing the new species. The sequences of two other genomic fragments, 18S and 28S rDNA (D2/D3 region) were also made available for the new species. Morphological comparisons of the new species with the related species are discussed.     

Molecular and morphological characterisation of <Emphasis Type="Italic">Aphelenchoides paraxui</Emphasis> n. sp. (Nematoda: Aphelenchoididae) isolated from <Emphasis Type="Italic">Quercus brantii</Emphasis> in western Iran

Aphelenchoides paraxui n. sp. is described and illustrated from bark samples of an oak tree (Quercus brantii L.) in Kermanshah province, western Iran. The new species is characterized by body length of 500–660 μm (females) and 630–665 μm (males), lip region set off from body contour, lateral fields with four lines, and total stylet 8–9 μm long with small basal swellings. The excretory pore is located ca one body diam. Posterior to metacorpus valve. The spicules are relatively large (29–33 μm in dorsal limb) with apex and rostrum rounded and well developed and the end of the dorsal limb clearly curved ventrad like a hook. The female tail is conical, the terminus having a complicated step-like projection, usually with many tiny nodular protuberances. Male tail bearing six (2 + 2 + 2) caudal papillae and a well-developed mucro. The new species belongs to the Group 2 category of Aphelenchoides species sensu Shahina (1996) in which eight known species among Group 2–4 sensu Shahina namely: A. arcticus, A. asteromucronatus, A. blastophthorus, A. lichenicola, A. saprophilus, A. seiachicus, A. silvester and A. xui, are the most closed species. Molecular analyses of the partial small subunit rDNA gene (SSU), D2/D3 expansion segments of the large subunit rDNA gene (LSU) and internal transcribed spacer (ITS) revealed this as a new species and supported the morphological results.     

Increases in the source to sink ratio related to a higher carbohydrate concentration reduce phoma black stem in sunflower

Phoma black stem (BS), caused by Leptosphaeria lindquistii (synonymous Phoma macdonaldii Boerema) is an endemic disease of sunflower in Argentina and occurs worldwide. The expression of some diseases is related to the translocation of photosynthates during grain fill, which in turn is related to the source to sink ratio (SSr). The aim of this study was to assess the effect of total soluble carbohydrates (TSC) in the stem, and determine the effect of changes in SSr during the grain filling period on the incidence and severity of BS. A range of SSr and TSC was obtained by artificial shading and performing grain excision treatments, in two sunflower hybrids. A positive relationship was determined between SSr and TSC. Both the incidence and severity index of BS decreased with increasing SSr and TSC. This response was affected by the conditions of the experiment and the leaf position, for both incidence and severity of BS, respectively. Rainy days and leaf position (leaf age) were the main factors affecting the relationship between BS and TSC. Results contribute to understanding the physiological basis of the interaction between L. lindquistii and sunflower, and suggest how breeding for particular traits might result in improved cultivars. The results should also be useful for guiding management of the disease.     

Viruses affecting tomato crops in Serbia

In a two-year survey (2011–2012), 3220 samples were collected and analyzed in order to determine the presence and distribution of viruses in tomato crops at 56 localities of 18 districts in Serbia. Out of 12 viruses tested, Cucumber mosaic virus (CMV), Potato virus Y (PVY), Alfalfa mosaic virus (AMV), Tomato spotted wilt virus (TSWV), Tomato mosaic virus (ToMV) and Tobacco mosaic virus (TMV) were detected in 42.1, 40, 11, 8.6, 2.3 and 1.3% of the total tested samples, respectively. The results revealed that CMV was prevalent in 2011 and PVY in 2012. CMV and PVY, apart from being predominant, were also the most widespread viruses. In general, single infections were the most frequent type of infection. Additionally, the most common mixed infections were double infections and the most prevalent combination was CMV and PVY. In 2011, the incidence of diseases and the percentage of all infection types were significantly higher than in 2012. Furthermore, in 2011, regardless of total single infections being prevalent compared to mixed infections, two prevailing viruses were commonly detected in mixed infections. The additional molecular testing of ELISA-negative samples using virus specific primers did not reveal the presence of Pepino mosaic virus (PepMV), Tomato yellow leaf curl virus (TYLC), Tomato infections chlorosis virus (TICV) and Tomato chlorosis virus (ToCV).     

Predators of <Emphasis Type="Italic">Marchalina hellenica</Emphasis> (Hemiptera: Marchalinidae) on pine forests in Turkey

The honeydew of Marchalina hellenica is collected by honeybees for pine honey production, which is of great economic importance in Turkey. During 2009–2011 we investigated the predators of M. hellenica, which is distributed mainly in the areas with a Mediterranean climate – in the Aegean, Marmara and Mediterranean regions of Turkey. The findings showed that M. hellenica has many predators in the studied areas and that these play an important role in the forest ecosystem. These predators are: Anystis baccarum (L.) (Acarina: Anystidae); Allothrombium triticium Zhang and Allothrombium pulvinum Ewing (Acarina: Trombidiidae); Neoleucopis kartliana (Tanasijtshuk) (Diptera: Chamaemyiidae); Myrrha octodecimguttata (L.), Rodolia cardinalis Mulstant, Scymnus subvillosus (Goeze) (Coleoptera: Coccinellidae), Dichochrysa genei (Rambur), Dichochrysa prasina (Burmeister) and Chrysoperla lucasina (Lacroix) (Neuroptera: Chrysopidae); Wesmaelius subnebulosus (Stephens) (Neuroptera: Hemerobiidae), Cardiastethus nazarenus Reuter and Elatophilus pachycnemis Horváth (Hemiptera: Anthocoridae). The most efficient and common predator was N. kartliana, here recorded for the first time from Turkey.